Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29526 * 121.53096 * 2 1 4 4 S 1.69479 * 107.84103 * 180.21654 * 3 2 1 5 5 C 1.72010 * 96.02953 * 359.74694 * 4 3 2 6 6 C 1.50706 * 127.31709 * 179.97438 * 5 4 3 7 7 C 1.37898 * 105.36633 * 359.97438 * 5 4 3 8 8 C 1.47340 * 123.08750 * 179.97438 * 7 5 4 9 9 O 1.21619 * 120.00040 * 90.00119 * 8 7 5 10 10 N 1.34779 * 119.99922 * 270.00175 * 8 7 5 11 11 C 1.47146 * 120.98129 * 359.97438 * 10 8 7 12 12 C 1.53300 * 108.38527 * 129.49024 * 11 10 8 13 13 O 1.42960 * 109.22017 * 52.30202 * 12 11 10 14 14 C 1.42962 * 114.16544 * 297.42005 * 13 12 11 15 15 H 1.08997 * 109.55497 * 302.63085 * 14 13 12 16 16 C 1.53005 * 109.51097 * 182.51023 * 14 13 12 17 17 H 1.08999 * 109.47285 * 180.25578 * 16 14 13 18 18 C 1.52995 * 109.47474 * 60.24912 * 16 14 13 19 19 N 1.46504 * 109.46654 * 300.25122 * 16 14 13 20 20 C 1.36943 * 119.99781 * 205.00227 * 19 16 14 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99622 * 180.27904 * 20 19 16 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 C 1.47152 * 120.98094 * 180.02562 * 10 8 7 29 29 H 1.09000 * 109.47506 * 270.25115 * 1 2 3 30 30 H 1.09001 * 109.47091 * 30.24929 * 1 2 3 31 31 H 1.09005 * 109.47110 * 150.24665 * 1 2 3 32 32 H 1.09004 * 109.46282 * 270.02014 * 6 5 4 33 33 H 1.08997 * 109.47408 * 30.01783 * 6 5 4 34 34 H 1.09002 * 109.47135 * 150.02960 * 6 5 4 35 35 H 1.09009 * 109.68345 * 249.21423 * 11 10 8 36 36 H 1.09003 * 109.68433 * 9.72783 * 11 10 8 37 37 H 1.08999 * 109.51280 * 172.22517 * 12 11 10 38 38 H 1.08996 * 109.50628 * 292.37951 * 12 11 10 39 39 H 1.09001 * 109.47135 * 179.97438 * 18 16 14 40 40 H 1.08999 * 109.47409 * 300.00591 * 18 16 14 41 41 H 1.09007 * 109.46569 * 60.00163 * 18 16 14 42 42 H 0.97000 * 120.00410 * 25.00552 * 19 16 14 43 43 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.68474 * 110.79081 * 28 10 8 45 45 H 1.09003 * 109.68283 * 350.22792 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7029 -0.0061 5 6 3.6017 -1.0018 -0.0012 6 6 4.6678 -2.0670 -0.0038 7 6 2.2352 -1.1867 0.0057 8 6 1.6036 -2.5179 0.0111 9 8 1.3480 -3.0654 1.0666 10 7 1.3093 -3.1289 -1.1536 11 6 1.6086 -2.4860 -2.4430 12 6 2.3728 -3.4875 -3.3166 13 8 1.6427 -4.7153 -3.3737 14 6 1.4879 -5.3634 -2.1089 15 1 2.4691 -5.5526 -1.6734 16 6 0.7499 -6.6899 -2.3013 17 1 0.6283 -7.1814 -1.3361 18 6 1.5585 -7.5926 -3.2351 19 7 -0.5676 -6.4347 -2.8889 20 6 -1.5881 -7.3273 -2.6953 21 1 -1.4213 -8.2194 -2.1099 22 6 -2.8348 -7.0884 -3.2569 23 7 -3.0378 -6.0015 -3.9707 24 14 -4.2246 -8.3097 -2.9993 25 1 -4.9821 -7.9466 -1.7747 26 1 -5.1350 -8.2781 -4.1721 27 1 -3.6616 -9.6753 -2.8464 28 6 0.6780 -4.4579 -1.1734 29 1 -0.3634 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5100 32 1 4.9201 -2.3258 -1.0322 33 1 5.5561 -1.6933 0.5053 34 1 4.2980 -2.9525 0.5133 35 1 0.6789 -2.2028 -2.9366 36 1 2.2213 -1.5997 -2.2779 37 1 2.4835 -3.0827 -4.3226 38 1 3.3574 -3.6690 -2.8859 39 1 1.0330 -8.5377 -3.3718 40 1 1.6802 -7.1011 -4.2004 41 1 2.5389 -7.7824 -2.7979 42 1 -0.7173 -5.6337 -3.4150 43 1 -3.9092 -5.8344 -4.3628 44 1 -0.3452 -4.3730 -1.5395 45 1 0.6750 -4.8780 -0.1676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755447307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = -44.956169 kcal Electronic energy + Delta-G solvation = -28458.013765 eV Core-core repulsion = 24601.907405 eV Total energy + Delta-G solvation = -3856.106360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89449 -40.26864 -39.03843 -37.08439 -35.79367 -34.41030 -34.12059 -31.75530 -30.88219 -30.12210 -29.62569 -28.41482 -25.95796 -25.09249 -24.44191 -23.10123 -21.80378 -21.13328 -19.76490 -19.35033 -19.16258 -18.15128 -17.65855 -17.10081 -16.71440 -16.22545 -16.06636 -15.89350 -15.66180 -15.57262 -15.08571 -14.95403 -14.65461 -14.52941 -14.36329 -14.04587 -13.95010 -13.61616 -13.47298 -13.31728 -13.22893 -13.15010 -12.99584 -12.74812 -12.52627 -12.48109 -12.29249 -12.15886 -11.88653 -11.77953 -11.66105 -11.50335 -11.12797 -11.01047 -10.91724 -10.46135 -9.71978 -9.67593 -8.92323 -7.87566 -5.14302 -0.57887 0.24156 0.60965 0.95817 1.32103 1.49710 1.50401 1.58294 1.81444 2.59761 2.79915 3.24660 3.36335 3.46495 3.68644 3.80607 3.94695 3.95576 4.01215 4.08992 4.14486 4.19591 4.29638 4.31052 4.38917 4.48393 4.53862 4.54456 4.63672 4.69244 4.76422 4.80757 4.86680 4.97194 4.99154 5.03558 5.12007 5.20743 5.27905 5.45267 5.56871 5.64065 6.16449 6.27271 6.35237 6.87509 7.41787 8.18130 8.43114 9.35523 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003150 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.157024 B = 8885.395599 C = 9613.434343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.150 3.850 3 N -0.494 5.494 4 S 0.330 5.670 5 C -0.125 4.125 6 C -0.090 4.090 7 C -0.235 4.235 8 C 0.596 3.404 9 O -0.570 6.570 10 N -0.596 5.596 11 C 0.075 3.925 12 C 0.047 3.953 13 O -0.381 6.381 14 C 0.094 3.906 15 H 0.082 0.918 16 C 0.173 3.827 17 H 0.060 0.940 18 C -0.148 4.148 19 N -0.726 5.726 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.964 3.036 25 H -0.291 1.291 26 H -0.299 1.299 27 H -0.271 1.271 28 C 0.095 3.905 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.378 0.622 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.134 13.000 5.283 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 N -0.316 5.316 4 S 0.486 5.514 5 C -0.256 4.256 6 C -0.148 4.148 7 C -0.255 4.255 8 C 0.382 3.618 9 O -0.449 6.449 10 N -0.328 5.328 11 C -0.048 4.048 12 C -0.030 4.030 13 O -0.300 6.300 14 C 0.035 3.965 15 H 0.100 0.900 16 C 0.064 3.936 17 H 0.078 0.922 18 C -0.208 4.208 19 N -0.367 5.367 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.219 1.219 26 H -0.226 1.226 27 H -0.196 1.196 28 C -0.028 4.028 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.211 0.789 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.713 14.571 5.718 25.962 hybrid contribution -2.307 -1.848 0.114 2.958 sum 18.406 12.723 5.832 23.123 Atomic orbital electron populations 1.20671 0.85928 1.04357 1.04355 1.21301 0.99340 0.86805 0.95230 1.76271 1.01994 1.26196 1.27123 1.83784 1.08385 0.93663 1.65569 1.26481 0.96735 1.04048 0.98362 1.20621 0.94741 0.94042 1.05443 1.19987 0.93582 0.94480 1.17494 1.17647 0.77081 0.84091 0.82958 1.90793 1.55217 1.66912 1.32011 1.48176 1.59618 1.18697 1.06272 1.22587 1.01844 0.97266 0.83063 1.23167 0.94188 0.83773 1.01905 1.88086 1.76097 1.36618 1.29182 1.22643 0.97887 0.91970 0.84042 0.89994 1.20514 0.85108 0.91955 0.96069 0.92224 1.22172 0.99180 0.99173 1.00296 1.42498 1.06434 1.25823 1.61970 1.19612 0.90376 1.01540 1.25054 0.90722 1.25423 1.00109 0.99642 1.01358 1.69816 1.22884 1.28435 1.40550 0.85268 0.79699 0.79218 0.76356 1.21857 1.22564 1.19555 1.22178 0.97129 0.82227 1.01287 0.89259 0.88278 0.91201 0.86950 0.87214 0.91149 0.90905 0.87510 0.85583 0.90802 0.94451 0.93580 0.91264 0.78939 0.94338 0.91889 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.03 9.96 71.23 0.71 -1.32 16 2 C 0.15 3.53 6.75 43.14 0.29 3.82 16 3 N -0.49 -11.14 11.97 -51.09 -0.61 -11.75 16 4 S 0.33 5.25 23.69 -56.49 -1.34 3.92 16 5 C -0.13 -2.17 6.51 25.61 0.17 -2.01 16 6 C -0.09 -1.03 10.19 71.24 0.73 -0.30 16 7 C -0.24 -5.53 3.68 -20.72 -0.08 -5.60 16 8 C 0.60 17.43 5.66 86.64 0.49 17.92 16 9 O -0.57 -21.20 16.58 -4.09 -0.07 -21.27 16 10 N -0.60 -16.61 3.02 -821.23 -2.48 -19.09 16 11 C 0.07 1.64 6.54 86.36 0.56 2.21 16 12 C 0.05 0.96 6.99 72.08 0.50 1.46 16 13 O -0.38 -11.75 9.22 -148.98 -1.37 -13.12 16 14 C 0.09 2.93 2.53 30.71 0.08 3.01 16 15 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 16 C 0.17 6.53 2.73 44.99 0.12 6.65 16 17 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 18 C -0.15 -5.10 9.35 71.98 0.67 -4.42 16 19 N -0.73 -35.55 4.29 -322.93 -1.39 -36.94 16 20 C -0.23 -12.74 9.93 84.03 0.83 -11.91 16 21 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 23 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 24 Si 0.96 46.33 29.55 68.60 2.03 48.36 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 C 0.09 3.21 5.87 86.37 0.51 3.72 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.70 7.39 -2.38 -0.02 1.69 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 1.08 7.85 -2.39 -0.02 1.07 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.11 1.86 6.30 -2.39 -0.02 1.84 16 37 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.67 7.69 -2.39 -0.02 1.65 16 41 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.38 20.25 7.20 -92.71 -0.67 19.58 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.06 2.62 7.27 -2.39 -0.02 2.60 16 45 H 0.09 3.08 7.08 -2.39 -0.02 3.06 16 Total: -1.00 -71.86 381.31 1.45 -70.41 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.34 Total: 28.51 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.06 Total: 9.53 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -4.19 Total: -126.32 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.44 Total: -34.39 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.34 Total: 3.92 kcal Total: -71.86 1.45 -70.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.449 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds