Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34478 * 126.16382 * 2 1 4 4 C 1.30256 * 108.70174 * 180.02562 * 3 2 1 5 5 O 1.33980 * 108.75701 * 359.72842 * 4 3 2 6 6 C 1.34328 * 126.16594 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.44474 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47325 * 89.99600 * 7 6 2 9 9 C 1.46897 * 111.00421 * 180.02562 * 8 7 6 10 10 H 1.09007 * 110.77955 * 323.21826 * 9 8 7 11 11 C 1.55153 * 110.72111 * 86.45283 * 9 8 7 12 12 C 1.54912 * 101.58230 * 153.86794 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.09005 * 109.88315 * 239.29631 * 26 13 12 28 28 C 1.52998 * 109.88541 * 118.12953 * 26 13 12 29 29 H 1.08997 * 109.46634 * 270.00224 * 1 2 3 30 30 H 1.08997 * 109.46828 * 30.00368 * 1 2 3 31 31 H 1.08995 * 109.46859 * 150.00375 * 1 2 3 32 32 H 1.07991 * 125.62020 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47155 * 329.99871 * 7 6 2 34 34 H 1.08998 * 109.47614 * 209.99602 * 7 6 2 35 35 H 1.00899 * 111.00279 * 303.95778 * 8 7 6 36 36 H 1.08994 * 111.00496 * 35.79389 * 11 9 8 37 37 H 1.09003 * 111.03753 * 271.95636 * 11 9 8 38 38 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 39 39 H 1.09001 * 110.46061 * 81.87930 * 12 11 9 40 40 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 41 41 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 42 42 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 43 43 H 1.09001 * 109.46601 * 61.45393 * 28 26 13 44 44 H 1.09000 * 109.47226 * 181.45101 * 28 26 13 45 45 H 1.08994 * 109.47222 * 301.45625 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5432 0.6948 -0.0006 5 8 3.5734 -0.6446 0.0051 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0006 8 7 1.7034 -2.9901 -1.3843 9 6 1.2640 -4.3913 -1.4235 10 1 1.7237 -4.9634 -0.6175 11 6 -0.2830 -4.4837 -1.3491 12 6 -0.5488 -5.8317 -2.0646 13 7 0.4441 -5.8834 -3.1531 14 6 0.3276 -6.5991 -4.2891 15 8 1.2110 -6.5668 -5.1196 16 6 -0.9004 -7.4396 -4.5276 17 16 -0.7592 -8.2737 -6.1278 18 6 -2.2831 -9.1578 -6.1475 19 1 -2.9670 -9.0736 -5.3160 20 6 -2.6045 -9.9626 -7.2318 21 7 -1.7706 -10.0656 -8.2451 22 14 -4.2205 -10.8994 -7.2530 23 1 -4.3236 -11.6801 -8.5120 24 1 -4.2718 -11.8242 -6.0922 25 1 -5.3504 -9.9393 -7.1714 26 6 1.5851 -5.0298 -2.7914 27 1 1.7165 -4.2494 -3.5409 28 6 2.8558 -5.8757 -2.6884 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 4.4065 1.3435 -0.0003 33 1 0.8913 -2.6032 0.5141 34 1 2.5899 -3.1352 0.5147 35 1 1.0702 -2.3983 -1.9010 36 1 -0.7500 -3.6579 -1.8856 37 1 -0.6237 -4.5169 -0.3142 38 1 -1.5597 -5.8522 -2.4718 39 1 -0.4009 -6.6640 -1.3765 40 1 -1.7836 -6.8008 -4.5272 41 1 -0.9901 -8.1843 -3.7369 42 1 -0.9317 -9.5789 -8.2342 43 1 3.0678 -6.3320 -3.6554 44 1 3.6920 -5.2411 -2.3950 45 1 2.7128 -6.6567 -1.9417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755660218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -42.469438 kcal Electronic energy + Delta-G solvation = -26508.722604 eV Core-core repulsion = 22652.724076 eV Total energy + Delta-G solvation = -3855.998528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.28507 -41.36788 -39.13751 -36.60235 -36.02661 -34.75432 -33.41233 -32.51640 -31.62244 -30.12041 -28.78417 -27.08245 -26.68450 -25.04385 -23.93215 -23.17472 -22.05991 -21.70847 -20.65353 -19.86311 -18.25346 -18.16642 -17.72695 -17.48801 -16.94629 -16.59240 -16.22804 -15.85328 -15.71925 -15.59447 -15.21883 -14.71296 -14.64305 -14.58435 -14.22012 -14.15230 -14.07748 -13.96858 -13.82349 -13.61714 -13.34665 -13.18417 -12.99983 -12.75544 -12.73341 -12.59976 -12.06011 -11.99194 -11.95621 -11.78345 -11.55925 -11.46835 -11.09976 -10.98015 -10.33377 -9.77170 -9.75433 -9.43464 -8.93152 -8.88993 -6.28799 0.45283 1.14100 1.49071 1.51421 1.60689 1.67146 1.80632 1.85826 1.99904 2.33893 3.01814 3.06472 3.08553 3.33403 3.41917 3.50038 3.76486 3.87427 3.88493 3.97765 4.10759 4.17806 4.22687 4.28914 4.30541 4.35924 4.47190 4.56797 4.67001 4.68778 4.72449 4.74147 4.81886 4.95025 5.01190 5.05394 5.07981 5.17632 5.22052 5.40457 5.43174 5.63134 5.86500 6.13592 6.21305 6.34646 6.75510 7.05033 7.06687 8.50083 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026481 B = 0.001946 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.097832 B =14386.345278 C =14850.993586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 N -0.527 5.527 4 C 0.179 3.821 5 O -0.210 6.210 6 C -0.052 4.052 7 C 0.150 3.850 8 N -0.686 5.686 9 C 0.100 3.900 10 H 0.119 0.881 11 C -0.151 4.151 12 C 0.089 3.911 13 N -0.612 5.612 14 C 0.544 3.456 15 O -0.564 6.564 16 C -0.099 4.099 17 S -0.198 6.198 18 C -0.612 4.612 19 H 0.076 0.924 20 C -0.020 4.020 21 N -0.913 5.913 22 Si 1.137 2.863 23 H -0.281 1.281 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.140 3.860 27 H 0.058 0.942 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.287 0.713 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.350 0.650 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.260 0.740 43 H 0.030 0.970 44 H 0.081 0.919 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 19.476 26.621 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.144 4.144 3 N -0.256 5.256 4 C -0.047 4.047 5 O -0.096 6.096 6 C -0.105 4.105 7 C 0.022 3.978 8 N -0.318 5.318 9 C -0.010 4.010 10 H 0.137 0.863 11 C -0.191 4.191 12 C -0.033 4.033 13 N -0.347 5.347 14 C 0.332 3.668 15 O -0.443 6.443 16 C -0.250 4.250 17 S 0.029 5.971 18 C -0.760 4.760 19 H 0.094 0.906 20 C -0.223 4.223 21 N -0.548 5.548 22 Si 0.954 3.046 23 H -0.206 1.206 24 H -0.187 1.187 25 H -0.187 1.187 26 C 0.036 3.964 27 H 0.076 0.924 28 C -0.210 4.210 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.302 0.698 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.100 0.900 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.278 18.922 24.393 31.320 hybrid contribution -0.214 0.586 1.332 1.470 sum 5.064 19.508 25.725 32.680 Atomic orbital electron populations 1.20226 0.85042 1.03913 1.03787 1.22020 0.99152 0.87655 1.05591 1.70380 1.02677 1.32772 1.19801 1.28954 0.98156 0.79303 0.98300 1.84464 1.30621 1.25184 1.69368 1.23343 0.80677 0.98172 1.08354 1.20336 1.01957 0.85336 0.90141 1.60219 1.55844 1.02418 1.13281 1.22524 0.94166 0.89012 0.95340 0.86326 1.23555 0.95895 0.96358 1.03249 1.22635 0.92543 0.99753 0.88373 1.48483 1.21966 1.46224 1.18048 1.19702 0.87119 0.79318 0.80643 1.90686 1.42889 1.65121 1.45558 1.23152 0.99388 1.01355 1.01097 1.85107 1.29872 1.58872 1.23225 1.24013 1.05195 1.35399 1.11347 0.90584 1.27876 1.07274 0.96520 0.90663 1.70922 1.10635 1.41101 1.32151 0.82719 0.69354 0.75374 0.77117 1.20610 1.18671 1.18687 1.21533 0.85684 0.91717 0.97433 0.92383 1.22004 0.97521 1.00231 1.01249 0.89496 0.91167 0.89205 0.69840 0.88567 0.88163 0.83039 0.89848 0.85906 0.89936 0.89303 0.87440 0.87386 0.92939 0.95091 0.90003 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.05 71.24 0.72 0.02 16 2 C -0.02 -0.37 7.11 41.26 0.29 -0.08 16 3 N -0.53 -9.57 11.29 -304.05 -3.43 -13.00 16 4 C 0.18 2.33 13.23 130.48 1.73 4.05 16 5 O -0.21 -3.36 10.78 -3.81 -0.04 -3.40 16 6 C -0.05 -0.73 6.90 24.79 0.17 -0.56 16 7 C 0.15 1.26 5.70 85.56 0.49 1.75 16 8 N -0.69 -7.93 6.28 -489.43 -3.07 -11.00 16 9 C 0.10 1.16 2.76 46.11 0.13 1.29 16 10 H 0.12 1.03 7.60 -2.38 -0.02 1.01 16 11 C -0.15 -1.26 6.63 31.99 0.21 -1.05 16 12 C 0.09 1.39 6.69 86.86 0.58 1.98 16 13 N -0.61 -16.04 3.06 -788.04 -2.41 -18.46 16 14 C 0.54 20.82 7.66 87.66 0.67 21.49 16 15 O -0.56 -26.98 14.91 -3.04 -0.05 -27.02 16 16 C -0.10 -3.98 5.16 71.24 0.37 -3.61 16 17 S -0.20 -11.03 19.60 -56.49 -1.11 -12.14 16 18 C -0.61 -35.35 9.50 67.95 0.65 -34.71 16 19 H 0.08 4.09 7.80 -2.92 -0.02 4.06 16 20 C -0.02 -1.18 5.49 84.86 0.47 -0.72 16 21 N -0.91 -58.40 13.67 21.65 0.30 -58.11 16 22 Si 1.14 49.06 29.92 68.60 2.05 51.12 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C 0.14 3.13 3.22 45.35 0.15 3.28 16 27 H 0.06 1.58 8.03 -2.38 -0.02 1.56 16 28 C -0.15 -3.68 9.11 71.98 0.66 -3.02 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.48 7.79 -2.39 -0.02 0.47 16 32 H 0.29 0.74 8.06 -2.92 -0.02 0.72 16 33 H 0.10 0.30 7.79 -2.39 -0.02 0.28 16 34 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 35 H 0.35 4.08 8.29 -89.69 -0.74 3.33 16 36 H 0.08 0.70 7.81 -2.39 -0.02 0.69 16 37 H 0.12 0.24 8.14 -2.39 -0.02 0.23 16 38 H 0.08 1.30 7.48 -2.39 -0.02 1.28 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 3.94 7.85 -2.39 -0.02 3.92 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.26 17.34 7.12 -92.71 -0.66 16.68 16 43 H 0.03 1.00 6.89 -2.39 -0.02 0.99 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -86.95 387.62 -0.13 -87.08 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.37 Total: 14.83 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 7.27 Total: -9.89 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -8.62 Total: -100.57 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.09 Total: -30.43 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.12 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.11 Total: -12.14 kcal Total: -86.95 -0.13 -87.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755660218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.609 kcal (2) G-P(sol) polarization free energy of solvation -86.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds