Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34481 * 126.84209 * 2 1 4 4 N 1.36438 * 108.86199 * 180.26514 * 3 2 1 5 5 H 0.97003 * 124.85701 * 179.69129 * 4 3 2 6 6 C 1.34660 * 110.29638 * 359.71703 * 4 3 2 7 7 C 1.36765 * 108.39878 * 359.97438 * 6 4 3 8 8 C 1.47255 * 126.94511 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00307 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99916 * 0.03147 * 8 7 6 11 11 C 1.46504 * 120.00082 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47058 * 324.99583 * 11 10 8 13 13 C 1.52993 * 109.47454 * 84.99817 * 11 10 8 14 14 C 1.53000 * 109.47054 * 205.00252 * 11 10 8 15 15 H 1.09002 * 109.47398 * 64.99825 * 14 11 10 16 16 C 1.52997 * 109.47060 * 304.99656 * 14 11 10 17 17 N 1.46500 * 109.47023 * 184.99896 * 14 11 10 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 14 11 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 14 21 21 S 1.81001 * 109.47021 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99692 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00491 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99834 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00150 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00062 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46924 * 60.00101 * 26 24 22 28 28 H 1.48498 * 109.47258 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47062 * 300.00346 * 26 24 22 30 30 H 1.08992 * 109.47071 * 270.19966 * 1 2 3 31 31 H 1.09009 * 109.46711 * 30.19845 * 1 2 3 32 32 H 1.09004 * 109.47475 * 150.19724 * 1 2 3 33 33 H 1.08004 * 125.56604 * 359.97438 * 3 2 1 34 34 H 1.08000 * 125.79959 * 180.02562 * 6 4 3 35 35 H 0.97001 * 120.00120 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47639 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47135 * 300.00125 * 13 11 10 38 38 H 1.09002 * 109.47179 * 59.99840 * 13 11 10 39 39 H 1.08996 * 109.47853 * 180.02562 * 16 14 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 14 11 41 41 H 1.08998 * 109.47533 * 59.99948 * 16 14 11 42 42 H 0.96997 * 120.00274 * 24.99518 * 17 14 11 43 43 H 1.08999 * 109.47169 * 300.00043 * 20 18 17 44 44 H 1.08999 * 109.47104 * 60.00393 * 20 18 17 45 45 H 0.96996 * 120.00313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3134 1.0762 0.0000 4 7 3.6111 0.6551 -0.0060 5 1 4.3841 1.2411 -0.0115 6 6 3.6655 -0.6904 -0.0037 7 6 2.3863 -1.1742 0.0045 8 6 1.9748 -2.5880 0.0091 9 8 0.7936 -2.8776 0.0159 10 7 2.9072 -3.5613 0.0058 11 6 2.4978 -4.9680 0.0109 12 1 1.5913 -5.0804 0.6057 13 6 2.2264 -5.4254 -1.4236 14 6 3.6139 -5.8218 0.6160 15 1 3.7465 -5.5562 1.6648 16 6 4.9180 -5.5687 -0.1430 17 7 3.2556 -7.2385 0.5125 18 6 3.7801 -8.1310 1.3755 19 8 4.5484 -7.7612 2.2381 20 6 3.4112 -9.5883 1.2694 21 16 4.2710 -10.5237 2.5585 22 6 3.6737 -12.1444 2.2103 23 1 2.9839 -12.3021 1.3944 24 6 4.0905 -13.2188 2.9841 25 7 4.9315 -13.0268 3.9782 26 14 3.4567 -14.9369 2.6155 27 1 3.8406 -15.3201 1.2331 28 1 4.0480 -15.8999 3.5789 29 1 1.9772 -14.9564 2.7417 30 1 -0.3633 0.0036 1.0276 31 1 -0.3633 0.8883 -0.5170 32 1 -0.3634 -0.8918 -0.5108 33 1 1.9869 2.1058 -0.0004 34 1 4.5663 -1.2862 -0.0068 35 1 3.8493 -3.3304 0.0008 36 1 1.9223 -6.4720 -1.4199 37 1 1.4312 -4.8171 -1.8547 38 1 3.1328 -5.3130 -2.0185 39 1 5.7131 -6.1773 0.2876 40 1 4.7854 -5.8343 -1.1919 41 1 5.1846 -4.5147 -0.0661 42 1 2.6410 -7.5342 -0.1772 43 1 2.3345 -9.7007 1.3963 44 1 3.7030 -9.9666 0.2896 45 1 5.2231 -13.7776 4.5187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755965059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -35.146447 kcal Electronic energy + Delta-G solvation = -26122.431284 eV Core-core repulsion = 22266.750305 eV Total energy + Delta-G solvation = -3855.680979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56622 -40.02986 -38.99390 -36.80195 -33.98760 -32.74847 -32.41897 -31.63758 -30.26238 -29.21008 -28.45853 -26.86048 -25.49126 -25.00779 -23.34088 -21.03301 -20.19989 -19.95331 -19.58835 -18.71981 -17.88932 -16.82040 -16.50512 -16.04294 -15.56159 -15.25082 -14.96745 -14.79177 -14.64628 -14.37757 -14.25540 -13.96510 -13.81202 -13.47894 -13.21417 -13.12899 -12.93735 -12.78095 -12.61430 -12.53634 -12.38950 -11.97674 -11.89248 -11.70321 -11.16718 -11.03931 -11.02597 -11.00086 -10.75682 -10.01187 -9.81512 -9.42471 -9.31552 -9.05619 -8.96152 -8.93619 -8.66257 -8.23371 -6.49004 -6.20561 -3.91102 1.41426 2.05097 2.71661 2.86504 3.08061 3.17546 3.24689 3.29123 3.34048 3.37388 3.76215 4.21637 4.38138 4.44100 4.65893 4.69649 4.73944 4.96789 5.02740 5.13058 5.14566 5.20972 5.24804 5.25960 5.44371 5.46587 5.53362 5.62199 5.64986 5.74511 5.82977 5.85236 5.90117 5.95810 5.98215 6.15291 6.21917 6.28726 6.43900 6.51750 6.62698 7.00793 7.36670 7.60460 7.68772 8.16542 8.36154 8.60134 9.24718 10.86794 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.001788 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.791177 B =15655.118657 C =15984.536069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.108 4.108 3 C -0.027 4.027 4 N -0.549 5.549 5 H 0.418 0.582 6 C 0.047 3.953 7 C -0.227 4.227 8 C 0.591 3.409 9 O -0.539 6.539 10 N -0.723 5.723 11 C 0.138 3.862 12 H 0.096 0.904 13 C -0.167 4.167 14 C 0.138 3.862 15 H 0.094 0.906 16 C -0.167 4.167 17 N -0.731 5.731 18 C 0.535 3.465 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.397 0.603 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 29.018 -12.914 31.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.155 4.155 4 N -0.143 5.143 5 H 0.254 0.746 6 C -0.090 4.090 7 C -0.238 4.238 8 C 0.380 3.620 9 O -0.417 6.417 10 N -0.377 5.377 11 C 0.033 3.967 12 H 0.114 0.886 13 C -0.225 4.225 14 C 0.032 3.968 15 H 0.112 0.888 16 C -0.225 4.225 17 N -0.388 5.388 18 C 0.321 3.679 19 O -0.390 6.390 20 C -0.305 4.305 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.206 29.439 -11.303 31.611 hybrid contribution -0.583 -1.286 -1.568 2.110 sum -2.790 28.153 -12.870 31.081 Atomic orbital electron populations 1.20203 0.89238 1.02603 1.02088 1.20582 0.95714 0.90297 1.04843 1.21598 0.82395 0.99294 1.12199 1.41492 1.08391 1.06681 1.57722 0.74554 1.21928 0.98509 0.83977 1.04554 1.20365 0.92720 0.92767 1.17961 1.17391 0.85364 0.83962 0.75329 1.90756 1.17169 1.83648 1.50108 1.45909 1.09642 1.05484 1.76650 1.21062 0.98134 0.80049 0.97441 0.88622 1.22243 1.02527 1.01551 0.96181 1.20972 0.93264 0.81332 1.01275 0.88834 1.22258 0.98025 1.01235 1.01018 1.46079 1.50277 1.06581 1.35849 1.20322 0.79838 0.87486 0.80277 1.90699 1.34053 1.80087 1.34165 1.23538 1.05571 0.94305 1.07053 1.85378 1.59403 1.01605 1.36894 1.22833 1.32790 0.92812 1.20000 0.90954 1.24988 0.94784 0.99304 0.94483 1.70003 1.30578 1.32105 1.17632 0.86227 0.79091 0.81932 0.78266 1.19950 1.20825 1.19927 0.91732 0.92394 0.90271 0.81383 0.81162 0.76747 0.91524 0.91595 0.91835 0.91092 0.91835 0.92386 0.76548 0.89127 0.89175 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.97 36.01 0.36 -0.39 16 2 C -0.11 -0.99 6.35 -102.54 -0.65 -1.64 16 3 C -0.03 -0.17 11.82 -16.83 -0.20 -0.37 16 4 N -0.55 -2.43 5.90 -12.85 -0.08 -2.50 16 5 H 0.42 0.41 8.96 -40.82 -0.37 0.05 16 6 C 0.05 0.28 11.40 -16.84 -0.19 0.09 16 7 C -0.23 -2.16 6.29 -103.35 -0.65 -2.81 16 8 C 0.59 6.74 7.77 -12.60 -0.10 6.64 16 9 O -0.54 -8.02 14.99 5.26 0.08 -7.94 16 10 N -0.72 -6.47 4.98 -54.94 -0.27 -6.74 16 11 C 0.14 1.38 2.62 -67.93 -0.18 1.20 16 12 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 13 C -0.17 -1.46 9.00 37.15 0.33 -1.12 16 14 C 0.14 1.54 2.62 -67.93 -0.18 1.36 16 15 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 16 C -0.17 -1.59 9.00 37.16 0.33 -1.26 16 17 N -0.73 -9.46 4.99 -53.81 -0.27 -9.73 16 18 C 0.53 9.72 7.81 -10.99 -0.09 9.63 16 19 O -0.52 -11.37 15.52 5.55 0.09 -11.28 16 20 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 26 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.87 6.86 -51.93 -0.36 0.51 16 33 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.17 0.46 7.45 -52.49 -0.39 0.07 16 35 H 0.40 2.54 5.52 -40.82 -0.23 2.32 16 36 H 0.07 0.52 6.29 -51.93 -0.33 0.20 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 41 H 0.06 0.39 6.29 -51.93 -0.33 0.06 16 42 H 0.40 4.15 6.58 -40.82 -0.27 3.88 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -38.09 386.11 -8.15 -46.25 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.23 Total: 3.43 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.78 Total: -4.45 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.12 Total: -44.41 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.09 -8.15 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755965059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.099 kcal (2) G-P(sol) polarization free energy of solvation -38.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds