Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34481 * 126.84209 * 2 1 4 4 N 1.36438 * 108.86199 * 180.26514 * 3 2 1 5 5 H 0.97003 * 124.85701 * 179.69129 * 4 3 2 6 6 C 1.34660 * 110.29638 * 359.71703 * 4 3 2 7 7 C 1.36765 * 108.39878 * 359.97438 * 6 4 3 8 8 C 1.47255 * 126.94511 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00307 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99916 * 0.03147 * 8 7 6 11 11 C 1.46504 * 120.00082 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47058 * 324.99583 * 11 10 8 13 13 C 1.52993 * 109.47454 * 84.99817 * 11 10 8 14 14 C 1.53000 * 109.47054 * 205.00252 * 11 10 8 15 15 H 1.09002 * 109.47398 * 64.99825 * 14 11 10 16 16 C 1.52997 * 109.47060 * 304.99656 * 14 11 10 17 17 N 1.46500 * 109.47023 * 184.99896 * 14 11 10 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 14 11 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 14 21 21 S 1.81001 * 109.47021 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99692 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00491 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99834 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00150 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00062 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46924 * 60.00101 * 26 24 22 28 28 H 1.48498 * 109.47258 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47062 * 300.00346 * 26 24 22 30 30 H 1.08992 * 109.47071 * 270.19966 * 1 2 3 31 31 H 1.09009 * 109.46711 * 30.19845 * 1 2 3 32 32 H 1.09004 * 109.47475 * 150.19724 * 1 2 3 33 33 H 1.08004 * 125.56604 * 359.97438 * 3 2 1 34 34 H 1.08000 * 125.79959 * 180.02562 * 6 4 3 35 35 H 0.97001 * 120.00120 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47639 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47135 * 300.00125 * 13 11 10 38 38 H 1.09002 * 109.47179 * 59.99840 * 13 11 10 39 39 H 1.08996 * 109.47853 * 180.02562 * 16 14 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 14 11 41 41 H 1.08998 * 109.47533 * 59.99948 * 16 14 11 42 42 H 0.96997 * 120.00274 * 24.99518 * 17 14 11 43 43 H 1.08999 * 109.47169 * 300.00043 * 20 18 17 44 44 H 1.08999 * 109.47104 * 60.00393 * 20 18 17 45 45 H 0.96996 * 120.00313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3134 1.0762 0.0000 4 7 3.6111 0.6551 -0.0060 5 1 4.3841 1.2411 -0.0115 6 6 3.6655 -0.6904 -0.0037 7 6 2.3863 -1.1742 0.0045 8 6 1.9748 -2.5880 0.0091 9 8 0.7936 -2.8776 0.0159 10 7 2.9072 -3.5613 0.0058 11 6 2.4978 -4.9680 0.0109 12 1 1.5913 -5.0804 0.6057 13 6 2.2264 -5.4254 -1.4236 14 6 3.6139 -5.8218 0.6160 15 1 3.7465 -5.5562 1.6648 16 6 4.9180 -5.5687 -0.1430 17 7 3.2556 -7.2385 0.5125 18 6 3.7801 -8.1310 1.3755 19 8 4.5484 -7.7612 2.2381 20 6 3.4112 -9.5883 1.2694 21 16 4.2710 -10.5237 2.5585 22 6 3.6737 -12.1444 2.2103 23 1 2.9839 -12.3021 1.3944 24 6 4.0905 -13.2188 2.9841 25 7 4.9315 -13.0268 3.9782 26 14 3.4567 -14.9369 2.6155 27 1 3.8406 -15.3201 1.2331 28 1 4.0480 -15.8999 3.5789 29 1 1.9772 -14.9564 2.7417 30 1 -0.3633 0.0036 1.0276 31 1 -0.3633 0.8883 -0.5170 32 1 -0.3634 -0.8918 -0.5108 33 1 1.9869 2.1058 -0.0004 34 1 4.5663 -1.2862 -0.0068 35 1 3.8493 -3.3304 0.0008 36 1 1.9223 -6.4720 -1.4199 37 1 1.4312 -4.8171 -1.8547 38 1 3.1328 -5.3130 -2.0185 39 1 5.7131 -6.1773 0.2876 40 1 4.7854 -5.8343 -1.1919 41 1 5.1846 -4.5147 -0.0661 42 1 2.6410 -7.5342 -0.1772 43 1 2.3345 -9.7007 1.3963 44 1 3.7030 -9.9666 0.2896 45 1 5.2231 -13.7776 4.5187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755965059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -63.847735 kcal Electronic energy + Delta-G solvation = -26123.675865 eV Core-core repulsion = 22266.750305 eV Total energy + Delta-G solvation = -3856.925560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09326 -41.10270 -40.09684 -37.88667 -35.07900 -34.57323 -33.31513 -32.69631 -31.20184 -29.89071 -29.75554 -27.64761 -27.42810 -25.84638 -24.12951 -22.11265 -21.12667 -20.81436 -20.29767 -19.81901 -19.17211 -18.02311 -17.57496 -17.08001 -16.86890 -16.58909 -16.31485 -16.10126 -15.77641 -15.48440 -15.06407 -14.90020 -14.71229 -14.50526 -14.40885 -14.14154 -13.99238 -13.59881 -13.57521 -13.36617 -13.24112 -13.19201 -13.15350 -12.86033 -12.78176 -12.59870 -12.30501 -12.06292 -11.91919 -11.72802 -11.12035 -10.97989 -10.86559 -10.27090 -10.19309 -10.14429 -9.52373 -9.15983 -8.65112 -8.33622 -6.11327 0.81002 1.26542 1.44476 1.46336 1.51896 1.56023 1.61513 2.00430 2.28361 2.43071 2.56369 2.61352 3.00406 3.32877 3.50509 3.83726 3.97077 4.01505 4.05538 4.14739 4.31332 4.31997 4.39073 4.47966 4.49836 4.53063 4.69007 4.72466 4.76487 4.90889 4.92958 4.96128 4.98420 5.15666 5.19463 5.33794 5.41975 5.42851 5.43820 5.54772 5.84541 5.99021 6.20658 6.46971 6.64036 6.73706 7.07690 7.23375 7.38173 8.75251 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.001788 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.791177 B =15655.118657 C =15984.536069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.152 4.152 3 C -0.012 4.012 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.070 3.930 7 C -0.272 4.272 8 C 0.586 3.414 9 O -0.587 6.587 10 N -0.710 5.710 11 C 0.148 3.852 12 H 0.070 0.930 13 C -0.162 4.162 14 C 0.141 3.859 15 H 0.071 0.929 16 C -0.162 4.162 17 N -0.708 5.708 18 C 0.538 3.462 19 O -0.560 6.560 20 C -0.132 4.132 21 S -0.148 6.148 22 C -0.548 4.548 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.261 1.261 28 H -0.279 1.279 29 H -0.263 1.263 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.198 0.802 34 H 0.206 0.794 35 H 0.411 0.589 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 30.248 -15.140 33.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.158 4.158 3 C -0.140 4.140 4 N -0.128 5.128 5 H 0.279 0.721 6 C -0.069 4.069 7 C -0.282 4.282 8 C 0.377 3.623 9 O -0.468 6.468 10 N -0.364 5.364 11 C 0.042 3.958 12 H 0.088 0.912 13 C -0.220 4.220 14 C 0.035 3.965 15 H 0.089 0.911 16 C -0.220 4.220 17 N -0.364 5.364 18 C 0.324 3.676 19 O -0.438 6.438 20 C -0.283 4.283 21 S 0.079 5.921 22 C -0.696 4.696 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.186 1.186 28 H -0.204 1.204 29 H -0.188 1.188 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.215 0.785 34 H 0.223 0.777 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.621 30.722 -13.578 33.628 hybrid contribution -0.762 -1.484 -0.919 1.905 sum -2.383 29.238 -14.497 32.721 Atomic orbital electron populations 1.20097 0.90109 1.02081 1.01359 1.20813 0.95911 0.91585 1.07490 1.21956 0.82514 0.99787 1.09778 1.41560 1.08724 1.06562 1.55971 0.72140 1.22355 0.98254 0.84704 1.01580 1.20392 0.94647 0.91763 1.21432 1.17802 0.84922 0.85151 0.74470 1.90726 1.19132 1.84419 1.52530 1.45739 1.10140 1.04612 1.75935 1.20850 0.96469 0.80559 0.97927 0.91153 1.22211 1.02959 1.01817 0.95009 1.21034 0.94849 0.79985 1.00605 0.91113 1.22227 0.95575 1.02943 1.01283 1.45833 1.49149 1.06792 1.34596 1.20017 0.79707 0.87363 0.80533 1.90690 1.36313 1.80543 1.36260 1.23389 1.05395 0.94502 1.05000 1.85536 1.61719 1.03550 1.41292 1.23184 1.32913 0.93124 1.20340 0.89925 1.26114 0.94790 1.04155 0.94055 1.70169 1.32104 1.33538 1.18905 0.85019 0.78732 0.75803 0.78539 1.18588 1.20395 1.18814 0.92652 0.90331 0.93256 0.78490 0.77712 0.75053 0.90492 0.92892 0.90017 0.93714 0.90060 0.89149 0.74689 0.87416 0.86973 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.97 71.24 0.71 -0.77 16 2 C -0.15 -2.70 6.35 -18.51 -0.12 -2.81 16 3 C -0.01 -0.12 11.82 83.12 0.98 0.87 16 4 N -0.53 -2.85 5.90 -194.57 -1.15 -3.99 16 5 H 0.44 -1.01 8.96 -92.71 -0.83 -1.84 16 6 C 0.07 0.61 11.40 83.91 0.96 1.57 16 7 C -0.27 -4.94 6.29 -19.04 -0.12 -5.06 16 8 C 0.59 13.52 7.77 86.61 0.67 14.19 16 9 O -0.59 -18.56 14.99 -4.11 -0.06 -18.62 16 10 N -0.71 -11.96 4.98 -445.96 -2.22 -14.18 16 11 C 0.15 2.84 2.62 44.99 0.12 2.96 16 12 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 13 C -0.16 -2.55 9.00 71.98 0.65 -1.90 16 14 C 0.14 3.02 2.62 44.99 0.12 3.13 16 15 H 0.07 1.90 7.58 -2.39 -0.02 1.89 16 16 C -0.16 -2.72 9.00 71.98 0.65 -2.08 16 17 N -0.71 -17.47 4.99 -442.53 -2.21 -19.68 16 18 C 0.54 19.44 7.81 87.66 0.68 20.13 16 19 O -0.56 -25.28 15.52 -3.05 -0.05 -25.32 16 20 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 21 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 22 C -0.55 -31.31 9.50 67.96 0.65 -30.67 16 23 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 24 C 0.01 0.78 5.49 84.86 0.47 1.25 16 25 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 26 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 29 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.05 1.19 6.86 -2.38 -0.02 1.18 16 33 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.21 0.19 7.45 -2.91 -0.02 0.17 16 35 H 0.41 4.23 5.52 -92.71 -0.51 3.72 16 36 H 0.08 1.04 6.29 -2.39 -0.02 1.02 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.01 6.57 -2.39 -0.02 0.99 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.10 6.57 -2.39 -0.02 1.09 16 41 H 0.09 0.92 6.29 -2.39 -0.02 0.90 16 42 H 0.41 7.73 6.58 -92.71 -0.61 7.12 16 43 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 44 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -88.69 386.11 1.42 -87.28 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.90 Total: 17.83 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 6.85 Total: -3.93 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -5.29 Total: -93.60 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.11 Total: -43.94 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -88.69 1.42 -87.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755965059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.428 kcal (2) G-P(sol) polarization free energy of solvation -88.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds