Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34491 * 126.83438 * 2 1 4 4 N 1.36445 * 108.85853 * 180.26077 * 3 2 1 5 5 H 0.97000 * 124.85446 * 179.68558 * 4 3 2 6 6 C 1.34667 * 110.29562 * 359.71861 * 4 3 2 7 7 C 1.36770 * 108.39790 * 359.97438 * 6 4 3 8 8 C 1.47256 * 126.94389 * 180.02562 * 7 6 4 9 9 O 1.21624 * 120.00355 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00032 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00075 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47085 * 35.00197 * 11 10 8 13 13 C 1.53001 * 109.46826 * 274.99922 * 11 10 8 14 14 C 1.53000 * 109.47023 * 155.00453 * 11 10 8 15 15 H 1.09002 * 109.47398 * 59.99929 * 14 11 10 16 16 C 1.52997 * 109.47060 * 299.99760 * 14 11 10 17 17 N 1.46500 * 109.47023 * 179.97438 * 14 11 10 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 14 11 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 14 21 21 S 1.81001 * 109.47021 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99692 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00491 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99834 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00150 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00062 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46773 * 90.00216 * 26 24 22 28 28 H 1.48502 * 109.47309 * 210.00185 * 26 24 22 29 29 H 1.48500 * 109.47082 * 330.00616 * 26 24 22 30 30 H 1.09001 * 109.47303 * 270.20615 * 1 2 3 31 31 H 1.08997 * 109.47071 * 30.20248 * 1 2 3 32 32 H 1.08996 * 109.46821 * 150.20063 * 1 2 3 33 33 H 1.07998 * 125.57004 * 359.97438 * 3 2 1 34 34 H 1.07998 * 125.79661 * 180.02562 * 6 4 3 35 35 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47437 * 60.00616 * 13 11 10 37 37 H 1.09001 * 109.47109 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47508 * 300.00018 * 13 11 10 39 39 H 1.09002 * 109.47153 * 300.00319 * 16 14 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 16 14 11 41 41 H 1.08996 * 109.47853 * 180.02562 * 16 14 11 42 42 H 0.96997 * 120.00274 * 24.99518 * 17 14 11 43 43 H 1.08999 * 109.47169 * 300.00043 * 20 18 17 44 44 H 1.08999 * 109.47104 * 60.00393 * 20 18 17 45 45 H 0.96996 * 120.00313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0115 6 6 3.6657 -0.6902 -0.0035 7 6 2.3864 -1.1741 0.0046 8 6 1.9750 -2.5880 0.0102 9 8 0.7938 -2.8776 0.0168 10 7 2.9074 -3.5612 0.0079 11 6 2.4981 -4.9678 0.0129 12 1 1.5856 -5.0827 -0.5720 13 6 2.2416 -5.4191 1.4522 14 6 3.6080 -5.8241 -0.5999 15 1 4.5206 -5.7092 -0.0150 16 6 3.8645 -5.3728 -2.0391 17 7 3.1990 -7.2308 -0.5943 18 6 4.1315 -8.2039 -0.5965 19 8 5.3095 -7.9148 -0.6026 20 6 3.7108 -9.6509 -0.5902 21 16 5.1809 -10.7067 -0.5942 22 6 4.4172 -12.2946 -0.5850 23 1 3.3403 -12.3759 -0.5797 24 6 5.1997 -13.4410 -0.5858 25 7 6.5122 -13.3420 -0.5928 26 14 4.3901 -15.1244 -0.5753 27 1 4.1674 -15.5752 -1.9726 28 1 5.2723 -16.0937 0.1229 29 1 3.0869 -15.0426 0.1320 30 1 -0.3634 0.0037 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5107 33 1 1.9868 2.1059 -0.0004 34 1 4.5665 -1.2859 -0.0066 35 1 3.8495 -3.3301 0.0030 36 1 1.4509 -4.8092 1.8889 37 1 1.9366 -6.4656 1.4559 38 1 3.1542 -5.3042 2.0372 39 1 2.9520 -5.4877 -2.6241 40 1 4.1690 -4.3262 -2.0430 41 1 4.6550 -5.9830 -2.4760 42 1 2.2569 -7.4620 -0.5891 43 1 3.1206 -9.8538 0.3035 44 1 3.1113 -9.8588 -1.4765 45 1 7.0590 -14.1432 -0.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755965060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -40.154093 kcal Electronic energy + Delta-G solvation = -26115.848658 eV Core-core repulsion = 22259.950532 eV Total energy + Delta-G solvation = -3855.898127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56411 -39.95346 -38.99947 -36.64614 -34.01754 -32.75438 -32.42571 -31.58927 -30.44854 -29.37173 -28.42287 -26.86744 -25.48152 -24.35876 -23.15171 -21.16446 -20.61425 -20.02269 -19.58241 -18.71340 -17.86571 -16.81863 -16.62741 -15.69894 -15.60164 -15.29154 -14.97435 -14.79796 -14.53265 -14.32398 -14.02948 -13.87239 -13.74038 -13.47706 -13.43787 -13.17787 -12.95058 -12.69395 -12.64373 -12.42918 -12.39779 -11.97172 -11.75925 -11.69890 -11.47340 -11.05871 -11.02008 -10.83896 -10.74312 -10.03525 -9.81092 -9.43998 -9.34776 -9.06745 -8.99290 -8.86710 -8.66643 -8.23751 -6.49682 -6.21478 -3.91851 1.41337 2.04429 2.69830 2.85190 3.07835 3.18046 3.23029 3.29579 3.34522 3.38287 3.79176 4.20914 4.34072 4.43935 4.66400 4.70837 4.82375 5.00427 5.04489 5.13758 5.14139 5.23949 5.32871 5.39760 5.43911 5.55865 5.59053 5.60509 5.68009 5.74401 5.82151 5.89638 5.93472 5.97814 6.09065 6.14972 6.18003 6.29508 6.43224 6.51419 6.63262 7.00572 7.36797 7.60210 7.68911 8.15923 8.35720 8.59725 9.24105 10.85936 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034773 B = 0.001778 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.039565 B =15743.095989 C =16216.309203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.108 4.108 3 C -0.028 4.028 4 N -0.549 5.549 5 H 0.418 0.582 6 C 0.048 3.952 7 C -0.228 4.228 8 C 0.592 3.408 9 O -0.541 6.541 10 N -0.722 5.722 11 C 0.139 3.861 12 H 0.093 0.907 13 C -0.163 4.163 14 C 0.138 3.862 15 H 0.091 0.909 16 C -0.163 4.163 17 N -0.730 5.730 18 C 0.536 3.464 19 O -0.517 6.517 20 C -0.154 4.154 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 30.107 1.229 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.155 4.155 4 N -0.143 5.143 5 H 0.255 0.745 6 C -0.089 4.089 7 C -0.239 4.239 8 C 0.381 3.619 9 O -0.418 6.418 10 N -0.374 5.374 11 C 0.034 3.966 12 H 0.111 0.889 13 C -0.221 4.221 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.221 4.221 17 N -0.385 5.385 18 C 0.322 3.678 19 O -0.391 6.391 20 C -0.304 4.304 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.874 30.379 1.227 31.171 hybrid contribution -1.332 -1.138 0.012 1.752 sum -8.207 29.241 1.239 30.396 Atomic orbital electron populations 1.20198 0.89265 1.02637 1.02000 1.20577 0.95688 0.90310 1.04896 1.21600 0.82411 0.99288 1.12215 1.41502 1.08389 1.06709 1.57697 0.74546 1.21956 0.98557 0.83960 1.04418 1.20362 0.92705 0.92762 1.18032 1.17355 0.85314 0.83902 0.75318 1.90751 1.17159 1.83643 1.50279 1.45769 1.09577 1.05504 1.76512 1.21093 0.98073 0.80010 0.97423 0.88865 1.22174 1.02322 1.01949 0.95683 1.21006 0.97622 0.81131 0.97040 0.89050 1.22182 1.02594 1.01207 0.96134 1.45940 1.09951 1.04821 1.77784 1.20291 0.85723 0.86950 0.74820 1.90695 1.17325 1.83527 1.47554 1.23536 1.07290 0.94597 1.05026 1.85368 1.03364 0.97889 1.96723 1.22874 0.95141 0.91451 1.58895 0.90903 1.24988 0.94799 0.99249 0.94535 1.70012 1.03664 1.29729 1.46919 0.86171 0.79069 0.81931 0.78353 1.20278 1.20763 1.19681 0.91811 0.92396 0.90262 0.81410 0.81077 0.76857 0.91888 0.91201 0.92259 0.92379 0.91984 0.91418 0.76647 0.89147 0.89160 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.97 36.01 0.36 -0.36 16 2 C -0.11 -0.97 6.35 -102.53 -0.65 -1.62 16 3 C -0.03 -0.17 11.82 -16.82 -0.20 -0.36 16 4 N -0.55 -2.40 5.90 -12.84 -0.08 -2.47 16 5 H 0.42 0.42 8.96 -40.82 -0.37 0.05 16 6 C 0.05 0.28 11.40 -16.84 -0.19 0.09 16 7 C -0.23 -2.11 6.29 -103.35 -0.65 -2.76 16 8 C 0.59 6.54 7.77 -12.60 -0.10 6.45 16 9 O -0.54 -7.79 14.99 5.26 0.08 -7.71 16 10 N -0.72 -6.31 4.37 -54.94 -0.24 -6.55 16 11 C 0.14 1.37 2.21 -67.93 -0.15 1.22 16 12 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 13 C -0.16 -1.65 9.33 37.16 0.35 -1.30 16 14 C 0.14 1.52 2.21 -67.93 -0.15 1.37 16 15 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 16 C -0.16 -1.74 9.33 37.16 0.35 -1.39 16 17 N -0.73 -9.31 4.38 -53.81 -0.24 -9.54 16 18 C 0.54 9.58 7.81 -10.99 -0.09 9.50 16 19 O -0.52 -11.19 15.52 5.55 0.09 -11.11 16 20 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 21 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 26 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.85 6.86 -51.93 -0.36 0.49 16 33 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.17 0.47 7.45 -52.49 -0.39 0.08 16 35 H 0.40 2.53 7.33 -40.82 -0.30 2.23 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 7.44 -51.93 -0.39 0.30 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.40 4.12 8.39 -40.82 -0.34 3.78 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -37.72 393.82 -8.32 -46.04 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.66 Total: 3.09 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.70 Total: -4.89 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.18 Total: -43.91 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.16 Total: -18.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.72 -8.32 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755965060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.885 kcal (2) G-P(sol) polarization free energy of solvation -37.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds