Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34491 * 126.83438 * 2 1 4 4 N 1.36445 * 108.85853 * 180.26077 * 3 2 1 5 5 H 0.97000 * 124.85446 * 179.68558 * 4 3 2 6 6 C 1.34667 * 110.29562 * 359.71861 * 4 3 2 7 7 C 1.36770 * 108.39790 * 359.97438 * 6 4 3 8 8 C 1.47256 * 126.94389 * 180.02562 * 7 6 4 9 9 O 1.21624 * 120.00355 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00032 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00075 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47085 * 35.00197 * 11 10 8 13 13 C 1.53001 * 109.46826 * 274.99922 * 11 10 8 14 14 C 1.53000 * 109.47023 * 155.00453 * 11 10 8 15 15 H 1.09002 * 109.47398 * 59.99929 * 14 11 10 16 16 C 1.52997 * 109.47060 * 299.99760 * 14 11 10 17 17 N 1.46500 * 109.47023 * 179.97438 * 14 11 10 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 14 11 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 14 21 21 S 1.81001 * 109.47021 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99692 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00491 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99834 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00150 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00062 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46773 * 90.00216 * 26 24 22 28 28 H 1.48502 * 109.47309 * 210.00185 * 26 24 22 29 29 H 1.48500 * 109.47082 * 330.00616 * 26 24 22 30 30 H 1.09001 * 109.47303 * 270.20615 * 1 2 3 31 31 H 1.08997 * 109.47071 * 30.20248 * 1 2 3 32 32 H 1.08996 * 109.46821 * 150.20063 * 1 2 3 33 33 H 1.07998 * 125.57004 * 359.97438 * 3 2 1 34 34 H 1.07998 * 125.79661 * 180.02562 * 6 4 3 35 35 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47437 * 60.00616 * 13 11 10 37 37 H 1.09001 * 109.47109 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47508 * 300.00018 * 13 11 10 39 39 H 1.09002 * 109.47153 * 300.00319 * 16 14 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 16 14 11 41 41 H 1.08996 * 109.47853 * 180.02562 * 16 14 11 42 42 H 0.96997 * 120.00274 * 24.99518 * 17 14 11 43 43 H 1.08999 * 109.47169 * 300.00043 * 20 18 17 44 44 H 1.08999 * 109.47104 * 60.00393 * 20 18 17 45 45 H 0.96996 * 120.00313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0115 6 6 3.6657 -0.6902 -0.0035 7 6 2.3864 -1.1741 0.0046 8 6 1.9750 -2.5880 0.0102 9 8 0.7938 -2.8776 0.0168 10 7 2.9074 -3.5612 0.0079 11 6 2.4981 -4.9678 0.0129 12 1 1.5856 -5.0827 -0.5720 13 6 2.2416 -5.4191 1.4522 14 6 3.6080 -5.8241 -0.5999 15 1 4.5206 -5.7092 -0.0150 16 6 3.8645 -5.3728 -2.0391 17 7 3.1990 -7.2308 -0.5943 18 6 4.1315 -8.2039 -0.5965 19 8 5.3095 -7.9148 -0.6026 20 6 3.7108 -9.6509 -0.5902 21 16 5.1809 -10.7067 -0.5942 22 6 4.4172 -12.2946 -0.5850 23 1 3.3403 -12.3759 -0.5797 24 6 5.1997 -13.4410 -0.5858 25 7 6.5122 -13.3420 -0.5928 26 14 4.3901 -15.1244 -0.5753 27 1 4.1674 -15.5752 -1.9726 28 1 5.2723 -16.0937 0.1229 29 1 3.0869 -15.0426 0.1320 30 1 -0.3634 0.0037 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5107 33 1 1.9868 2.1059 -0.0004 34 1 4.5665 -1.2859 -0.0066 35 1 3.8495 -3.3301 0.0030 36 1 1.4509 -4.8092 1.8889 37 1 1.9366 -6.4656 1.4559 38 1 3.1542 -5.3042 2.0372 39 1 2.9520 -5.4877 -2.6241 40 1 4.1690 -4.3262 -2.0430 41 1 4.6550 -5.9830 -2.4760 42 1 2.2569 -7.4620 -0.5891 43 1 3.1206 -9.8538 0.3035 44 1 3.1113 -9.8588 -1.4765 45 1 7.0590 -14.1432 -0.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755965060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -67.745772 kcal Electronic energy + Delta-G solvation = -26117.045123 eV Core-core repulsion = 22259.950532 eV Total energy + Delta-G solvation = -3857.094592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07475 -41.03280 -40.07334 -37.71913 -35.08600 -34.57121 -33.30290 -32.63356 -31.41590 -30.11497 -29.71315 -27.64085 -27.41437 -25.18609 -23.98543 -22.06220 -21.73868 -20.81835 -20.27287 -19.79679 -19.15362 -17.99557 -17.66906 -16.87070 -16.81701 -16.56713 -16.41337 -16.03190 -15.72727 -15.23576 -14.96685 -14.78528 -14.68111 -14.46902 -14.43682 -14.29028 -14.02442 -13.72353 -13.56175 -13.27437 -13.22990 -13.19736 -13.14396 -12.88846 -12.68953 -12.59551 -12.46473 -12.28734 -11.78435 -11.68050 -11.13257 -11.00723 -10.82431 -10.30700 -10.26067 -10.01857 -9.50899 -9.14992 -8.64152 -8.33727 -6.10841 0.82494 1.27015 1.42867 1.46597 1.52855 1.57080 1.63510 1.98729 2.28364 2.44646 2.60301 2.64487 3.00477 3.33521 3.45296 3.91966 3.99255 4.02821 4.07386 4.15374 4.32416 4.33281 4.42314 4.49499 4.51767 4.54722 4.71097 4.73433 4.77062 4.89026 4.91948 4.94607 5.01929 5.19401 5.22363 5.27091 5.34580 5.42582 5.43501 5.57756 5.85805 6.00218 6.21057 6.48697 6.65156 6.74115 7.07998 7.24766 7.39502 8.75336 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034773 B = 0.001778 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.039565 B =15743.095989 C =16216.309203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.151 4.151 3 C -0.013 4.013 4 N -0.534 5.534 5 H 0.437 0.563 6 C 0.068 3.932 7 C -0.270 4.270 8 C 0.589 3.411 9 O -0.585 6.585 10 N -0.710 5.710 11 C 0.151 3.849 12 H 0.086 0.914 13 C -0.159 4.159 14 C 0.143 3.857 15 H 0.085 0.915 16 C -0.158 4.158 17 N -0.707 5.707 18 C 0.541 3.459 19 O -0.559 6.559 20 C -0.132 4.132 21 S -0.146 6.146 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.910 5.910 26 Si 0.997 3.003 27 H -0.268 1.268 28 H -0.278 1.278 29 H -0.259 1.259 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.197 0.803 34 H 0.204 0.796 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 31.543 1.223 32.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.157 4.157 3 C -0.142 4.142 4 N -0.129 5.129 5 H 0.278 0.722 6 C -0.070 4.070 7 C -0.281 4.281 8 C 0.380 3.620 9 O -0.466 6.466 10 N -0.362 5.362 11 C 0.045 3.955 12 H 0.105 0.895 13 C -0.218 4.218 14 C 0.038 3.962 15 H 0.103 0.897 16 C -0.216 4.216 17 N -0.361 5.361 18 C 0.327 3.673 19 O -0.436 6.436 20 C -0.283 4.283 21 S 0.081 5.919 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.818 3.182 27 H -0.194 1.194 28 H -0.203 1.203 29 H -0.183 1.183 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.214 0.786 34 H 0.221 0.779 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.430 31.871 1.220 32.749 hybrid contribution -1.182 -1.400 0.016 1.832 sum -8.612 30.472 1.236 31.689 Atomic orbital electron populations 1.20095 0.90019 1.02058 1.01431 1.20810 0.95923 0.91522 1.07420 1.21962 0.82508 0.99814 1.09877 1.41573 1.08739 1.06587 1.56014 0.72224 1.22359 0.98329 0.84678 1.01647 1.20391 0.94511 0.91851 1.21328 1.17714 0.84857 0.84959 0.74453 1.90723 1.18967 1.84353 1.52537 1.45608 1.10110 1.04634 1.75865 1.20871 0.97116 0.80463 0.97024 0.89549 1.22137 1.02026 1.01918 0.95686 1.21063 0.97707 0.79886 0.97560 0.89719 1.22131 1.01956 1.02198 0.95309 1.45685 1.09963 1.04857 1.75625 1.19935 0.85629 0.86912 0.74824 1.90688 1.19119 1.83895 1.49938 1.23390 1.03792 0.94369 1.06785 1.85503 1.09231 1.00123 1.97035 1.23217 0.95602 0.91921 1.58778 0.90015 1.26093 0.95349 1.03822 0.93792 1.70171 1.05441 1.31023 1.48045 0.84981 0.78302 0.76108 0.78764 1.19369 1.20284 1.18309 0.92459 0.90484 0.93208 0.78566 0.77892 0.75254 0.92878 0.90913 0.92081 0.91964 0.89607 0.93792 0.74850 0.87234 0.87357 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.97 71.24 0.71 -0.69 16 2 C -0.15 -2.57 6.35 -18.51 -0.12 -2.69 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.86 16 4 N -0.53 -2.86 5.90 -194.55 -1.15 -4.01 16 5 H 0.44 -0.90 8.96 -92.71 -0.83 -1.73 16 6 C 0.07 0.60 11.40 83.91 0.96 1.56 16 7 C -0.27 -4.73 6.29 -19.04 -0.12 -4.85 16 8 C 0.59 12.90 7.77 86.61 0.67 13.57 16 9 O -0.58 -17.46 14.99 -4.11 -0.06 -17.52 16 10 N -0.71 -11.55 4.37 -445.97 -1.95 -13.50 16 11 C 0.15 2.80 2.21 44.99 0.10 2.90 16 12 H 0.09 1.80 7.58 -2.39 -0.02 1.78 16 13 C -0.16 -3.08 9.33 71.98 0.67 -2.41 16 14 C 0.14 2.98 2.21 44.99 0.10 3.08 16 15 H 0.08 1.97 7.58 -2.39 -0.02 1.96 16 16 C -0.16 -3.15 9.33 71.98 0.67 -2.48 16 17 N -0.71 -17.06 4.38 -442.53 -1.94 -19.00 16 18 C 0.54 19.03 7.81 87.66 0.68 19.71 16 19 O -0.56 -24.43 15.52 -3.05 -0.05 -24.47 16 20 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 21 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 22 C -0.55 -31.14 9.50 67.96 0.65 -30.49 16 23 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 24 C 0.01 0.81 5.49 84.86 0.47 1.28 16 25 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 26 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 29 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.16 6.86 -2.39 -0.02 1.14 16 33 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.20 0.30 7.45 -2.91 -0.02 0.28 16 35 H 0.41 4.34 7.33 -92.70 -0.68 3.66 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.35 7.44 -2.39 -0.02 1.33 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.30 7.45 -2.39 -0.02 1.28 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.41 7.71 8.39 -92.71 -0.78 6.93 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -85.86 393.82 1.62 -84.24 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -1.25 Total: 18.50 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.86 Total: -5.34 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -4.75 Total: -91.88 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.11 Total: -42.00 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -85.86 1.62 -84.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755965060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.499 kcal (2) G-P(sol) polarization free energy of solvation -85.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds