Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28978 * 124.83589 * 2 1 4 4 C 1.31781 * 117.20761 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.85011 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47107 * 90.02681 * 5 4 3 7 7 C 1.53003 * 109.47404 * 174.99301 * 6 5 4 8 8 C 1.52997 * 109.47295 * 294.99547 * 6 5 4 9 9 C 1.34513 * 114.28960 * 359.97438 * 4 3 2 10 10 N 1.39421 * 126.07794 * 180.02562 * 9 4 3 11 11 C 1.34772 * 120.00036 * 179.97438 * 10 9 4 12 12 O 1.21423 * 120.00144 * 359.97438 * 11 10 9 13 13 C 1.49259 * 120.00258 * 179.97438 * 11 10 9 14 14 O 1.21370 * 119.99742 * 354.16325 * 13 11 10 15 15 N 1.34779 * 120.00291 * 174.16833 * 13 11 10 16 16 C 1.46499 * 119.99875 * 3.61718 * 15 13 11 17 17 C 1.46498 * 119.99772 * 183.62387 * 15 13 11 18 18 C 1.50697 * 109.47298 * 89.99978 * 17 15 13 19 19 H 1.07999 * 120.00003 * 359.97438 * 18 17 15 20 20 C 1.37883 * 119.99888 * 179.97438 * 18 17 15 21 21 N 1.31512 * 119.99832 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99699 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47031 * 90.00483 * 22 20 18 24 24 H 1.48508 * 109.46766 * 210.00106 * 22 20 18 25 25 H 1.48499 * 109.47544 * 329.99972 * 22 20 18 26 26 S 1.70957 * 124.83794 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46634 * 90.00398 * 1 2 3 28 28 H 1.08995 * 109.46789 * 210.00164 * 1 2 3 29 29 H 1.09000 * 109.47051 * 330.00707 * 1 2 3 30 30 H 1.09004 * 109.46984 * 210.01994 * 5 4 3 31 31 H 1.08996 * 109.47922 * 330.02505 * 5 4 3 32 32 H 1.09006 * 109.47090 * 54.99444 * 6 5 4 33 33 H 1.09001 * 109.46415 * 59.99964 * 7 6 5 34 34 H 1.08997 * 109.47322 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47436 * 300.00080 * 7 6 5 36 36 H 1.08997 * 109.47361 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47159 * 300.00425 * 8 6 5 38 38 H 1.09006 * 109.46684 * 59.99654 * 8 6 5 39 39 H 0.96998 * 119.99714 * 359.97438 * 10 9 4 40 40 H 1.08998 * 109.46980 * 83.99487 * 16 15 13 41 41 H 1.09001 * 109.47239 * 203.99400 * 16 15 13 42 42 H 1.08998 * 109.47413 * 323.99838 * 16 15 13 43 43 H 1.09007 * 109.46595 * 209.99938 * 17 15 13 44 44 H 1.09001 * 109.47455 * 329.99270 * 17 15 13 45 45 H 0.96997 * 120.00067 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2438 1.0586 0.0000 4 6 3.5499 0.8837 0.0005 5 6 4.5282 2.0300 0.0000 6 6 4.8594 2.4185 1.4424 7 6 5.9450 3.4967 1.4438 8 6 3.6023 2.9597 2.1262 9 6 3.9356 -0.4050 0.0015 10 7 5.2505 -0.8684 0.0028 11 6 5.4980 -2.1932 0.0042 12 8 4.5759 -2.9832 0.0049 13 6 6.9057 -2.6895 0.0050 14 8 7.8257 -1.9051 -0.1026 15 7 7.1553 -4.0085 0.1250 16 6 6.0446 -4.9625 0.1750 17 6 8.5372 -4.4881 0.2056 18 6 8.9705 -4.5315 1.6483 19 1 8.2853 -4.2313 2.4272 20 6 10.2419 -4.9543 1.9738 21 7 10.6203 -4.9917 3.2328 22 14 11.4268 -5.4741 0.6265 23 1 12.2046 -4.2947 0.1693 24 1 12.3558 -6.5051 1.1551 25 1 10.6621 -6.0359 -0.5158 26 16 2.4836 -1.4032 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 5.4411 1.7284 -0.5136 31 1 4.0872 2.8840 -0.5141 32 1 5.2175 1.5416 1.9818 33 1 5.5868 4.3735 0.9044 34 1 6.1806 3.7737 2.4713 35 1 6.8406 3.1112 0.9566 36 1 3.8381 3.2360 3.1539 37 1 3.2441 3.8365 1.5868 38 1 2.8289 2.1915 2.1252 39 1 5.9871 -0.2374 0.0026 40 1 5.7282 -5.2052 -0.8394 41 1 6.3689 -5.8715 0.6817 42 1 5.2104 -4.5207 0.7199 43 1 8.6001 -5.4884 -0.2229 44 1 9.1889 -3.8135 -0.3495 45 1 11.5148 -5.2888 3.4618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283154788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -23.643735 kcal Electronic energy + Delta-G solvation = -27378.170339 eV Core-core repulsion = 23522.988155 eV Total energy + Delta-G solvation = -3855.182184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.97881 -40.02867 -38.29829 -36.34776 -35.89414 -34.67992 -32.61074 -31.84115 -28.93402 -28.66815 -27.36703 -27.16148 -26.19233 -24.34235 -23.03315 -22.07083 -20.63817 -20.20986 -19.40907 -18.06302 -17.19414 -17.11891 -16.74930 -16.07649 -15.91894 -15.30483 -15.22152 -15.08516 -14.42022 -14.21369 -14.02217 -13.96518 -13.58067 -13.38965 -12.89260 -12.76490 -12.69828 -12.57052 -12.47056 -12.34007 -12.25463 -11.90858 -11.78187 -11.53956 -11.27495 -11.23409 -11.01601 -10.97449 -10.86001 -10.73825 -10.63482 -10.24924 -9.69402 -9.60838 -9.10742 -9.06373 -8.70589 -8.15185 -7.96107 -6.20087 -4.21441 0.51614 1.01532 1.62406 1.69916 2.42583 2.69605 3.21818 3.27744 3.29482 3.45111 3.77715 4.00594 4.29093 4.50331 4.71303 4.72283 4.80261 4.94263 5.09984 5.12211 5.22113 5.27273 5.43028 5.54365 5.57479 5.60340 5.69754 5.71550 5.78912 5.80923 5.86863 5.93767 6.01499 6.15013 6.22773 6.27423 6.38366 6.40711 6.69602 6.75421 6.97274 7.42100 7.51104 7.71785 7.85023 8.23959 8.43334 8.81675 9.37716 10.92775 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003101 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.617415 B = 9026.439958 C =10369.754970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.021 4.021 3 N -0.444 5.444 4 C 0.025 3.975 5 C -0.038 4.038 6 C -0.093 4.093 7 C -0.148 4.148 8 C -0.140 4.140 9 C -0.004 4.004 10 N -0.602 5.602 11 C 0.501 3.499 12 O -0.489 6.489 13 C 0.505 3.495 14 O -0.520 6.520 15 N -0.553 5.553 16 C 0.067 3.933 17 C 0.212 3.788 18 C -0.538 4.538 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.892 5.892 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.265 1.265 26 S 0.234 5.766 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.430 0.570 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.043 0.957 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.144 11.129 -7.335 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.298 4.298 3 N -0.159 5.159 4 C -0.111 4.111 5 C -0.078 4.078 6 C -0.112 4.112 7 C -0.205 4.205 8 C -0.198 4.198 9 C -0.222 4.222 10 N -0.250 5.250 11 C 0.284 3.716 12 O -0.364 6.364 13 C 0.285 3.715 14 O -0.397 6.397 15 N -0.284 5.284 16 C -0.076 4.076 17 C 0.092 3.908 18 C -0.576 4.576 19 H 0.095 0.905 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.190 1.190 26 S 0.486 5.514 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.271 0.729 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.552 10.259 -7.269 22.411 hybrid contribution 1.735 0.644 -0.468 1.909 sum -16.817 10.903 -7.737 21.484 Atomic orbital electron populations 1.20305 0.85488 1.03750 1.03402 1.27167 1.02055 0.93547 1.07040 1.66114 1.03182 1.31783 1.14844 1.19954 0.90829 0.91866 1.08426 1.20210 0.95338 0.94730 0.97541 1.21114 0.96251 0.98861 0.95004 1.21845 0.98219 0.98394 1.02040 1.21778 0.97237 1.01220 0.99524 1.23483 0.90478 0.96351 1.11871 1.42594 1.05030 1.08078 1.69257 1.21158 0.91882 0.81892 0.76627 1.90613 1.46096 1.53082 1.46562 1.19172 0.87009 0.84319 0.81032 1.90761 1.44772 1.54594 1.49605 1.47781 1.09986 1.04376 1.66250 1.22284 0.89782 0.93728 1.01825 1.19930 0.76721 0.95088 0.99015 1.21244 0.99855 1.45838 0.90667 0.90548 1.24836 0.97654 0.94748 0.95500 1.69882 1.19582 1.46743 1.16752 0.86848 0.81522 0.79044 0.82295 1.19731 1.20856 1.18951 1.84798 0.92212 1.06266 1.68104 0.90103 0.90442 0.89753 0.90828 0.89730 0.91253 0.92608 0.92431 0.92342 0.93220 0.92691 0.92307 0.72936 0.92925 0.90642 0.88718 0.94206 0.93931 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.46 36.01 0.38 -0.13 16 2 C -0.02 -0.23 7.38 -13.48 -0.10 -0.33 16 3 N -0.44 -5.56 9.67 -7.88 -0.08 -5.64 16 4 C 0.03 0.32 5.30 -83.93 -0.44 -0.13 16 5 C -0.04 -0.40 4.87 -27.88 -0.14 -0.54 16 6 C -0.09 -0.96 2.91 -90.62 -0.26 -1.23 16 7 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 8 C -0.14 -1.44 8.97 37.16 0.33 -1.11 16 9 C 0.00 -0.05 7.17 -15.41 -0.11 -0.16 16 10 N -0.60 -8.58 5.38 -11.10 -0.06 -8.64 16 11 C 0.50 8.26 7.73 -11.68 -0.09 8.17 16 12 O -0.49 -7.95 10.75 5.43 0.06 -7.89 16 13 C 0.50 9.98 7.73 -11.67 -0.09 9.89 16 14 O -0.52 -11.45 16.04 5.48 0.09 -11.37 16 15 N -0.55 -11.32 2.86 -183.54 -0.52 -11.84 16 16 C 0.07 1.11 9.55 59.85 0.57 1.68 16 17 C 0.21 4.98 4.23 -5.20 -0.02 4.96 16 18 C -0.54 -14.93 9.94 -34.44 -0.34 -15.27 16 19 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 22 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 26 S 0.23 2.86 20.41 -107.50 -2.19 0.66 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.72 7.22 -51.93 -0.37 0.34 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.69 6.75 -51.93 -0.35 0.34 16 39 H 0.43 5.67 7.10 -40.82 -0.29 5.38 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 42 H 0.09 1.55 5.35 -51.94 -0.28 1.27 16 43 H 0.04 0.88 7.13 -51.93 -0.37 0.51 16 44 H 0.04 1.04 6.80 -51.93 -0.35 0.69 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -31.96 382.50 -7.58 -39.54 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.67 Total: 2.46 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.07 Total: 6.87 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.11 Total: -52.07 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.15 Total: -19.26 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.19 Total: 0.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.96 -7.58 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283154788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.901 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds