Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47165 * 2 1 4 4 C 1.33530 * 122.71451 * 124.97484 * 3 2 1 5 5 S 1.76171 * 108.05609 * 179.97438 * 4 3 2 6 6 C 1.70968 * 90.33839 * 0.02562 * 5 4 3 7 7 N 1.38748 * 124.94284 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00065 * 0.02562 * 7 6 5 9 9 O 1.21387 * 119.99988 * 359.97438 * 8 7 6 10 10 C 1.49308 * 119.99865 * 180.02562 * 8 7 6 11 11 O 1.21356 * 120.00475 * 359.97438 * 10 8 7 12 12 N 1.34776 * 119.99865 * 180.02562 * 10 8 7 13 13 C 1.46501 * 120.00412 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47831 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47151 * 300.00637 * 14 13 12 16 16 C 1.53005 * 109.46671 * 59.99989 * 14 13 12 17 17 C 1.52999 * 109.47515 * 179.97438 * 14 13 12 18 18 C 1.50694 * 109.46869 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00403 * 0.02562 * 18 17 14 20 20 C 1.37883 * 119.99495 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99720 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00322 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47492 * 89.99650 * 22 20 18 24 24 H 1.48502 * 109.47164 * 209.99949 * 22 20 18 25 25 H 1.48507 * 109.46740 * 329.99588 * 22 20 18 26 26 N 1.29680 * 110.11303 * 359.97438 * 6 5 4 27 27 H 1.08998 * 109.47002 * 59.99169 * 1 2 3 28 28 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46898 * 300.00298 * 1 2 3 30 30 H 1.08995 * 109.46786 * 240.00195 * 2 1 3 31 31 H 1.08999 * 109.46559 * 120.00534 * 2 1 3 32 32 H 1.08003 * 125.97344 * 0.02562 * 4 3 2 33 33 H 0.96995 * 119.99865 * 180.02562 * 7 6 5 34 34 H 0.97005 * 120.00011 * 359.97438 * 12 10 8 35 35 H 1.09002 * 109.47124 * 300.00262 * 13 12 10 36 36 H 1.09010 * 109.46635 * 59.99445 * 13 12 10 37 37 H 1.08999 * 109.47322 * 59.99338 * 15 14 13 38 38 H 1.08995 * 109.47066 * 179.97438 * 15 14 13 39 39 H 1.09010 * 109.46827 * 299.99150 * 15 14 13 40 40 H 1.08996 * 109.47106 * 60.00169 * 16 14 13 41 41 H 1.09001 * 109.47164 * 180.02562 * 16 14 13 42 42 H 1.08999 * 109.47237 * 300.00315 * 16 14 13 43 43 H 1.08996 * 109.47166 * 300.00385 * 17 14 13 44 44 H 1.08996 * 109.46620 * 60.00261 * 17 14 13 45 45 H 0.97004 * 119.99515 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8801 1.8865 0.9206 5 16 3.2079 3.5784 0.5549 6 6 2.1713 3.4964 -0.8022 7 7 1.9048 4.5510 -1.6635 8 6 2.4824 5.7513 -1.4582 9 8 3.2354 5.9098 -0.5194 10 6 2.1951 6.8863 -2.3847 11 8 1.4418 6.7280 -3.3230 12 7 2.7731 8.0864 -2.1797 13 6 2.4917 9.2000 -3.0890 14 6 3.2675 10.4380 -2.6349 15 6 2.8380 10.8171 -1.2162 16 6 4.7670 10.1339 -2.6497 17 6 2.9741 11.6008 -3.5851 18 6 3.7388 12.8199 -3.1380 19 1 4.3712 12.7703 -2.2639 20 6 3.6319 13.9985 -3.8456 21 7 4.2989 15.0627 -3.4552 22 14 2.5387 14.0842 -5.3579 23 1 1.1682 14.4909 -4.9557 24 1 3.0905 15.0795 -6.3118 25 1 2.4883 12.7501 -6.0084 26 7 1.6704 2.3050 -0.9094 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2934 1.3241 1.7448 33 1 1.3027 4.4244 -2.4134 34 1 3.3755 8.2129 -1.4299 35 1 2.7973 8.9298 -4.0998 36 1 1.4234 9.4168 -3.0782 37 1 3.0474 9.9885 -0.5396 38 1 3.3911 11.6988 -0.8926 39 1 1.7697 11.0337 -1.2057 40 1 5.0730 9.8639 -3.6604 41 1 5.3197 11.0158 -2.3257 42 1 4.9764 9.3054 -1.9731 43 1 3.2804 11.3305 -4.5956 44 1 1.9059 11.8175 -3.5749 45 1 4.2233 15.8919 -3.9528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358001283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = -34.713587 kcal Electronic energy + Delta-G solvation = -26337.784846 eV Core-core repulsion = 22482.122637 eV Total energy + Delta-G solvation = -3855.662209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39922 -40.18836 -39.12254 -37.45917 -35.90095 -33.92034 -33.25940 -32.18014 -29.69368 -28.11078 -27.30339 -26.64019 -25.79190 -24.59582 -23.11773 -22.27370 -21.42637 -20.24814 -18.86056 -18.55848 -17.71751 -17.13747 -16.89762 -16.64668 -16.57287 -15.59571 -15.45914 -14.95522 -14.64177 -14.41920 -14.15755 -14.01610 -13.70573 -13.60037 -13.59496 -12.97389 -12.83772 -12.50345 -12.44831 -12.33093 -12.04395 -11.64019 -11.34313 -11.24493 -11.21250 -11.10785 -11.04039 -10.69228 -10.61123 -10.12103 -10.07588 -10.07231 -9.80933 -9.59420 -9.51947 -9.23487 -9.07159 -8.63715 -8.58274 -6.08636 -4.06561 0.23882 0.77917 1.07747 1.48164 1.76861 2.42359 2.87388 3.16389 3.27634 3.36193 3.38609 4.03769 4.16041 4.40964 4.64437 4.85133 4.94137 5.11004 5.16593 5.22354 5.24712 5.33575 5.37148 5.51300 5.52403 5.67978 5.80094 5.90059 5.94370 5.97123 5.99610 6.11448 6.21103 6.21457 6.50618 6.51676 6.77722 6.91089 6.94679 6.98101 7.10466 7.22785 7.27258 7.41803 7.69909 7.72860 8.47448 8.95192 9.53402 11.03926 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033193 B = 0.001961 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.350000 B =14275.256241 C =14858.483416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.094 3.906 4 C -0.316 4.316 5 S 0.247 5.753 6 C 0.239 3.761 7 N -0.598 5.598 8 C 0.508 3.492 9 O -0.482 6.482 10 C 0.512 3.488 11 O -0.515 6.515 12 N -0.679 5.679 13 C 0.121 3.879 14 C -0.064 4.064 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.001 4.001 18 C -0.513 4.513 19 H 0.079 0.921 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 N -0.503 5.503 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.176 0.824 33 H 0.436 0.564 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 -27.878 8.439 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.039 4.039 4 C -0.457 4.457 5 S 0.497 5.503 6 C -0.128 4.128 7 N -0.249 5.249 8 C 0.289 3.711 9 O -0.354 6.354 10 C 0.290 3.710 11 O -0.392 6.392 12 N -0.332 5.332 13 C -0.001 4.001 14 C -0.064 4.064 15 C -0.190 4.190 16 C -0.189 4.189 17 C -0.039 4.039 18 C -0.551 4.551 19 H 0.097 0.903 20 C -0.134 4.134 21 N -0.541 5.541 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 N -0.226 5.226 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.194 0.806 33 H 0.277 0.723 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.667 -26.840 8.338 28.343 hybrid contribution -0.957 -0.674 -0.952 1.509 sum -4.624 -27.514 7.385 28.861 Atomic orbital electron populations 1.21682 0.94267 1.01656 1.02682 1.20146 0.96716 0.88819 1.03011 1.19826 0.96652 0.96651 0.90764 1.27308 1.09208 1.01236 1.07921 1.84977 1.41125 1.04933 1.19226 1.23337 1.01130 0.90605 0.97691 1.42390 1.46258 1.07032 1.29204 1.20824 0.80567 0.83535 0.86186 1.90728 1.33631 1.81434 1.29630 1.19246 0.82752 0.83705 0.85279 1.90818 1.35446 1.82723 1.30165 1.46019 1.46033 1.09381 1.31736 1.21951 1.00951 0.84626 0.92544 1.20740 0.94901 0.93311 0.97476 1.21817 1.01406 1.01092 0.94644 1.21813 0.95504 1.01039 1.00582 1.19591 0.96860 0.93147 0.94285 1.21055 1.27472 0.93073 1.13485 0.90320 1.25006 0.95420 0.95724 0.97284 1.69902 1.42281 1.01575 1.40309 0.86856 0.81093 0.78182 0.83595 1.20365 1.21481 1.19008 1.66044 1.28104 0.99299 1.29173 0.91736 0.92306 0.92846 0.90207 0.90191 0.80621 0.72335 0.74757 0.90733 0.90745 0.94814 0.90556 0.93225 0.93220 0.90554 0.94817 0.96237 0.96684 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.81 37.16 0.36 -0.60 16 2 C -0.05 -0.31 6.43 -27.88 -0.18 -0.49 16 3 C 0.09 0.88 6.07 -84.21 -0.51 0.37 16 4 C -0.32 -2.65 11.05 29.08 0.32 -2.33 16 5 S 0.25 2.45 20.21 -107.50 -2.17 0.28 16 6 C 0.24 2.68 8.18 -87.55 -0.72 1.96 16 7 N -0.60 -6.39 5.39 -13.55 -0.07 -6.47 16 8 C 0.51 5.89 7.85 -11.65 -0.09 5.80 16 9 O -0.48 -5.98 13.93 5.46 0.08 -5.90 16 10 C 0.51 6.56 7.88 -11.65 -0.09 6.47 16 11 O -0.52 -7.63 16.47 5.49 0.09 -7.54 16 12 N -0.68 -8.73 4.95 -60.78 -0.30 -9.03 16 13 C 0.12 1.80 4.56 -4.04 -0.02 1.78 16 14 C -0.06 -1.09 0.54 -154.51 -0.08 -1.17 16 15 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 16 C -0.13 -2.16 8.05 37.16 0.30 -1.87 16 17 C 0.00 -0.02 3.11 -27.89 -0.09 -0.11 16 18 C -0.51 -13.28 8.20 -34.44 -0.28 -13.56 16 19 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 20 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 21 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 22 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 26 N -0.50 -5.65 10.39 -11.33 -0.12 -5.77 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.38 8.03 -51.93 -0.42 -0.04 16 32 H 0.18 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.44 4.20 8.29 -40.82 -0.34 3.87 16 34 H 0.41 4.94 5.63 -40.82 -0.23 4.71 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 38 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 39 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 42 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 43 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 44 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 379.82 15.07 5.72 5.72 Total: -1.00 -30.16 379.82 -7.97 -38.14 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.43 Total: 4.06 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.87 Total: -3.86 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.28 Total: -47.12 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.17 Total: -13.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.17 Total: 0.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.16 -7.97 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358001283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.423 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds