Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46736 * 2 1 4 4 N 1.31789 * 122.85595 * 269.97604 * 3 2 1 5 5 C 1.28970 * 117.20767 * 180.02562 * 4 3 2 6 6 S 1.70959 * 110.32853 * 359.76153 * 5 4 3 7 7 C 1.34509 * 122.85796 * 90.00369 * 3 2 1 8 8 N 1.39424 * 126.07867 * 359.93302 * 7 3 2 9 9 C 1.34773 * 120.00405 * 180.02562 * 8 7 3 10 10 O 1.21423 * 120.00002 * 0.02562 * 9 8 7 11 11 C 1.49265 * 120.00288 * 179.73111 * 9 8 7 12 12 O 1.21373 * 119.99624 * 0.27204 * 11 9 8 13 13 N 1.34769 * 120.00108 * 180.27985 * 11 9 8 14 14 C 1.46507 * 120.00057 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47159 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47169 * 300.00168 * 15 14 13 17 17 C 1.53001 * 109.47512 * 59.99831 * 15 14 13 18 18 C 1.53000 * 109.47271 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47207 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00280 * 359.97438 * 19 18 15 21 21 C 1.37879 * 119.99581 * 179.97438 * 19 18 15 22 22 N 1.31512 * 120.00502 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99575 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47245 * 60.00392 * 23 21 19 25 25 H 1.48504 * 109.46709 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47176 * 299.99915 * 23 21 19 27 27 H 1.08993 * 109.47262 * 299.99980 * 1 2 3 28 28 H 1.09003 * 109.47207 * 60.00114 * 1 2 3 29 29 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47068 * 240.00219 * 2 1 3 31 31 H 1.08990 * 109.47585 * 119.99836 * 2 1 3 32 32 H 1.08002 * 124.83539 * 180.02562 * 5 4 3 33 33 H 0.97001 * 119.99481 * 0.02562 * 8 7 3 34 34 H 0.97000 * 120.00347 * 359.97438 * 13 11 9 35 35 H 1.08994 * 109.46849 * 299.99825 * 14 13 11 36 36 H 1.08998 * 109.46926 * 59.99633 * 14 13 11 37 37 H 1.08996 * 109.47588 * 60.00005 * 16 15 14 38 38 H 1.08998 * 109.47212 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.46853 * 300.00214 * 16 15 14 40 40 H 1.09008 * 109.46854 * 59.99729 * 17 15 14 41 41 H 1.08990 * 109.47680 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47077 * 300.00768 * 17 15 14 43 43 H 1.09008 * 109.46645 * 299.99994 * 18 15 14 44 44 H 1.08998 * 109.47049 * 59.99604 * 18 15 14 45 45 H 0.96997 * 120.00009 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2710 2.0948 -1.1071 5 6 2.6991 3.3047 -0.9801 6 16 2.8371 3.7155 0.6736 7 6 2.2755 2.1089 1.1299 8 7 2.1074 1.6369 2.4310 9 6 2.3894 2.4355 3.4794 10 8 2.7894 3.5663 3.2908 11 6 2.2036 1.9321 4.8723 12 8 1.8033 0.8019 5.0607 13 7 2.4802 2.7327 5.9205 14 6 2.2973 2.2388 7.2877 15 6 2.6801 3.3368 8.2820 16 6 4.1446 3.7269 8.0723 17 6 1.7894 4.5606 8.0585 18 6 2.4898 2.8208 9.7098 19 6 2.8662 3.9025 10.6892 20 1 3.2075 4.8619 10.3294 21 6 2.7748 3.6673 12.0447 22 7 2.3597 2.4989 12.4829 23 14 3.2421 5.0079 13.2587 24 1 2.3776 6.1957 13.0417 25 1 3.0572 4.5071 14.6445 26 1 4.6636 5.3865 13.0553 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 2.9328 3.9658 -1.8016 33 1 1.7874 0.7336 2.5816 34 1 2.8004 3.6358 5.7700 35 1 1.2541 1.9605 7.4369 36 1 2.9322 1.3673 7.4471 37 1 4.2808 4.0943 7.0552 38 1 4.4175 4.5088 8.7810 39 1 4.7792 2.8551 8.2315 40 1 0.7460 4.2826 8.2079 41 1 2.0618 5.3426 8.7671 42 1 1.9254 4.9279 7.0413 43 1 1.4465 2.5426 9.8595 44 1 3.1246 1.9492 9.8688 45 1 2.2951 2.3337 13.4365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358003354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -62.786306 kcal Electronic energy + Delta-G solvation = -26674.846556 eV Core-core repulsion = 22817.967023 eV Total energy + Delta-G solvation = -3856.879533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.23538 -40.99297 -40.03645 -38.71855 -36.66331 -35.28865 -34.23138 -33.94176 -30.11712 -29.19113 -28.23307 -27.97862 -26.75517 -25.52204 -24.27455 -24.22709 -21.99079 -21.20936 -20.32165 -19.31321 -18.84077 -18.35343 -17.88941 -17.60578 -17.43092 -16.69744 -16.38362 -16.21981 -15.59368 -15.54785 -15.10180 -14.99923 -14.87223 -14.77285 -14.67598 -14.38661 -13.93654 -13.79464 -13.38457 -13.11598 -12.87867 -12.85631 -12.74368 -12.62168 -12.59471 -12.32376 -12.23590 -12.16056 -12.02314 -11.87957 -11.55570 -11.25254 -10.93821 -10.85427 -10.52478 -10.48900 -10.35043 -10.06982 -9.27007 -8.12883 -6.19748 -0.55796 0.06463 0.26568 0.67084 1.11123 1.44113 1.45105 1.52308 1.67056 1.98149 2.36706 2.46481 3.17907 3.21950 3.31197 3.85909 3.89006 4.04907 4.08819 4.19556 4.31475 4.39838 4.57579 4.64731 4.65954 4.68692 4.70352 4.94299 4.96781 5.00477 5.09659 5.12146 5.14456 5.20916 5.34048 5.41006 5.50828 5.51256 5.52719 5.57091 5.79601 5.91046 6.05361 6.32206 6.35562 6.71165 6.72772 6.94841 7.47690 8.99041 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.002083 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.619802 B =13436.116641 C =14185.494023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.025 3.975 4 N -0.473 5.473 5 C -0.022 4.022 6 S 0.232 5.768 7 C -0.033 4.033 8 N -0.589 5.589 9 C 0.506 3.494 10 O -0.498 6.498 11 C 0.514 3.486 12 O -0.539 6.539 13 N -0.674 5.674 14 C 0.137 3.863 15 C -0.065 4.065 16 C -0.126 4.126 17 C -0.126 4.126 18 C 0.041 3.959 19 C -0.514 4.514 20 H 0.070 0.930 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.955 3.045 24 H -0.268 1.268 25 H -0.292 1.292 26 H -0.268 1.268 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.231 0.769 33 H 0.436 0.564 34 H 0.420 0.580 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.064 0.936 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 0.612 -27.559 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C -0.112 4.112 4 N -0.186 5.186 5 C -0.319 4.319 6 S 0.483 5.517 7 C -0.250 4.250 8 N -0.236 5.236 9 C 0.287 3.713 10 O -0.373 6.373 11 C 0.293 3.707 12 O -0.416 6.416 13 N -0.327 5.327 14 C 0.014 3.986 15 C -0.065 4.065 16 C -0.183 4.183 17 C -0.183 4.183 18 C 0.003 3.997 19 C -0.552 4.552 20 H 0.088 0.912 21 C -0.200 4.200 22 N -0.577 5.577 23 Si 0.780 3.220 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.193 1.193 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.278 0.722 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.159 1.245 -27.341 27.370 hybrid contribution -0.207 -0.601 1.175 1.336 sum -0.049 0.644 -26.166 26.174 Atomic orbital electron populations 1.21717 0.93668 1.03042 1.01666 1.20179 0.96680 0.87985 1.04182 1.20491 1.05739 0.99994 0.84946 1.66254 1.14644 1.07276 1.30476 1.29095 1.03409 0.96427 1.02941 1.84936 1.59694 1.07205 0.99854 1.23597 1.12493 1.00694 0.88247 1.42279 1.62122 1.18265 1.00975 1.20348 0.78831 0.85536 0.86562 1.90741 1.43414 1.18351 1.84827 1.19562 0.79831 0.85744 0.85535 1.90801 1.45765 1.19135 1.85937 1.45844 1.63732 1.17832 1.05296 1.21549 1.01388 0.97216 0.78483 1.20732 0.96680 0.94657 0.94478 1.21736 0.94344 1.01343 1.00888 1.21735 0.98476 0.97231 1.00860 1.18963 0.94919 0.95268 0.90536 1.21552 1.42688 0.99920 0.91050 0.91158 1.25886 0.95798 0.97486 1.00830 1.70091 1.48911 1.24201 1.14500 0.85656 0.79111 0.79529 0.77670 1.19311 1.21765 1.19326 0.93296 0.92947 0.90147 0.89225 0.89632 0.75263 0.72165 0.74099 0.91585 0.91588 0.91721 0.92509 0.93853 0.93855 0.92507 0.91723 0.98994 0.98986 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.05 -0.71 6.12 29.85 0.18 -0.53 16 3 C 0.02 0.46 6.03 41.71 0.25 0.71 16 4 N -0.47 -9.08 10.52 -190.98 -2.01 -11.09 16 5 C -0.02 -0.32 12.21 130.66 1.60 1.28 16 6 S 0.23 4.01 20.45 -56.49 -1.16 2.86 16 7 C -0.03 -0.64 7.17 82.63 0.59 -0.05 16 8 N -0.59 -11.35 5.38 -307.35 -1.65 -13.00 16 9 C 0.51 11.43 7.85 87.21 0.68 12.11 16 10 O -0.50 -12.08 14.10 -3.47 -0.05 -12.13 16 11 C 0.51 13.21 7.88 87.21 0.69 13.90 16 12 O -0.54 -16.12 16.47 -3.32 -0.05 -16.18 16 13 N -0.67 -17.40 4.95 -464.60 -2.30 -19.70 16 14 C 0.14 4.31 4.56 86.38 0.39 4.71 16 15 C -0.06 -2.30 0.54 -52.18 -0.03 -2.32 16 16 C -0.13 -4.06 8.05 71.98 0.58 -3.48 16 17 C -0.13 -4.05 8.05 71.98 0.58 -3.47 16 18 C 0.04 1.96 4.04 29.85 0.12 2.08 16 19 C -0.51 -26.65 7.65 25.60 0.20 -26.45 16 20 H 0.07 3.43 5.68 -2.91 -0.02 3.41 16 21 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 22 N -0.94 -55.38 13.29 21.45 0.28 -55.09 16 23 Si 0.95 42.79 29.54 68.60 2.03 44.81 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 0.98 7.22 -2.39 -0.02 0.97 16 32 H 0.23 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.44 7.19 7.09 -92.71 -0.66 6.53 16 34 H 0.42 9.65 5.63 -92.71 -0.52 9.12 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 1.64 6.86 -2.39 -0.02 1.63 16 38 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 42 H 0.06 1.64 6.86 -2.39 -0.02 1.63 16 43 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -65.59 381.88 1.95 -63.63 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.14 Total: 18.23 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 7.01 Total: -2.35 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -5.68 Total: -98.88 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.10 Total: -28.31 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.16 Total: 2.86 kcal Total: -65.59 1.95 -63.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358003354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.848 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds