Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33644 * 122.74749 * 2 1 4 4 S 1.76198 * 107.92235 * 179.75979 * 3 2 1 5 5 C 1.70971 * 90.28245 * 0.28437 * 4 3 2 6 6 C 1.50704 * 124.91442 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.67948 * 193.28466 * 6 5 4 8 8 C 1.53293 * 109.71202 * 313.82102 * 6 5 4 9 9 O 1.42958 * 109.22170 * 172.04428 * 8 6 5 10 10 C 1.42976 * 114.20256 * 297.43773 * 9 8 6 11 11 C 1.53286 * 109.21572 * 62.52416 * 10 9 8 12 12 N 1.47150 * 109.68193 * 72.76910 * 6 5 4 13 13 C 1.34777 * 120.98140 * 9.67985 * 12 6 5 14 14 O 1.21279 * 120.00272 * 355.57620 * 13 12 6 15 15 C 1.50705 * 119.99627 * 175.57394 * 13 12 6 16 16 H 1.09002 * 109.46675 * 40.00269 * 15 13 12 17 17 N 1.46901 * 109.46676 * 160.00108 * 15 13 12 18 18 C 1.53000 * 109.47275 * 279.99958 * 15 13 12 19 19 C 1.52999 * 109.47237 * 174.99973 * 18 15 13 20 20 C 1.50692 * 109.47232 * 180.02562 * 19 18 15 21 21 H 1.07999 * 120.00340 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00254 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00260 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99539 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47484 * 90.00148 * 24 22 20 26 26 H 1.48503 * 109.46851 * 210.00089 * 24 22 20 27 27 H 1.48507 * 109.47559 * 329.99794 * 24 22 20 28 28 N 1.29025 * 110.17152 * 359.71013 * 5 4 3 29 29 H 1.09002 * 109.46527 * 270.01988 * 1 2 3 30 30 H 1.08996 * 109.47263 * 30.01852 * 1 2 3 31 31 H 1.09001 * 109.47134 * 150.02629 * 1 2 3 32 32 H 1.08005 * 126.03538 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.51452 * 291.96751 * 8 6 5 34 34 H 1.08997 * 109.51010 * 52.12103 * 8 6 5 35 35 H 1.08999 * 109.48212 * 302.61758 * 10 9 8 36 36 H 1.09001 * 109.54475 * 182.46796 * 10 9 8 37 37 H 1.08997 * 109.68305 * 188.01200 * 11 10 9 38 38 H 1.09002 * 109.68525 * 67.49984 * 11 10 9 39 39 H 1.00895 * 111.00253 * 60.00390 * 17 15 13 40 40 H 1.00900 * 110.99659 * 183.95377 * 17 15 13 41 41 H 1.09002 * 109.46997 * 295.00517 * 18 15 13 42 42 H 1.09006 * 109.46562 * 55.00223 * 18 15 13 43 43 H 1.09002 * 109.47225 * 300.00612 * 19 18 15 44 44 H 1.09002 * 109.46850 * 59.99917 * 19 18 15 45 45 H 0.96998 * 119.99717 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0070 5 6 3.5040 -0.9817 0.0008 6 6 4.4836 -2.1270 0.0020 7 1 3.9642 -3.0546 -0.2385 8 6 5.5836 -1.8676 -1.0337 9 8 6.6026 -2.8609 -0.8969 10 6 7.2686 -2.8469 0.3682 11 6 6.2547 -3.1554 1.4757 12 7 5.1119 -2.2403 1.3278 13 6 4.6544 -1.5266 2.3756 14 8 3.7645 -0.7182 2.2165 15 6 5.2489 -1.7332 3.7450 16 1 6.3282 -1.8574 3.6575 17 7 4.9570 -0.5651 4.5867 18 6 4.6412 -2.9849 4.3813 19 6 5.3331 -3.2654 5.7167 20 6 4.7351 -4.4986 6.3431 21 1 3.9411 -5.0295 5.8389 22 6 5.2014 -4.9492 7.5599 23 7 4.6798 -6.0257 8.1063 24 14 6.5741 -4.0305 8.4322 25 1 5.9896 -2.9940 9.3206 26 1 7.3712 -4.9854 9.2434 27 1 7.4530 -3.3818 7.4262 28 7 2.2200 -1.1083 0.0004 29 1 -0.3632 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.8391 2.1309 -0.0004 33 1 5.1587 -1.9176 -2.0363 34 1 6.0135 -0.8797 -0.8685 35 1 7.7054 -1.8628 0.5382 36 1 8.0555 -3.6012 0.3744 37 1 6.7195 -3.0079 2.4505 38 1 5.9135 -4.1866 1.3842 39 1 3.9620 -0.4285 4.6832 40 1 5.3995 -0.6504 5.4895 41 1 3.5761 -2.8261 4.5501 42 1 4.7805 -3.8356 3.7141 43 1 6.3982 -3.4241 5.5478 44 1 5.1940 -2.4146 6.3837 45 1 5.0077 -6.3424 8.9625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424181951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -41.452081 kcal Electronic energy + Delta-G solvation = -28386.320871 eV Core-core repulsion = 24530.366459 eV Total energy + Delta-G solvation = -3855.954412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99358 -40.43269 -39.57951 -37.29463 -36.01301 -34.91451 -34.03568 -32.11854 -31.76783 -29.59128 -28.47274 -28.18742 -26.33071 -25.54285 -23.78894 -23.12203 -21.93800 -20.74521 -20.29817 -19.22996 -18.73515 -18.17201 -17.71789 -17.05705 -16.74212 -16.60432 -16.30275 -16.21776 -16.00696 -15.71448 -15.44689 -15.15214 -14.98928 -14.67211 -14.63956 -14.30780 -14.02474 -13.86742 -13.60071 -13.46725 -13.29246 -13.13894 -13.01044 -12.64384 -12.51458 -12.17065 -12.14468 -11.93798 -11.89542 -11.69619 -11.44360 -11.30080 -10.95921 -10.78964 -10.54252 -10.25279 -9.74923 -9.65880 -9.08530 -8.31141 -6.37527 -0.17729 0.58221 0.90492 1.37958 1.39259 1.47974 1.50896 1.54041 2.06259 2.35171 2.55630 3.00868 3.04458 3.33795 3.63647 3.66858 3.81913 3.89758 3.93842 3.97790 4.09481 4.19677 4.21683 4.31746 4.42017 4.48301 4.52340 4.53904 4.66637 4.74071 4.80377 4.84980 4.88163 4.88567 4.98953 5.19054 5.30905 5.40900 5.42097 5.60237 5.92780 5.97136 6.18339 6.23238 6.42388 6.70933 6.90297 7.01007 7.27454 8.85913 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.003499 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.819189 B = 7999.925642 C = 9026.472385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.048 3.952 3 C -0.268 4.268 4 S 0.161 5.839 5 C 0.071 3.929 6 C 0.183 3.817 7 H 0.098 0.902 8 C 0.066 3.934 9 O -0.377 6.377 10 C 0.046 3.954 11 C 0.063 3.937 12 N -0.612 5.612 13 C 0.520 3.480 14 O -0.536 6.536 15 C 0.085 3.915 16 H 0.122 0.878 17 N -0.826 5.826 18 C -0.115 4.115 19 C -0.002 4.002 20 C -0.536 4.536 21 H 0.021 0.979 22 C 0.003 3.997 23 N -0.953 5.953 24 Si 0.955 3.045 25 H -0.270 1.270 26 H -0.288 1.288 27 H -0.232 1.232 28 N -0.503 5.503 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.343 0.657 40 H 0.355 0.645 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.023 0.977 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 14.683 -20.665 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.407 4.407 4 S 0.417 5.583 5 C -0.206 4.206 6 C 0.076 3.924 7 H 0.116 0.884 8 C -0.012 4.012 9 O -0.295 6.295 10 C -0.031 4.031 11 C -0.058 4.058 12 N -0.348 5.348 13 C 0.309 3.691 14 O -0.412 6.412 15 C -0.030 4.030 16 H 0.140 0.860 17 N -0.357 5.357 18 C -0.155 4.155 19 C -0.039 4.039 20 C -0.574 4.574 21 H 0.040 0.960 22 C -0.194 4.194 23 N -0.594 5.594 24 Si 0.778 3.222 25 H -0.195 1.195 26 H -0.214 1.214 27 H -0.155 1.155 28 N -0.221 5.221 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.212 0.788 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.155 0.845 40 H 0.171 0.829 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.041 0.959 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.649 15.337 -21.300 26.848 hybrid contribution -1.699 -1.033 1.976 2.803 sum 3.951 14.304 -19.324 24.364 Atomic orbital electron populations 1.20368 0.86027 1.03998 1.02809 1.20530 0.99119 0.86548 1.02196 1.26997 0.95230 1.04407 1.14105 1.83220 1.07615 1.00953 1.66492 1.26174 0.93920 0.98511 1.01992 1.20420 0.92010 0.95272 0.84671 0.88432 1.23035 0.86972 0.92332 0.98906 1.88013 1.50536 1.55742 1.35222 1.23258 0.94037 1.04305 0.81460 1.22865 0.86441 0.93990 1.02539 1.48292 1.34162 1.44635 1.07748 1.20895 0.82607 0.79233 0.86389 1.90779 1.31405 1.35391 1.83627 1.21453 1.01612 0.90245 0.89728 0.86050 1.58773 1.17784 1.39008 1.20148 1.21982 0.98797 0.96739 0.98009 1.19468 0.96606 0.94851 0.92988 1.21407 1.19731 1.11220 1.05065 0.96035 1.26101 0.99633 0.95647 0.98004 1.70088 1.44793 1.25622 1.18882 0.85594 0.79142 0.78418 0.79084 1.19480 1.21355 1.15479 1.65947 1.05130 1.33199 1.17804 0.91361 0.88350 0.91216 0.78846 0.85316 0.91564 0.91183 0.84312 0.86879 0.89761 0.84451 0.82940 0.94857 0.92116 0.94519 0.95909 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.31 71.24 0.73 -0.78 16 2 C 0.05 1.32 6.74 41.52 0.28 1.60 16 3 C -0.27 -6.42 11.13 66.78 0.74 -5.68 16 4 S 0.16 3.90 20.19 -56.49 -1.14 2.76 16 5 C 0.07 1.99 3.79 88.52 0.34 2.32 16 6 C 0.18 4.42 3.59 44.22 0.16 4.58 16 7 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 8 C 0.07 1.17 6.16 72.08 0.44 1.61 16 9 O -0.38 -6.72 10.74 -148.98 -1.60 -8.32 16 10 C 0.05 0.65 6.99 72.08 0.50 1.15 16 11 C 0.06 1.19 5.93 86.35 0.51 1.71 16 12 N -0.61 -15.21 3.02 -797.67 -2.41 -17.62 16 13 C 0.52 15.75 6.85 87.66 0.60 16.35 16 14 O -0.54 -18.77 11.42 -3.03 -0.03 -18.81 16 15 C 0.08 2.48 2.39 44.17 0.11 2.59 16 16 H 0.12 2.96 6.32 -2.39 -0.02 2.95 16 17 N -0.83 -24.24 8.94 -171.79 -1.54 -25.77 16 18 C -0.12 -4.25 4.72 30.59 0.14 -4.11 16 19 C 0.00 -0.07 3.81 29.85 0.11 0.04 16 20 C -0.54 -29.98 9.66 25.60 0.25 -29.73 16 21 H 0.02 1.36 7.99 -2.91 -0.02 1.34 16 22 C 0.00 0.16 5.47 84.66 0.46 0.63 16 23 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 24 Si 0.96 41.75 27.47 68.60 1.88 43.63 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.23 -8.84 6.54 99.48 0.65 -8.19 16 28 N -0.50 -15.88 10.34 -179.39 -1.85 -17.73 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.07 1.10 7.32 -2.39 -0.02 1.08 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.96 5.55 -2.39 -0.01 1.95 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.34 10.91 8.58 -89.70 -0.77 10.14 16 40 H 0.36 9.77 7.55 -89.69 -0.68 9.09 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 2.24 7.58 -2.38 -0.02 2.22 16 43 H 0.04 1.44 7.20 -2.39 -0.02 1.42 16 44 H 0.02 0.92 6.29 -2.39 -0.02 0.90 16 45 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -74.97 368.39 -1.47 -76.45 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.47 Total: 32.02 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.39 Total: -7.73 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.50 Total: -120.00 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.63 Total: -27.12 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.14 Total: 2.76 kcal Total: -74.97 -1.47 -76.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424181951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.995 kcal (2) G-P(sol) polarization free energy of solvation -74.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds