Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28969 * 124.83797 * 2 1 4 4 C 1.31786 * 117.21073 * 180.02562 * 3 2 1 5 5 C 1.34513 * 114.28245 * 359.97438 * 4 3 2 6 6 N 1.39429 * 126.07570 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00324 * 180.02562 * 6 5 4 8 8 O 1.21420 * 119.99844 * 0.02562 * 7 6 5 9 9 C 1.49257 * 120.00519 * 179.72182 * 7 6 5 10 10 O 1.21376 * 119.99622 * 354.54611 * 9 7 6 11 11 N 1.34770 * 120.00297 * 174.53794 * 9 7 6 12 12 C 1.46504 * 120.00223 * 3.69267 * 11 9 7 13 13 C 1.50695 * 109.46848 * 83.10568 * 12 11 9 14 14 H 1.07998 * 120.00530 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99875 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00329 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99751 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47074 * 89.99720 * 17 15 13 19 19 H 1.48493 * 109.47002 * 209.99738 * 17 15 13 20 20 H 1.48498 * 109.47302 * 330.00120 * 17 15 13 21 21 C 1.46504 * 120.00035 * 183.68995 * 11 9 7 22 22 C 1.52994 * 109.47333 * 94.94565 * 21 11 9 23 23 C 1.52998 * 109.47343 * 179.97438 * 22 21 11 24 24 C 1.52999 * 109.46903 * 65.00298 * 23 22 21 25 25 C 1.53003 * 109.47304 * 185.00184 * 23 22 21 26 26 S 1.70956 * 124.83515 * 180.27163 * 2 1 3 27 27 H 1.08992 * 109.47023 * 89.97036 * 1 2 3 28 28 H 1.08994 * 109.47172 * 209.97710 * 1 2 3 29 29 H 1.09004 * 109.46724 * 329.97583 * 1 2 3 30 30 H 1.07998 * 122.85628 * 180.02562 * 4 3 2 31 31 H 0.97002 * 119.99912 * 0.02562 * 6 5 4 32 32 H 1.08999 * 109.46976 * 203.10625 * 12 11 9 33 33 H 1.09004 * 109.46567 * 323.10881 * 12 11 9 34 34 H 0.97001 * 120.00244 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.46897 * 214.95101 * 21 11 9 36 36 H 1.08998 * 109.47353 * 334.94364 * 21 11 9 37 37 H 1.08998 * 109.47107 * 300.00022 * 22 21 11 38 38 H 1.09006 * 109.46928 * 59.99914 * 22 21 11 39 39 H 1.09003 * 109.47518 * 305.00128 * 23 22 21 40 40 H 1.09000 * 109.47284 * 299.99725 * 24 23 22 41 41 H 1.08999 * 109.47465 * 60.00033 * 24 23 22 42 42 H 1.09002 * 109.47067 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.46908 * 59.99954 * 25 23 22 44 44 H 1.09001 * 109.47081 * 180.02562 * 25 23 22 45 45 H 1.08999 * 109.46980 * 299.99915 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2438 1.0585 0.0000 4 6 3.5500 0.8836 -0.0005 5 6 3.9355 -0.4051 -0.0004 6 7 5.2504 -0.8687 -0.0014 7 6 5.4980 -2.1935 -0.0017 8 8 4.5758 -2.9833 -0.0016 9 6 6.9056 -2.6898 -0.0091 10 8 7.8253 -1.9048 -0.1146 11 7 7.1554 -4.0095 0.1017 12 6 6.0449 -4.9640 0.1478 13 6 5.5900 -5.2735 -1.2551 14 1 6.0794 -4.8064 -2.0969 15 6 4.5497 -6.1539 -1.4640 16 7 4.1523 -6.4237 -2.6883 17 14 3.7037 -6.9624 -0.0080 18 1 2.5688 -6.1149 0.4384 19 1 3.1955 -8.2985 -0.4101 20 1 4.6741 -7.1165 1.1054 21 6 8.5375 -4.4897 0.1759 22 6 8.9400 -4.6609 1.6420 23 6 10.3831 -5.1629 1.7195 24 6 11.3256 -4.0937 1.1633 25 6 10.7447 -5.4529 3.1776 26 16 2.4835 -1.4032 -0.0067 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 4.2511 1.7050 -0.0002 31 1 5.9872 -0.2377 -0.0019 32 1 6.3750 -5.8822 0.6337 33 1 5.2177 -4.5319 0.7111 34 1 3.4202 -7.0428 -2.8352 35 1 8.6172 -5.4481 -0.3371 36 1 9.1995 -3.7666 -0.3005 37 1 8.8603 -3.7024 2.1549 38 1 8.2780 -5.3840 2.1184 39 1 10.4823 -6.0758 1.1322 40 1 11.0681 -3.8871 0.1245 41 1 11.2265 -3.1809 1.7506 42 1 12.3537 -4.4516 1.2181 43 1 10.0733 -6.2146 3.5738 44 1 11.7730 -5.8102 3.2329 45 1 10.6456 -4.5401 3.7650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439602539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -21.379717 kcal Electronic energy + Delta-G solvation = -27618.364358 eV Core-core repulsion = 23763.280349 eV Total energy + Delta-G solvation = -3855.084009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68298 -39.47304 -38.39038 -36.82380 -35.65299 -34.42565 -32.49732 -31.44936 -29.71917 -28.00181 -27.47920 -27.16137 -24.98068 -23.71477 -22.90970 -22.07956 -20.49375 -19.95961 -19.35098 -17.81511 -17.22048 -17.05113 -16.57237 -16.01167 -15.65922 -15.27719 -15.07481 -14.80209 -14.31601 -14.20159 -14.03730 -13.68816 -13.53181 -13.35495 -13.23378 -12.71985 -12.58232 -12.44208 -12.38161 -12.23046 -12.12989 -11.83644 -11.29312 -11.19223 -11.18618 -10.98429 -10.95776 -10.83321 -10.60025 -10.55120 -10.34998 -10.21942 -9.59577 -9.46328 -8.94755 -8.86888 -8.58314 -8.09119 -7.90965 -6.13480 -4.12411 0.79478 1.27927 1.83724 1.96872 2.59949 2.95425 3.25875 3.30611 3.33602 3.58972 3.82743 4.35715 4.38903 4.68151 4.90452 4.93925 4.98108 5.13777 5.20123 5.30143 5.40767 5.47473 5.50573 5.56706 5.63691 5.71090 5.79949 5.80457 5.83096 5.93060 5.98049 6.06071 6.12457 6.21522 6.34716 6.36669 6.41445 6.45444 6.81944 6.92015 7.11275 7.48048 7.73617 7.88996 7.93604 8.29806 8.44622 8.86792 9.46127 10.99591 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009977 B = 0.004117 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.701842 B = 6799.726180 C = 8827.738127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.032 4.032 3 N -0.456 5.456 4 C -0.022 4.022 5 C 0.003 3.997 6 N -0.613 5.613 7 C 0.487 3.513 8 O -0.433 6.433 9 C 0.518 3.482 10 O -0.550 6.550 11 N -0.550 5.550 12 C 0.191 3.809 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.082 3.918 16 N -0.894 5.894 17 Si 0.871 3.129 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.112 3.888 22 C -0.129 4.129 23 C -0.094 4.094 24 C -0.149 4.149 25 C -0.145 4.145 26 S 0.255 5.745 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.172 0.828 31 H 0.426 0.574 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 7.766 9.524 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.309 4.309 3 N -0.171 5.171 4 C -0.177 4.177 5 C -0.216 4.216 6 N -0.261 5.261 7 C 0.268 3.732 8 O -0.302 6.302 9 C 0.300 3.700 10 O -0.431 6.431 11 N -0.279 5.279 12 C 0.071 3.929 13 C -0.561 4.561 14 H 0.091 0.909 15 C -0.121 4.121 16 N -0.532 5.532 17 Si 0.698 3.302 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.011 4.011 22 C -0.168 4.168 23 C -0.113 4.113 24 C -0.206 4.206 25 C -0.203 4.203 26 S 0.506 5.494 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.189 0.811 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.437 6.811 9.353 11.824 hybrid contribution 0.516 0.547 0.466 0.885 sum 2.953 7.358 9.819 12.620 Atomic orbital electron populations 1.20288 0.85680 1.03541 1.03430 1.27261 1.02227 0.93932 1.07497 1.66208 1.03698 1.32086 1.15125 1.21469 0.91852 0.93758 1.10621 1.23831 0.90762 0.96930 1.10114 1.42562 1.04659 1.08026 1.70882 1.20720 0.91840 0.81872 0.78764 1.90832 1.45140 1.52217 1.42040 1.19267 0.87585 0.83870 0.79288 1.90691 1.45344 1.55392 1.51633 1.47911 1.08822 1.05241 1.65891 1.20479 0.84796 0.87794 0.99825 1.21089 1.17615 1.26770 0.90630 0.90949 1.24727 0.95977 0.95959 0.95445 1.69881 1.28030 1.35409 1.19917 0.86924 0.80898 0.79029 0.83315 1.19526 1.21225 1.19168 1.21648 0.81846 1.01114 0.96474 1.22018 0.95908 1.01709 0.97154 1.21050 0.94492 0.99024 0.96737 1.21893 0.98582 0.98620 1.01501 1.21823 1.00972 1.01403 0.96059 1.85319 0.92075 1.05182 1.66836 0.90109 0.90477 0.89946 0.81064 0.73483 0.95016 0.91845 0.92524 0.89623 0.89606 0.91851 0.91533 0.90898 0.92158 0.92733 0.93061 0.92733 0.92861 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.46 36.01 0.38 -0.35 16 2 C -0.03 -0.46 7.38 -13.48 -0.10 -0.56 16 3 N -0.46 -6.97 10.54 -11.68 -0.12 -7.09 16 4 C -0.02 -0.31 11.39 -18.89 -0.22 -0.52 16 5 C 0.00 0.04 7.25 -15.41 -0.11 -0.07 16 6 N -0.61 -9.63 5.41 -11.10 -0.06 -9.69 16 7 C 0.49 9.26 7.72 -11.68 -0.09 9.17 16 8 O -0.43 -9.36 9.99 5.44 0.05 -9.30 16 9 C 0.52 10.05 7.66 -11.68 -0.09 9.96 16 10 O -0.55 -10.59 15.97 5.47 0.09 -10.50 16 11 N -0.55 -10.79 2.48 -175.64 -0.44 -11.23 16 12 C 0.19 4.27 3.86 -5.19 -0.02 4.25 16 13 C -0.52 -13.99 8.86 -34.44 -0.31 -14.30 16 14 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 17 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 21 C 0.11 1.82 5.21 -4.04 -0.02 1.80 16 22 C -0.13 -1.76 5.01 -26.74 -0.13 -1.90 16 23 C -0.09 -1.05 2.92 -90.62 -0.26 -1.32 16 24 C -0.15 -1.60 8.95 37.16 0.33 -1.27 16 25 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 26 S 0.26 4.16 20.41 -107.50 -2.19 1.97 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.43 5.60 8.30 -40.82 -0.34 5.26 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.06 1.46 4.84 -51.93 -0.25 1.21 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 36 H 0.09 1.39 5.66 -51.93 -0.29 1.10 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -31.56 382.85 -7.87 -39.43 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.68 Total: 4.43 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.40 Total: 5.99 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.16 Total: -53.75 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.14 Total: -19.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.19 Total: 1.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.56 -7.87 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439602539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.050 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds