Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29408 * 125.69756 * 2 1 4 4 N 1.26397 * 116.47749 * 179.74172 * 3 2 1 5 5 C 1.29417 * 116.47353 * 0.54244 * 4 3 2 6 6 C 1.50698 * 125.69944 * 179.76423 * 5 4 3 7 7 O 1.42903 * 109.46975 * 89.68677 * 6 5 4 8 8 C 1.42905 * 113.99721 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.46808 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00306 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00030 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.63336 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 233.68039 * 12 11 9 14 14 C 1.53035 * 109.31327 * 305.29292 * 13 12 11 15 15 C 1.53007 * 109.46118 * 181.38770 * 14 13 12 16 16 C 1.50699 * 109.47144 * 174.99788 * 15 14 13 17 17 H 1.07998 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99734 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99971 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47041 * 59.99764 * 20 18 16 22 22 H 1.48490 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46976 * 300.00213 * 20 18 16 24 24 C 1.53038 * 109.54175 * 61.36680 * 14 13 12 25 25 C 1.47207 * 120.81118 * 0.14238 * 11 9 8 26 26 S 1.71220 * 125.69341 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47309 * 269.95602 * 1 2 3 28 28 H 1.08999 * 109.46734 * 29.96421 * 1 2 3 29 29 H 1.08999 * 109.47036 * 149.95653 * 1 2 3 30 30 H 1.09011 * 109.46857 * 329.69451 * 6 5 4 31 31 H 1.09000 * 109.47560 * 209.69123 * 6 5 4 32 32 H 1.08992 * 109.47241 * 60.00227 * 8 7 6 33 33 H 1.09000 * 109.47072 * 299.99682 * 8 7 6 34 34 H 1.09002 * 109.58861 * 113.82042 * 12 11 9 35 35 H 1.08996 * 109.58519 * 353.53933 * 12 11 9 36 36 H 1.09003 * 109.49975 * 65.24379 * 13 12 11 37 37 H 1.09000 * 109.49553 * 185.30642 * 13 12 11 38 38 H 1.09005 * 109.46002 * 301.35718 * 14 13 12 39 39 H 1.08996 * 109.46924 * 295.00300 * 15 14 13 40 40 H 1.09004 * 109.46756 * 54.99920 * 15 14 13 41 41 H 0.97006 * 119.99658 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.49557 * 58.58503 * 24 14 13 43 43 H 1.08996 * 109.50003 * 178.68400 * 24 14 13 44 44 H 1.08996 * 109.53610 * 6.53286 * 25 11 9 45 45 H 1.09002 * 109.68003 * 246.22753 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8484 0.0051 5 6 3.8937 -0.3875 -0.0012 6 6 5.3232 -0.8643 -0.0020 7 8 5.7757 -1.0154 1.3450 8 6 7.1274 -1.4656 1.4570 9 6 7.4964 -1.5896 2.9128 10 8 6.6823 -1.3187 3.7701 11 7 8.7312 -2.0016 3.2623 12 6 9.1057 -2.1280 4.6774 13 6 10.3859 -1.3240 4.9254 14 6 11.4698 -1.7841 3.9479 15 6 12.7606 -1.0074 4.2156 16 6 13.8614 -1.5446 3.3377 17 1 13.6606 -2.3588 2.6572 18 6 15.1251 -0.9972 3.4040 19 7 15.3700 -0.0067 4.2338 20 14 16.4895 -1.6627 2.3154 21 1 16.1053 -1.5068 0.8894 22 1 17.7422 -0.9089 2.5752 23 1 16.7052 -3.1009 2.6155 24 6 11.0076 -1.5253 2.5121 25 6 9.7342 -2.3321 2.2367 26 16 2.5060 -1.3906 -0.0006 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 5.9493 -0.1346 -0.5159 31 1 5.3862 -1.8233 -0.5163 32 1 7.7905 -0.7483 0.9736 33 1 7.2281 -2.4370 0.9730 34 1 9.2807 -3.1769 4.9168 35 1 8.3029 -1.7393 5.3039 36 1 10.1849 -0.2636 4.7729 37 1 10.7251 -1.4866 5.9484 38 1 11.6526 -2.8501 4.0838 39 1 12.6019 0.0481 3.9946 40 1 13.0425 -1.1210 5.2624 41 1 16.2590 0.3786 4.2801 42 1 10.8007 -0.4630 2.3824 43 1 11.7895 -1.8316 1.8174 44 1 9.3455 -2.0765 1.2511 45 1 9.9609 -3.3976 2.2750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566917388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = -26.092923 kcal Electronic energy + Delta-G solvation = -26166.727846 eV Core-core repulsion = 22311.439458 eV Total energy + Delta-G solvation = -3855.288389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67829 -40.16973 -38.30025 -37.12715 -34.07167 -33.82383 -32.26422 -31.23234 -30.70363 -28.71431 -27.68635 -26.67083 -24.72624 -24.43161 -22.90044 -21.85345 -20.41077 -19.98020 -19.75516 -18.76391 -17.61785 -16.92681 -16.53699 -16.33807 -16.14176 -15.79188 -15.40204 -14.90645 -14.57183 -14.42070 -13.81532 -13.77471 -13.70117 -13.59058 -13.31117 -13.18614 -12.94814 -12.86966 -12.44071 -12.34468 -12.14545 -11.83988 -11.23021 -11.04851 -10.87428 -10.85249 -10.72822 -10.65969 -10.50969 -10.21828 -10.18698 -10.16361 -10.04876 -9.80182 -9.60222 -9.31446 -9.02251 -8.44247 -8.38238 -6.03050 -4.05636 -0.07085 0.45414 0.92473 2.06427 2.59214 2.69183 3.28913 3.34850 3.35544 3.36622 3.76917 4.10380 4.30514 4.41730 4.48671 4.58105 4.77662 4.82470 4.86635 4.91970 5.00795 5.04916 5.10396 5.30633 5.33965 5.34752 5.40411 5.46829 5.59931 5.67965 5.92922 6.00904 6.28417 6.32364 6.42887 6.49541 6.65845 6.89912 6.93530 7.05640 7.44853 7.62926 7.77442 7.96169 8.15420 8.19033 8.37871 9.00636 9.58264 11.08028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.001811 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.173450 B =15460.424662 C =15918.422846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 N -0.262 5.262 4 N -0.236 5.236 5 C -0.020 4.020 6 C 0.142 3.858 7 O -0.356 6.356 8 C 0.046 3.954 9 C 0.516 3.484 10 O -0.529 6.529 11 N -0.604 5.604 12 C 0.114 3.886 13 C -0.130 4.130 14 C -0.081 4.081 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.120 4.120 25 C 0.102 3.898 26 S 0.194 5.806 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.308 -6.958 -11.340 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.101 5.101 4 N -0.075 5.075 5 C -0.299 4.299 6 C 0.062 3.938 7 O -0.273 6.273 8 C -0.034 4.034 9 C 0.302 3.698 10 O -0.405 6.405 11 N -0.339 5.339 12 C -0.008 4.008 13 C -0.168 4.168 14 C -0.099 4.099 15 C -0.010 4.010 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.158 4.158 25 C -0.021 4.021 26 S 0.437 5.563 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.664 -6.308 -10.649 29.396 hybrid contribution 1.258 -0.212 -0.791 1.501 sum -25.406 -6.520 -11.440 28.616 Atomic orbital electron populations 1.20422 0.83695 1.04819 1.04628 1.29363 1.04556 0.92016 1.03663 1.71500 0.96765 1.26738 1.15083 1.71433 1.06551 1.17052 1.12488 1.28678 1.02168 0.92772 1.06278 1.20674 0.86618 1.00889 0.85631 1.88062 1.27400 1.88082 1.23772 1.22339 0.84283 1.00890 0.95904 1.20006 0.82060 0.77578 0.90122 1.90715 1.49162 1.48996 1.51623 1.48168 1.11357 1.66119 1.08275 1.21683 0.98155 1.00330 0.80627 1.22037 0.94288 0.99867 1.00621 1.21193 0.96005 1.00399 0.92339 1.19126 0.89785 0.95105 0.96965 1.21185 0.94539 1.17744 1.22215 0.92652 1.25027 0.98735 0.95077 0.95607 1.69953 1.21748 1.24768 1.36856 0.86700 0.81519 0.79001 0.81004 1.20307 1.21370 1.20307 1.21925 0.94933 0.99566 0.99403 1.22048 0.89743 1.00321 0.89947 1.83669 0.97253 1.11296 1.64064 0.88834 0.88640 0.89537 0.89141 0.90164 0.89405 0.89802 0.91621 0.89615 0.91999 0.90978 0.92265 0.96607 0.96546 0.92957 0.92139 0.89501 0.90767 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.49 36.01 0.38 0.05 16 2 C -0.02 -0.16 7.53 -13.30 -0.10 -0.26 16 3 N -0.26 -3.28 11.66 32.58 0.38 -2.90 16 4 N -0.24 -3.18 11.66 32.58 0.38 -2.80 16 5 C -0.02 -0.22 7.16 -13.30 -0.10 -0.31 16 6 C 0.14 1.25 6.53 36.00 0.24 1.49 16 7 O -0.36 -4.45 9.86 -55.14 -0.54 -5.00 16 8 C 0.05 0.48 4.77 36.00 0.17 0.65 16 9 C 0.52 7.60 7.78 -10.99 -0.09 7.51 16 10 O -0.53 -10.01 15.91 -14.36 -0.23 -10.24 16 11 N -0.60 -8.39 2.98 -172.52 -0.51 -8.91 16 12 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 13 C -0.13 -2.14 5.36 -26.61 -0.14 -2.28 16 14 C -0.08 -1.49 2.10 -90.58 -0.19 -1.68 16 15 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 16 C -0.52 -13.69 8.39 -34.44 -0.29 -13.98 16 17 H 0.06 1.39 7.06 -52.49 -0.37 1.02 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.12 -1.92 5.19 -26.59 -0.14 -2.06 16 25 C 0.10 1.23 6.35 -3.53 -0.02 1.20 16 26 S 0.19 1.48 23.04 -107.50 -2.48 -1.00 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.77 7.70 -51.93 -0.40 0.37 16 33 H 0.08 0.60 7.95 -51.93 -0.41 0.19 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 44 H 0.07 0.67 5.97 -51.93 -0.31 0.36 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -35.89 383.98 -8.87 -44.77 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -6.85 Total: -4.04 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.52 Total: -6.02 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.98 Total: -40.09 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.77 Total: -15.24 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.48 Total: -1.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.89 -8.87 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566917388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.674 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds