Wall clock time and date at job start Sat Apr 11 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29408 * 125.69756 * 2 1 4 4 N 1.26397 * 116.47749 * 179.74172 * 3 2 1 5 5 C 1.29417 * 116.47353 * 0.54244 * 4 3 2 6 6 C 1.50698 * 125.69944 * 179.76423 * 5 4 3 7 7 O 1.42903 * 109.46975 * 89.68677 * 6 5 4 8 8 C 1.42905 * 113.99721 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.46808 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00306 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00030 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.63336 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 233.68039 * 12 11 9 14 14 C 1.53035 * 109.31327 * 305.29292 * 13 12 11 15 15 C 1.53007 * 109.46118 * 181.38770 * 14 13 12 16 16 C 1.50699 * 109.47144 * 174.99788 * 15 14 13 17 17 H 1.07998 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99734 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99971 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47041 * 59.99764 * 20 18 16 22 22 H 1.48490 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46976 * 300.00213 * 20 18 16 24 24 C 1.53038 * 109.54175 * 61.36680 * 14 13 12 25 25 C 1.47207 * 120.81118 * 0.14238 * 11 9 8 26 26 S 1.71220 * 125.69341 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47309 * 269.95602 * 1 2 3 28 28 H 1.08999 * 109.46734 * 29.96421 * 1 2 3 29 29 H 1.08999 * 109.47036 * 149.95653 * 1 2 3 30 30 H 1.09011 * 109.46857 * 329.69451 * 6 5 4 31 31 H 1.09000 * 109.47560 * 209.69123 * 6 5 4 32 32 H 1.08992 * 109.47241 * 60.00227 * 8 7 6 33 33 H 1.09000 * 109.47072 * 299.99682 * 8 7 6 34 34 H 1.09002 * 109.58861 * 113.82042 * 12 11 9 35 35 H 1.08996 * 109.58519 * 353.53933 * 12 11 9 36 36 H 1.09003 * 109.49975 * 65.24379 * 13 12 11 37 37 H 1.09000 * 109.49553 * 185.30642 * 13 12 11 38 38 H 1.09005 * 109.46002 * 301.35718 * 14 13 12 39 39 H 1.08996 * 109.46924 * 295.00300 * 15 14 13 40 40 H 1.09004 * 109.46756 * 54.99920 * 15 14 13 41 41 H 0.97006 * 119.99658 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.49557 * 58.58503 * 24 14 13 43 43 H 1.08996 * 109.50003 * 178.68400 * 24 14 13 44 44 H 1.08996 * 109.53610 * 6.53286 * 25 11 9 45 45 H 1.09002 * 109.68003 * 246.22753 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8484 0.0051 5 6 3.8937 -0.3875 -0.0012 6 6 5.3232 -0.8643 -0.0020 7 8 5.7757 -1.0154 1.3450 8 6 7.1274 -1.4656 1.4570 9 6 7.4964 -1.5896 2.9128 10 8 6.6823 -1.3187 3.7701 11 7 8.7312 -2.0016 3.2623 12 6 9.1057 -2.1280 4.6774 13 6 10.3859 -1.3240 4.9254 14 6 11.4698 -1.7841 3.9479 15 6 12.7606 -1.0074 4.2156 16 6 13.8614 -1.5446 3.3377 17 1 13.6606 -2.3588 2.6572 18 6 15.1251 -0.9972 3.4040 19 7 15.3700 -0.0067 4.2338 20 14 16.4895 -1.6627 2.3154 21 1 16.1053 -1.5068 0.8894 22 1 17.7422 -0.9089 2.5752 23 1 16.7052 -3.1009 2.6155 24 6 11.0076 -1.5253 2.5121 25 6 9.7342 -2.3321 2.2367 26 16 2.5060 -1.3906 -0.0006 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 5.9493 -0.1346 -0.5159 31 1 5.3862 -1.8233 -0.5163 32 1 7.7905 -0.7483 0.9736 33 1 7.2281 -2.4370 0.9730 34 1 9.2807 -3.1769 4.9168 35 1 8.3029 -1.7393 5.3039 36 1 10.1849 -0.2636 4.7729 37 1 10.7251 -1.4866 5.9484 38 1 11.6526 -2.8501 4.0838 39 1 12.6019 0.0481 3.9946 40 1 13.0425 -1.1210 5.2624 41 1 16.2590 0.3786 4.2801 42 1 10.8007 -0.4630 2.3824 43 1 11.7895 -1.8316 1.8174 44 1 9.3455 -2.0765 1.2511 45 1 9.9609 -3.3976 2.2750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566917388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:28 Heat of formation + Delta-G solvation = -50.269683 kcal Electronic energy + Delta-G solvation = -26167.776229 eV Core-core repulsion = 22311.439458 eV Total energy + Delta-G solvation = -3856.336772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41372 -41.27642 -39.24148 -38.32865 -35.69472 -34.45124 -34.02752 -32.33715 -31.44952 -30.06763 -28.86770 -27.44626 -26.10407 -25.28194 -24.12095 -23.41090 -21.38885 -21.05561 -20.44305 -19.97043 -18.54531 -18.36102 -17.81904 -17.32726 -17.06229 -16.59303 -16.48021 -16.28989 -15.86987 -15.30192 -15.13439 -14.88378 -14.60954 -14.40383 -14.34593 -14.15595 -13.99683 -13.89469 -13.45445 -13.41824 -13.19087 -12.97371 -12.92869 -12.73209 -12.47152 -12.31842 -12.11119 -11.76181 -11.56183 -11.35057 -11.34480 -11.13491 -10.93162 -10.85139 -10.83546 -10.70612 -10.66058 -10.49347 -9.64116 -8.14036 -6.23978 -0.71788 -0.14630 0.25940 1.30588 1.43919 1.46204 1.52330 1.53656 1.77754 2.44830 2.63139 3.09812 3.19871 3.44928 3.62363 3.79651 3.91335 4.04363 4.07526 4.12565 4.17542 4.21712 4.23872 4.33185 4.41790 4.42966 4.56793 4.59671 4.69728 4.71265 4.82433 4.90076 4.96363 5.05108 5.10996 5.30823 5.34369 5.42107 5.54595 5.59554 5.81795 5.86557 5.91500 6.30022 6.39803 6.93270 7.10952 7.44181 7.45075 8.97693 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.001811 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.173450 B =15460.424662 C =15918.422846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.023 4.023 3 N -0.308 5.308 4 N -0.282 5.282 5 C -0.046 4.046 6 C 0.139 3.861 7 O -0.392 6.392 8 C 0.048 3.952 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.604 5.604 12 C 0.120 3.880 13 C -0.123 4.123 14 C -0.073 4.073 15 C 0.030 3.970 16 C -0.525 4.525 17 H 0.072 0.928 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.962 3.038 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.266 1.266 24 C -0.117 4.117 25 C 0.109 3.891 26 S 0.257 5.743 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.067 0.933 39 H -0.018 1.018 40 H -0.017 1.017 41 H 0.260 0.740 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.394 -10.076 -14.081 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.301 4.301 3 N -0.147 5.147 4 N -0.121 5.121 5 C -0.325 4.325 6 C 0.059 3.941 7 O -0.311 6.311 8 C -0.031 4.031 9 C 0.297 3.703 10 O -0.461 6.461 11 N -0.338 5.338 12 C -0.003 4.003 13 C -0.161 4.161 14 C -0.092 4.092 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.090 0.910 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.219 1.219 23 H -0.191 1.191 24 C -0.155 4.155 25 C -0.012 4.012 26 S 0.501 5.499 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.134 0.866 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.749 -9.450 -13.422 32.240 hybrid contribution 1.545 0.752 0.125 1.722 sum -26.204 -8.698 -13.298 30.646 Atomic orbital electron populations 1.20683 0.80927 1.06412 1.05768 1.30057 1.06341 0.92069 1.01590 1.71445 0.97047 1.28767 1.17467 1.71375 1.07449 1.19097 1.14213 1.29112 1.04235 0.93009 1.06131 1.20989 0.85639 1.03127 0.84341 1.88002 1.28311 1.88638 1.26114 1.22468 0.84026 1.03812 0.92763 1.20857 0.81476 0.76125 0.91800 1.90691 1.50701 1.51206 1.53533 1.48268 1.11748 1.65644 1.08157 1.21537 0.96192 1.00875 0.81661 1.21916 0.94997 0.99061 1.00126 1.21046 0.93642 0.99627 0.94883 1.19040 0.92807 0.94071 0.94753 1.21652 0.94950 1.17648 1.22081 0.91021 1.26006 1.01769 0.95367 0.97128 1.70122 1.22253 1.26586 1.39021 0.85545 0.77772 0.78515 0.79478 1.18771 1.21864 1.19108 1.21827 0.97095 0.99536 0.97058 1.22151 0.87143 1.00755 0.91171 1.83319 0.94835 1.09180 1.62533 0.87710 0.88375 0.86611 0.88482 0.86067 0.87387 0.85279 0.89494 0.90763 0.93977 0.91213 0.91461 0.99949 0.99845 0.93177 0.93700 0.90017 0.86611 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.49 71.24 0.75 0.22 16 2 C -0.02 -0.37 7.53 88.47 0.67 0.29 16 3 N -0.31 -7.85 11.66 -50.85 -0.59 -8.44 16 4 N -0.28 -7.72 11.66 -50.85 -0.59 -8.31 16 5 C -0.05 -0.93 7.16 88.46 0.63 -0.30 16 6 C 0.14 2.11 6.53 71.24 0.47 2.57 16 7 O -0.39 -9.03 9.86 -129.94 -1.28 -10.31 16 8 C 0.05 0.84 4.77 71.23 0.34 1.18 16 9 C 0.51 14.03 7.78 87.66 0.68 14.71 16 10 O -0.58 -22.00 15.91 15.99 0.25 -21.74 16 11 N -0.60 -15.39 2.98 -818.10 -2.44 -17.83 16 12 C 0.12 3.38 6.42 86.36 0.55 3.93 16 13 C -0.12 -4.10 5.36 30.67 0.16 -3.94 16 14 C -0.07 -2.70 2.10 -10.77 -0.02 -2.72 16 15 C 0.03 1.53 4.45 29.85 0.13 1.66 16 16 C -0.53 -27.85 8.39 25.60 0.21 -27.63 16 17 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 18 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 19 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16 20 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 C -0.12 -3.55 5.19 30.69 0.16 -3.39 16 25 C 0.11 2.20 6.35 86.32 0.55 2.75 16 26 S 0.26 3.40 23.04 -56.49 -1.30 2.10 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.12 0.09 8.14 -2.39 -0.02 0.08 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.47 7.70 -2.39 -0.02 1.45 16 33 H 0.13 1.09 7.95 -2.39 -0.02 1.08 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 2.58 6.91 -2.39 -0.02 2.56 16 44 H 0.12 1.44 5.97 -2.39 -0.01 1.42 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -84.20 383.98 3.10 -81.10 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.99 Total: 5.79 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.75 Total: -10.51 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.34 Total: -91.01 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.03 Total: -32.05 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.30 Total: 2.10 kcal Total: -84.20 3.10 -81.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566917388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.833 kcal (2) G-P(sol) polarization free energy of solvation -84.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds