Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47094 * 2 1 4 4 N 1.29035 * 124.91058 * 90.32871 * 3 2 1 5 5 C 1.31785 * 117.11779 * 180.23032 * 4 3 2 6 6 C 1.50703 * 122.74651 * 179.75367 * 5 4 3 7 7 H 1.09002 * 109.47152 * 214.70784 * 6 5 4 8 8 C 1.53002 * 109.46966 * 94.70924 * 6 5 4 9 9 N 1.46505 * 109.47064 * 334.70701 * 6 5 4 10 10 C 1.34769 * 119.99686 * 204.99925 * 9 6 5 11 11 O 1.21585 * 120.00410 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99518 * 180.02562 * 10 9 6 13 13 C 1.47423 * 125.65013 * 359.69346 * 12 10 9 14 14 C 1.55130 * 104.72283 * 155.81424 * 13 12 10 15 15 C 1.55157 * 101.48440 * 37.29625 * 14 13 12 16 16 O 1.42907 * 110.72069 * 82.69703 * 15 14 13 17 17 C 1.50705 * 110.87455 * 205.89606 * 15 14 13 18 18 H 1.07996 * 119.99722 * 355.06582 * 17 15 14 19 19 C 1.37876 * 119.99977 * 175.06357 * 17 15 14 20 20 N 1.31513 * 120.00250 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99793 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46745 * 120.00116 * 21 19 17 24 24 H 1.48496 * 109.47368 * 240.00300 * 21 19 17 25 25 C 1.47027 * 125.64837 * 179.97438 * 12 10 9 26 26 C 1.33639 * 114.50134 * 359.48243 * 5 4 3 27 27 S 1.70971 * 124.92075 * 270.02821 * 3 2 1 28 28 H 1.09001 * 109.47100 * 299.99775 * 1 2 3 29 29 H 1.09001 * 109.47461 * 60.00024 * 1 2 3 30 30 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47017 * 240.00746 * 2 1 3 32 32 H 1.09001 * 109.47461 * 119.99976 * 2 1 3 33 33 H 1.09000 * 109.46986 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47075 * 299.99352 * 8 6 5 35 35 H 1.08996 * 109.47407 * 60.00310 * 8 6 5 36 36 H 0.97000 * 119.99634 * 25.00257 * 9 6 5 37 37 H 1.08992 * 110.36917 * 274.74601 * 13 12 10 38 38 H 1.09000 * 110.36317 * 37.07224 * 13 12 10 39 39 H 1.08999 * 111.19807 * 279.19573 * 14 13 12 40 40 H 1.09003 * 110.90415 * 155.27250 * 14 13 12 41 41 H 0.96701 * 114.00083 * 185.02523 * 16 15 14 42 42 H 0.97006 * 119.99995 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.88297 * 300.44087 * 25 12 10 44 44 H 1.09002 * 109.87895 * 61.44840 * 25 12 10 45 45 H 1.07998 * 126.03210 * 180.26802 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1151 1.0581 5 6 2.7140 3.3480 0.8795 6 6 3.0410 4.2713 2.0248 7 1 2.7771 5.2936 1.7540 8 6 4.5383 4.1948 2.3299 9 7 2.2798 3.8680 3.2098 10 6 1.9988 4.7712 4.1697 11 8 2.3765 5.9209 4.0521 12 7 1.2989 4.4000 5.2601 13 6 0.7767 3.0474 5.5266 14 6 0.6341 2.9767 7.0697 15 6 0.1579 4.4155 7.4021 16 8 -1.2530 4.5379 7.2112 17 6 0.5383 4.7951 8.8101 18 1 1.0004 4.0665 9.4597 19 6 0.2964 6.0726 9.2689 20 7 -0.2668 6.9597 8.4781 21 14 0.7672 6.5429 11.0144 22 1 1.3799 5.3733 11.6940 23 1 1.7431 7.6617 10.9794 24 1 -0.4465 6.9676 11.7571 25 6 0.9249 5.2785 6.3782 26 6 2.8415 3.7104 -0.4005 27 16 2.3579 2.3438 -1.4019 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.7747 4.8623 3.1586 34 1 4.8022 3.1725 2.6008 35 1 5.1046 4.4950 1.4483 36 1 1.9782 2.9508 3.3035 37 1 -0.1930 2.9139 5.0472 38 1 1.4812 2.2930 5.1762 39 1 1.5916 2.7626 7.5446 40 1 -0.1164 2.2405 7.3576 41 1 -1.5897 5.4364 7.3312 42 1 -0.4373 7.8584 8.8010 43 1 1.8211 5.6929 6.8399 44 1 0.2866 6.0853 6.0182 45 1 3.1810 4.6714 -0.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591954841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -37.053295 kcal Electronic energy + Delta-G solvation = -27569.099816 eV Core-core repulsion = 23713.336150 eV Total energy + Delta-G solvation = -3855.763666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50339 -39.40729 -37.43693 -35.40174 -34.19821 -33.80567 -32.18427 -31.13772 -29.75145 -28.80360 -27.64592 -26.00916 -25.06539 -23.96857 -22.54972 -21.52451 -19.97564 -19.63890 -19.31631 -18.12733 -17.34411 -17.00724 -15.68296 -15.65994 -15.36408 -15.17618 -14.80816 -14.78632 -14.39970 -14.14960 -13.66073 -13.59699 -13.35078 -12.96045 -12.85491 -12.83327 -12.45172 -12.28893 -12.03292 -12.02695 -11.73981 -11.62237 -11.48977 -11.36491 -11.18934 -11.02403 -10.75130 -10.61123 -10.43453 -10.12758 -9.89739 -9.66101 -9.55047 -9.27075 -9.05426 -8.73507 -8.64529 -8.26738 -7.69330 -6.24196 -4.32498 0.44575 1.08907 1.44501 2.51327 3.18453 3.24410 3.31916 3.35453 3.69811 3.81186 4.30120 4.45284 4.56288 4.72417 4.85618 4.90424 5.03749 5.13174 5.23070 5.26701 5.35497 5.45575 5.46835 5.58982 5.60738 5.76721 5.81290 5.83224 5.90068 5.94120 6.09123 6.17397 6.24677 6.56640 6.77842 6.81733 6.94765 7.05964 7.32407 7.38350 7.51428 7.74648 7.77432 8.08811 8.60678 8.72049 9.19703 9.33894 9.42462 10.83609 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.002630 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.571685 B =10642.169232 C =11454.468899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.056 3.944 4 N -0.465 5.465 5 C 0.070 3.930 6 C 0.239 3.761 7 H 0.102 0.898 8 C -0.157 4.157 9 N -0.740 5.740 10 C 0.717 3.283 11 O -0.600 6.600 12 N -0.629 5.629 13 C 0.104 3.896 14 C -0.115 4.115 15 C 0.247 3.753 16 O -0.585 6.585 17 C -0.536 4.536 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.124 3.876 26 C -0.253 4.253 27 S 0.116 5.884 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.382 0.618 42 H 0.269 0.731 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -12.535 -20.029 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.223 4.223 4 N -0.179 5.179 5 C -0.062 4.062 6 C 0.130 3.870 7 H 0.120 0.880 8 C -0.216 4.216 9 N -0.398 5.398 10 C 0.418 3.582 11 O -0.479 6.479 12 N -0.366 5.366 13 C -0.019 4.019 14 C -0.153 4.153 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.574 4.574 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.002 3.998 26 C -0.392 4.392 27 S 0.371 5.629 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.106 -12.532 -20.854 24.860 hybrid contribution 0.311 1.211 1.635 2.058 sum 5.417 -11.322 -19.220 22.955 Atomic orbital electron populations 1.21779 0.93270 1.02702 1.02907 1.20244 0.96904 0.87355 1.04315 1.27093 1.02527 1.01820 0.90822 1.65931 1.14695 1.05567 1.31747 1.20405 1.00183 0.91373 0.94255 1.19144 0.91592 0.95742 0.80500 0.88019 1.22191 0.94158 1.02735 1.02517 1.45050 1.60732 1.13349 1.20651 1.15492 0.78978 0.84276 0.79406 1.90870 1.59523 1.18120 1.79400 1.47937 1.55800 1.12465 1.20400 1.22264 0.97695 0.83926 0.98036 1.22755 1.01192 0.99012 0.92363 1.19520 0.79100 0.88846 0.91843 1.86106 1.23802 1.35639 1.93826 1.21526 1.41272 0.97135 0.97460 0.91531 1.25077 0.93931 0.96129 0.98195 1.69714 1.42449 1.05036 1.35988 0.86359 0.78264 0.78528 0.83804 1.19619 1.20802 1.20783 1.22843 0.99731 0.92928 0.84314 1.26709 1.12417 1.04588 0.95481 1.83903 1.60431 1.05711 1.12831 0.91634 0.92449 0.91273 0.89704 0.88578 0.90809 0.92343 0.91866 0.76173 0.92117 0.92574 0.90499 0.90682 0.76809 0.92102 0.91802 0.91950 0.80284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.05 -0.32 6.52 -27.88 -0.18 -0.51 16 3 C 0.06 0.54 6.64 -13.45 -0.09 0.45 16 4 N -0.46 -5.67 9.52 -8.05 -0.08 -5.75 16 5 C 0.07 0.86 5.80 -84.22 -0.49 0.37 16 6 C 0.24 3.38 2.91 -69.08 -0.20 3.18 16 7 H 0.10 1.53 7.57 -51.93 -0.39 1.14 16 8 C -0.16 -1.99 9.47 37.16 0.35 -1.64 16 9 N -0.74 -12.31 5.02 -59.81 -0.30 -12.61 16 10 C 0.72 15.11 8.45 -86.92 -0.73 14.38 16 11 O -0.60 -14.62 16.33 5.29 0.09 -14.54 16 12 N -0.63 -13.58 3.33 -176.10 -0.59 -14.16 16 13 C 0.10 1.92 6.58 -2.41 -0.02 1.91 16 14 C -0.12 -2.35 6.24 -24.46 -0.15 -2.50 16 15 C 0.25 6.08 0.85 -89.94 -0.08 6.00 16 16 O -0.59 -14.90 13.07 -35.23 -0.46 -15.36 16 17 C -0.54 -14.17 8.13 -34.44 -0.28 -14.45 16 18 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 20 N -0.89 -24.13 10.96 55.43 0.61 -23.52 16 21 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.12 3.09 5.23 -3.07 -0.02 3.08 16 26 C -0.25 -2.50 11.14 29.12 0.32 -2.18 16 27 S 0.12 0.96 23.18 -107.50 -2.49 -1.53 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.40 6.27 6.29 -40.82 -0.26 6.02 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.87 7.29 -51.93 -0.38 0.49 16 39 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.38 9.95 7.45 45.56 0.34 10.29 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.74 7.82 -51.93 -0.41 1.33 16 44 H 0.06 1.70 7.92 -51.93 -0.41 1.29 16 45 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -31.11 383.37 -9.87 -40.98 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -6.12 Total: 15.79 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -1.29 Total: 9.23 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.36 Total: -56.05 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.37 Total: -29.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.11 -9.87 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591954841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.928 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds