Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47094 * 2 1 4 4 N 1.29035 * 124.91058 * 90.32871 * 3 2 1 5 5 C 1.31785 * 117.11779 * 180.23032 * 4 3 2 6 6 C 1.50703 * 122.74651 * 179.75367 * 5 4 3 7 7 H 1.09002 * 109.47152 * 214.70784 * 6 5 4 8 8 C 1.53002 * 109.46966 * 94.70924 * 6 5 4 9 9 N 1.46505 * 109.47064 * 334.70701 * 6 5 4 10 10 C 1.34769 * 119.99686 * 204.99925 * 9 6 5 11 11 O 1.21585 * 120.00410 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99518 * 180.02562 * 10 9 6 13 13 C 1.47423 * 125.65013 * 359.69346 * 12 10 9 14 14 C 1.55130 * 104.72283 * 155.81424 * 13 12 10 15 15 C 1.55157 * 101.48440 * 37.29625 * 14 13 12 16 16 O 1.42907 * 110.72069 * 82.69703 * 15 14 13 17 17 C 1.50705 * 110.87455 * 205.89606 * 15 14 13 18 18 H 1.07996 * 119.99722 * 355.06582 * 17 15 14 19 19 C 1.37876 * 119.99977 * 175.06357 * 17 15 14 20 20 N 1.31513 * 120.00250 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99793 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46745 * 120.00116 * 21 19 17 24 24 H 1.48496 * 109.47368 * 240.00300 * 21 19 17 25 25 C 1.47027 * 125.64837 * 179.97438 * 12 10 9 26 26 C 1.33639 * 114.50134 * 359.48243 * 5 4 3 27 27 S 1.70971 * 124.92075 * 270.02821 * 3 2 1 28 28 H 1.09001 * 109.47100 * 299.99775 * 1 2 3 29 29 H 1.09001 * 109.47461 * 60.00024 * 1 2 3 30 30 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47017 * 240.00746 * 2 1 3 32 32 H 1.09001 * 109.47461 * 119.99976 * 2 1 3 33 33 H 1.09000 * 109.46986 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47075 * 299.99352 * 8 6 5 35 35 H 1.08996 * 109.47407 * 60.00310 * 8 6 5 36 36 H 0.97000 * 119.99634 * 25.00257 * 9 6 5 37 37 H 1.08992 * 110.36917 * 274.74601 * 13 12 10 38 38 H 1.09000 * 110.36317 * 37.07224 * 13 12 10 39 39 H 1.08999 * 111.19807 * 279.19573 * 14 13 12 40 40 H 1.09003 * 110.90415 * 155.27250 * 14 13 12 41 41 H 0.96701 * 114.00083 * 185.02523 * 16 15 14 42 42 H 0.97006 * 119.99995 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.88297 * 300.44087 * 25 12 10 44 44 H 1.09002 * 109.87895 * 61.44840 * 25 12 10 45 45 H 1.07998 * 126.03210 * 180.26802 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1151 1.0581 5 6 2.7140 3.3480 0.8795 6 6 3.0410 4.2713 2.0248 7 1 2.7771 5.2936 1.7540 8 6 4.5383 4.1948 2.3299 9 7 2.2798 3.8680 3.2098 10 6 1.9988 4.7712 4.1697 11 8 2.3765 5.9209 4.0521 12 7 1.2989 4.4000 5.2601 13 6 0.7767 3.0474 5.5266 14 6 0.6341 2.9767 7.0697 15 6 0.1579 4.4155 7.4021 16 8 -1.2530 4.5379 7.2112 17 6 0.5383 4.7951 8.8101 18 1 1.0004 4.0665 9.4597 19 6 0.2964 6.0726 9.2689 20 7 -0.2668 6.9597 8.4781 21 14 0.7672 6.5429 11.0144 22 1 1.3799 5.3733 11.6940 23 1 1.7431 7.6617 10.9794 24 1 -0.4465 6.9676 11.7571 25 6 0.9249 5.2785 6.3782 26 6 2.8415 3.7104 -0.4005 27 16 2.3579 2.3438 -1.4019 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.7747 4.8623 3.1586 34 1 4.8022 3.1725 2.6008 35 1 5.1046 4.4950 1.4483 36 1 1.9782 2.9508 3.3035 37 1 -0.1930 2.9139 5.0472 38 1 1.4812 2.2930 5.1762 39 1 1.5916 2.7626 7.5446 40 1 -0.1164 2.2405 7.3576 41 1 -1.5897 5.4364 7.3312 42 1 -0.4373 7.8584 8.8010 43 1 1.8211 5.6929 6.8399 44 1 0.2866 6.0853 6.0182 45 1 3.1810 4.6714 -0.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591954841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -59.149326 kcal Electronic energy + Delta-G solvation = -27570.057972 eV Core-core repulsion = 23713.336150 eV Total energy + Delta-G solvation = -3856.721822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61659 -40.81099 -39.17536 -36.57932 -36.07113 -34.63923 -34.22945 -32.46078 -31.23522 -29.83226 -29.43568 -27.10913 -26.56321 -25.06099 -24.06367 -22.40639 -21.46122 -21.01833 -20.67094 -19.41415 -18.99479 -18.56953 -17.33163 -16.89105 -16.66868 -16.54072 -16.11746 -16.04670 -15.60979 -15.31996 -15.00534 -14.79325 -14.70641 -14.57020 -14.32938 -13.96928 -13.76654 -13.50941 -13.36522 -13.24256 -13.02456 -12.86899 -12.73871 -12.55334 -12.51745 -12.34770 -12.24910 -12.21916 -12.09590 -11.95725 -11.32254 -11.17771 -10.66118 -10.64442 -10.38889 -10.32413 -10.29201 -9.69943 -9.42348 -8.25862 -6.41717 -0.28619 0.39836 0.69911 1.40161 1.43332 1.54282 1.57773 1.78113 2.12070 2.38215 2.90711 3.00753 3.10767 3.68962 3.78633 4.02744 4.07104 4.15033 4.20012 4.23749 4.30926 4.35400 4.35847 4.47932 4.55080 4.61335 4.71295 4.72388 4.81902 5.01218 5.03104 5.04168 5.11044 5.11469 5.20148 5.23691 5.34534 5.36282 5.47850 5.49952 5.74511 6.03040 6.16995 6.65213 6.73911 7.03253 7.27447 7.35078 7.53936 8.80551 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.002630 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.571685 B =10642.169232 C =11454.468899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.043 3.957 4 N -0.495 5.495 5 C 0.048 3.952 6 C 0.236 3.764 7 H 0.087 0.913 8 C -0.148 4.148 9 N -0.721 5.721 10 C 0.712 3.288 11 O -0.640 6.640 12 N -0.635 5.635 13 C 0.110 3.890 14 C -0.108 4.108 15 C 0.234 3.766 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.068 0.932 19 C 0.024 3.976 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.277 1.277 25 C 0.143 3.857 26 C -0.256 4.256 27 S 0.175 5.825 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.375 0.625 42 H 0.269 0.731 43 H 0.030 0.970 44 H 0.027 0.973 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 -14.900 -21.622 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.235 4.235 4 N -0.210 5.210 5 C -0.084 4.084 6 C 0.128 3.872 7 H 0.105 0.895 8 C -0.206 4.206 9 N -0.378 5.378 10 C 0.414 3.586 11 O -0.522 6.522 12 N -0.372 5.372 13 C -0.012 4.012 14 C -0.146 4.146 15 C 0.193 3.807 16 O -0.395 6.395 17 C -0.593 4.593 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.203 1.203 25 C 0.020 3.980 26 C -0.396 4.396 27 S 0.431 5.569 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.224 0.776 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.643 -14.968 -22.490 27.598 hybrid contribution 0.139 1.924 1.989 2.771 sum 5.782 -13.044 -20.501 24.977 Atomic orbital electron populations 1.21765 0.93162 1.03586 1.01907 1.20396 0.96865 0.85976 1.05574 1.27589 1.01880 1.02855 0.91128 1.65884 1.16008 1.05771 1.33332 1.20085 1.02538 0.91652 0.94113 1.19245 0.91988 0.95762 0.80250 0.89533 1.22096 0.93561 1.02257 1.02735 1.44943 1.59955 1.12771 1.20164 1.15678 0.78699 0.84336 0.79855 1.90833 1.61017 1.20083 1.80289 1.47892 1.56166 1.13213 1.19934 1.22377 0.98950 0.82977 0.96895 1.22748 1.01777 0.96457 0.93642 1.19716 0.78458 0.91458 0.91025 1.86097 1.24463 1.35084 1.93816 1.21839 1.41522 0.97491 0.98481 0.91419 1.25837 0.93894 0.96162 1.01767 1.69823 1.43024 1.05197 1.37425 0.85404 0.77917 0.78138 0.79555 1.18817 1.21036 1.20258 1.22347 0.97521 0.92774 0.85394 1.27023 1.11143 1.06112 0.95320 1.83707 1.58772 1.03643 1.10826 0.93837 0.92190 0.89490 0.87134 0.88643 0.93414 0.92013 0.89153 0.75288 0.91525 0.88856 0.89748 0.89078 0.77602 0.92125 0.95115 0.95416 0.78525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 71.98 0.71 -0.90 16 2 C -0.05 -0.52 6.52 29.85 0.19 -0.33 16 3 C 0.04 0.74 6.64 88.52 0.59 1.33 16 4 N -0.49 -11.29 9.52 -179.39 -1.71 -13.00 16 5 C 0.05 1.12 5.80 41.52 0.24 1.36 16 6 C 0.24 6.61 2.91 44.25 0.13 6.74 16 7 H 0.09 2.67 7.57 -2.39 -0.02 2.66 16 8 C -0.15 -3.68 9.47 71.98 0.68 -3.00 16 9 N -0.72 -23.91 5.02 -461.40 -2.32 -26.23 16 10 C 0.71 30.73 8.45 179.06 1.51 32.24 16 11 O -0.64 -32.55 16.33 -3.99 -0.07 -32.62 16 12 N -0.64 -27.84 3.33 -829.33 -2.76 -30.60 16 13 C 0.11 3.92 6.58 86.93 0.57 4.49 16 14 C -0.11 -4.29 6.24 32.06 0.20 -4.09 16 15 C 0.23 11.65 0.85 -10.35 -0.01 11.64 16 16 O -0.59 -30.38 13.07 -148.98 -1.95 -32.32 16 17 C -0.56 -29.71 8.13 25.60 0.21 -29.50 16 18 H 0.07 3.52 7.78 -2.91 -0.02 3.50 16 19 C 0.02 1.30 5.28 84.65 0.45 1.74 16 20 N -0.92 -50.96 10.96 21.45 0.24 -50.73 16 21 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.14 7.46 5.23 86.73 0.45 7.92 16 26 C -0.26 -4.55 11.14 66.78 0.74 -3.80 16 27 S 0.17 2.37 23.18 -56.49 -1.31 1.06 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 12.36 6.29 -92.71 -0.58 11.77 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.09 2.65 7.29 -2.39 -0.02 2.63 16 39 H 0.08 3.20 8.04 -2.39 -0.02 3.18 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.37 20.25 7.45 -74.06 -0.55 19.70 16 42 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 43 H 0.03 1.76 7.82 -2.39 -0.02 1.74 16 44 H 0.03 1.60 7.92 -2.39 -0.02 1.58 16 45 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -69.65 383.37 -1.29 -70.94 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.12 Total: 42.77 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 6.68 Total: 25.84 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -6.55 Total: -120.55 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -2.01 Total: -64.94 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.31 Total: 1.06 kcal Total: -69.65 -1.29 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591954841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.788 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds