Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33641 * 122.74680 * 2 1 4 4 S 1.76196 * 107.92295 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28288 * 0.02562 * 4 3 2 6 6 C 1.50693 * 124.91487 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46812 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47155 * 300.01890 * 6 5 4 9 9 C 1.52995 * 109.47488 * 60.02089 * 6 5 4 10 10 N 1.46497 * 109.47245 * 174.99964 * 9 6 5 11 11 C 1.34785 * 120.00212 * 179.97438 * 10 9 6 12 12 O 1.21583 * 119.99543 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99769 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65218 * 0.02641 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.83904 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47319 * 125.61066 * 180.16584 * 13 11 10 27 27 N 1.29027 * 110.16516 * 0.23589 * 5 4 3 28 28 H 1.09000 * 109.47312 * 90.02307 * 1 2 3 29 29 H 1.09001 * 109.46792 * 210.02428 * 1 2 3 30 30 H 1.09002 * 109.47063 * 330.01701 * 1 2 3 31 31 H 1.07997 * 126.03702 * 0.04622 * 3 2 1 32 32 H 1.08993 * 109.47226 * 60.00232 * 8 6 5 33 33 H 1.09003 * 109.47373 * 180.02562 * 8 6 5 34 34 H 1.09004 * 109.47098 * 299.99986 * 8 6 5 35 35 H 1.08993 * 109.47294 * 55.00037 * 9 6 5 36 36 H 1.09003 * 109.47130 * 294.99662 * 9 6 5 37 37 H 0.97000 * 120.00134 * 359.97438 * 10 9 6 38 38 H 1.08994 * 110.36742 * 36.99340 * 14 13 11 39 39 H 1.09008 * 110.36374 * 274.67201 * 14 13 11 40 40 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 41 41 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 42 42 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06766 * 61.74679 * 26 13 11 45 45 H 1.08999 * 109.85130 * 300.49036 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 1 3.9387 -3.0711 -0.0042 8 6 5.3626 -2.0444 -1.2529 9 6 5.3637 -2.0470 1.2456 10 7 6.2342 -3.2238 1.3056 11 6 7.1020 -3.3687 2.3267 12 8 7.1620 -2.5230 3.1981 13 7 7.9032 -4.4511 2.3816 14 6 7.9349 -5.5475 1.3967 15 6 9.3494 -6.1637 1.5346 16 6 9.5863 -6.0608 3.0645 17 8 8.9785 -7.1604 3.7453 18 6 11.0600 -5.9943 3.3725 19 1 11.7825 -6.0608 2.5726 20 6 11.4858 -5.8427 4.6752 21 7 10.6060 -5.7617 5.6493 22 14 13.3123 -5.7526 5.0562 23 1 14.0874 -5.8669 3.7947 24 1 13.6184 -4.4542 5.7088 25 1 13.6833 -6.8645 5.9680 26 6 8.8901 -4.7351 3.4379 27 7 2.2199 -1.1083 -0.0065 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 1.8391 2.1308 0.0007 32 1 5.9074 -1.1004 -1.2522 33 1 6.0709 -2.8730 -1.2543 34 1 4.7356 -2.1014 -2.1427 35 1 4.7325 -2.0164 2.1336 36 1 5.9744 -1.1452 1.2026 37 1 6.1861 -3.8987 0.6106 38 1 7.7875 -5.1573 0.3898 39 1 7.1729 -6.2907 1.6318 40 1 10.0861 -5.5777 0.9849 41 1 9.3564 -7.2034 1.2072 42 1 9.0655 -7.1237 4.7077 43 1 10.9056 -5.6554 6.5658 44 1 8.3888 -4.8379 4.4003 45 1 9.6244 -3.9310 3.4842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592010108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -38.663928 kcal Electronic energy + Delta-G solvation = -26948.994546 eV Core-core repulsion = 23093.161038 eV Total energy + Delta-G solvation = -3855.833508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27031 -39.67038 -37.63993 -36.30090 -34.26619 -33.14290 -32.18885 -31.27185 -29.92613 -27.94066 -27.87125 -26.78117 -25.30124 -24.29815 -22.55984 -21.19817 -20.12199 -19.65292 -19.48976 -17.91274 -17.45715 -17.05525 -16.22680 -15.61482 -15.55641 -15.17092 -14.92046 -14.60370 -14.43915 -14.05589 -13.92693 -13.53006 -13.27493 -13.12025 -12.94207 -12.86217 -12.82932 -12.67849 -12.21743 -12.09186 -11.71107 -11.64921 -11.55278 -11.42844 -11.25733 -11.05997 -10.81150 -10.65653 -10.46841 -10.16386 -9.92514 -9.67380 -9.64523 -9.32772 -8.98013 -8.89658 -8.67208 -8.30750 -7.77557 -6.28071 -4.36409 0.40934 1.08941 1.49340 2.46521 3.00239 3.21159 3.29820 3.33014 3.71731 3.72494 4.26915 4.36397 4.49548 4.61506 4.66632 4.82188 4.92622 4.99819 5.06927 5.24657 5.34264 5.36408 5.40518 5.43750 5.53689 5.65224 5.68768 5.75289 5.82787 5.86848 5.94012 6.01452 6.09796 6.50823 6.66124 6.71897 6.88570 6.97185 7.25271 7.32261 7.46914 7.60681 7.74354 8.03227 8.50296 8.67414 9.09778 9.31375 9.41078 10.79810 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002146 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.322284 B =13043.665571 C =13293.734196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 C -0.269 4.269 4 S 0.136 5.864 5 C 0.063 3.937 6 C -0.029 4.029 7 H 0.109 0.891 8 C -0.147 4.147 9 C 0.149 3.851 10 N -0.750 5.750 11 C 0.716 3.284 12 O -0.595 6.595 13 N -0.630 5.630 14 C 0.103 3.897 15 C -0.116 4.116 16 C 0.247 3.753 17 O -0.586 6.586 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.122 3.878 27 N -0.470 5.470 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.176 0.824 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.394 0.606 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.270 0.730 44 H 0.063 0.937 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 10.314 -14.516 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.408 4.408 4 S 0.391 5.609 5 C -0.215 4.215 6 C -0.052 4.052 7 H 0.127 0.873 8 C -0.206 4.206 9 C 0.023 3.977 10 N -0.408 5.408 11 C 0.418 3.582 12 O -0.474 6.474 13 N -0.367 5.367 14 C -0.020 4.020 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.575 4.575 19 H 0.085 0.915 20 C -0.134 4.134 21 N -0.533 5.533 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.000 4.000 27 N -0.185 5.185 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.235 0.765 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.202 10.887 -14.261 23.516 hybrid contribution 0.050 0.083 0.596 0.603 sum -15.151 10.970 -13.666 23.166 Atomic orbital electron populations 1.20361 0.87074 1.03446 1.02905 1.20314 0.98303 0.86487 1.01518 1.26875 0.95492 1.04012 1.14468 1.84117 1.06855 1.02608 1.67291 1.26743 0.93788 0.98034 1.02960 1.20039 0.93213 0.95379 0.96540 0.87283 1.21948 0.99333 1.03387 0.95901 1.21096 0.91660 0.88765 0.96163 1.45014 1.42123 1.25744 1.27914 1.15465 0.78939 0.81860 0.81924 1.90894 1.72681 1.43396 1.40418 1.48028 1.40188 1.20346 1.28120 1.22241 0.99577 0.89296 0.90919 1.22721 0.93932 1.00461 0.98249 1.19507 0.90754 0.81979 0.87095 1.86085 1.80317 1.47985 1.25113 1.21544 0.91249 1.51412 0.93285 0.91477 1.25084 0.98648 0.93417 0.96202 1.69657 1.33901 1.49293 1.00440 0.86348 0.84308 0.77767 0.78471 1.19601 1.20774 1.20761 1.22945 0.88438 0.99988 0.88603 1.66126 1.04401 1.31748 1.16181 0.90671 0.90490 0.90718 0.80639 0.91788 0.90738 0.91680 0.91298 0.91335 0.77139 0.92631 0.91959 0.90528 0.90569 0.76476 0.92006 0.91879 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.31 36.01 0.37 -0.17 16 2 C 0.07 0.65 6.74 -84.22 -0.57 0.09 16 3 C -0.27 -2.33 11.13 29.12 0.32 -2.01 16 4 S 0.14 1.26 22.67 -107.50 -2.44 -1.17 16 5 C 0.06 0.68 6.03 -13.46 -0.08 0.60 16 6 C -0.03 -0.29 2.85 -91.77 -0.26 -0.55 16 7 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 8 C -0.15 -1.18 8.96 37.16 0.33 -0.85 16 9 C 0.15 1.90 4.92 -4.05 -0.02 1.88 16 10 N -0.75 -10.79 5.24 -65.23 -0.34 -11.13 16 11 C 0.72 14.31 8.49 -86.91 -0.74 13.57 16 12 O -0.60 -14.35 16.67 5.29 0.09 -14.26 16 13 N -0.63 -12.85 3.33 -176.00 -0.59 -13.44 16 14 C 0.10 1.74 6.57 -2.53 -0.02 1.72 16 15 C -0.12 -2.24 6.23 -24.59 -0.15 -2.39 16 16 C 0.25 5.91 0.85 -89.94 -0.08 5.83 16 17 O -0.59 -14.63 13.08 -35.23 -0.46 -15.09 16 18 C -0.54 -13.90 8.11 -34.44 -0.28 -14.18 16 19 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 20 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 21 N -0.89 -23.80 10.96 55.43 0.61 -23.19 16 22 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 C 0.12 2.96 5.39 -2.90 -0.02 2.95 16 27 N -0.47 -5.55 10.53 -8.06 -0.08 -5.63 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 33 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.39 4.58 6.13 -40.82 -0.25 4.33 16 38 H 0.06 0.73 7.30 -51.93 -0.38 0.35 16 39 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.38 9.91 7.24 45.56 0.33 10.24 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.06 1.68 8.00 -51.93 -0.42 1.27 16 45 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -31.66 382.19 -9.84 -41.50 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.09 Total: 13.05 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -1.28 Total: 8.22 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.41 Total: -53.40 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.37 Total: -29.35 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.44 Total: -1.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.66 -9.84 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.837 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds