Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33641 * 122.74680 * 2 1 4 4 S 1.76196 * 107.92295 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28288 * 0.02562 * 4 3 2 6 6 C 1.50693 * 124.91487 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46812 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47155 * 300.01890 * 6 5 4 9 9 C 1.52995 * 109.47488 * 60.02089 * 6 5 4 10 10 N 1.46497 * 109.47245 * 174.99964 * 9 6 5 11 11 C 1.34785 * 120.00212 * 179.97438 * 10 9 6 12 12 O 1.21583 * 119.99543 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99769 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65218 * 0.02641 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.83904 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47319 * 125.61066 * 180.16584 * 13 11 10 27 27 N 1.29027 * 110.16516 * 0.23589 * 5 4 3 28 28 H 1.09000 * 109.47312 * 90.02307 * 1 2 3 29 29 H 1.09001 * 109.46792 * 210.02428 * 1 2 3 30 30 H 1.09002 * 109.47063 * 330.01701 * 1 2 3 31 31 H 1.07997 * 126.03702 * 0.04622 * 3 2 1 32 32 H 1.08993 * 109.47226 * 60.00232 * 8 6 5 33 33 H 1.09003 * 109.47373 * 180.02562 * 8 6 5 34 34 H 1.09004 * 109.47098 * 299.99986 * 8 6 5 35 35 H 1.08993 * 109.47294 * 55.00037 * 9 6 5 36 36 H 1.09003 * 109.47130 * 294.99662 * 9 6 5 37 37 H 0.97000 * 120.00134 * 359.97438 * 10 9 6 38 38 H 1.08994 * 110.36742 * 36.99340 * 14 13 11 39 39 H 1.09008 * 110.36374 * 274.67201 * 14 13 11 40 40 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 41 41 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 42 42 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06766 * 61.74679 * 26 13 11 45 45 H 1.08999 * 109.85130 * 300.49036 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 1 3.9387 -3.0711 -0.0042 8 6 5.3626 -2.0444 -1.2529 9 6 5.3637 -2.0470 1.2456 10 7 6.2342 -3.2238 1.3056 11 6 7.1020 -3.3687 2.3267 12 8 7.1620 -2.5230 3.1981 13 7 7.9032 -4.4511 2.3816 14 6 7.9349 -5.5475 1.3967 15 6 9.3494 -6.1637 1.5346 16 6 9.5863 -6.0608 3.0645 17 8 8.9785 -7.1604 3.7453 18 6 11.0600 -5.9943 3.3725 19 1 11.7825 -6.0608 2.5726 20 6 11.4858 -5.8427 4.6752 21 7 10.6060 -5.7617 5.6493 22 14 13.3123 -5.7526 5.0562 23 1 14.0874 -5.8669 3.7947 24 1 13.6184 -4.4542 5.7088 25 1 13.6833 -6.8645 5.9680 26 6 8.8901 -4.7351 3.4379 27 7 2.2199 -1.1083 -0.0065 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 1.8391 2.1308 0.0007 32 1 5.9074 -1.1004 -1.2522 33 1 6.0709 -2.8730 -1.2543 34 1 4.7356 -2.1014 -2.1427 35 1 4.7325 -2.0164 2.1336 36 1 5.9744 -1.1452 1.2026 37 1 6.1861 -3.8987 0.6106 38 1 7.7875 -5.1573 0.3898 39 1 7.1729 -6.2907 1.6318 40 1 10.0861 -5.5777 0.9849 41 1 9.3564 -7.2034 1.2072 42 1 9.0655 -7.1237 4.7077 43 1 10.9056 -5.6554 6.5658 44 1 8.3888 -4.8379 4.4003 45 1 9.6244 -3.9310 3.4842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -61.705614 kcal Electronic energy + Delta-G solvation = -26949.993708 eV Core-core repulsion = 23093.161038 eV Total energy + Delta-G solvation = -3856.832671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36070 -40.89186 -39.25289 -37.46523 -36.07034 -34.29159 -34.18918 -32.13683 -31.45461 -29.59331 -28.55189 -27.91793 -26.73639 -25.50497 -24.08009 -22.05451 -21.44543 -21.15120 -20.65932 -19.30191 -18.94730 -18.36405 -17.54385 -17.01813 -16.90882 -16.47317 -16.13492 -16.02156 -15.72351 -15.37756 -14.82370 -14.76731 -14.69495 -14.57935 -14.15023 -13.92284 -13.83291 -13.52380 -13.48123 -13.35179 -13.25568 -12.87162 -12.78415 -12.53286 -12.45634 -12.31388 -12.29861 -12.23966 -12.07742 -12.02776 -11.36717 -11.17189 -10.68716 -10.64249 -10.41097 -10.30789 -10.27241 -9.67664 -9.41145 -8.25705 -6.41131 -0.32077 0.37829 0.77905 1.40342 1.44054 1.54062 1.55604 1.78766 2.12213 2.38447 2.84612 3.01285 3.18705 3.56837 3.82566 3.83614 3.91326 4.09617 4.19542 4.22058 4.28493 4.37170 4.40562 4.58580 4.60485 4.63238 4.73991 4.76889 4.81018 4.85863 4.90830 5.01342 5.06360 5.15427 5.21457 5.24622 5.34282 5.36868 5.41223 5.51193 5.76716 6.02902 6.15624 6.66051 6.73732 7.03996 7.29753 7.37434 7.53667 8.80622 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002146 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.322284 B =13043.665571 C =13293.734196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 C -0.262 4.262 4 S 0.140 5.860 5 C 0.045 3.955 6 C -0.017 4.017 7 H 0.114 0.886 8 C -0.144 4.144 9 C 0.152 3.848 10 N -0.724 5.724 11 C 0.712 3.288 12 O -0.644 6.644 13 N -0.634 5.634 14 C 0.106 3.894 15 C -0.110 4.110 16 C 0.231 3.769 17 O -0.588 6.588 18 C -0.554 4.554 19 H 0.069 0.931 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.963 3.037 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.278 1.278 26 C 0.140 3.860 27 N -0.494 5.494 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.204 0.796 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.376 0.624 43 H 0.270 0.730 44 H 0.025 0.975 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 10.588 -17.071 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.401 4.401 4 S 0.396 5.604 5 C -0.233 4.233 6 C -0.040 4.040 7 H 0.132 0.868 8 C -0.203 4.203 9 C 0.026 3.974 10 N -0.382 5.382 11 C 0.414 3.586 12 O -0.526 6.526 13 N -0.371 5.371 14 C -0.015 4.015 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.396 6.396 18 C -0.592 4.592 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.557 5.557 22 Si 0.789 3.211 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.204 1.204 26 C 0.016 3.984 27 N -0.210 5.210 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.221 0.779 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.226 0.774 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.809 11.131 -16.895 25.677 hybrid contribution 0.166 0.064 1.398 1.409 sum -15.644 11.195 -15.498 24.703 Atomic orbital electron populations 1.20442 0.85275 1.04035 1.03797 1.20798 0.99662 0.86406 1.02012 1.27243 0.94814 1.05064 1.12953 1.84079 1.07633 1.01802 1.66920 1.26847 0.93841 0.98835 1.03809 1.19924 0.92806 0.95538 0.95687 0.86844 1.21957 0.99296 1.03836 0.95168 1.21140 0.91324 0.87787 0.97111 1.44746 1.40425 1.26502 1.26517 1.15676 0.79390 0.81127 0.82452 1.90858 1.74116 1.45073 1.42580 1.47945 1.39653 1.21461 1.28026 1.22439 0.98270 0.88435 0.92401 1.22720 0.95677 1.01897 0.94462 1.19742 0.89830 0.81281 0.90056 1.86076 1.80460 1.48532 1.24567 1.21888 0.92533 1.51305 0.93522 0.91296 1.25839 1.02426 0.93218 0.96260 1.69767 1.35436 1.49869 1.00597 0.85421 0.79880 0.77413 0.78405 1.18713 1.21121 1.20388 1.22428 0.88215 0.99340 0.88380 1.66142 1.04976 1.33087 1.16753 0.89578 0.91302 0.88733 0.77926 0.91808 0.89681 0.90583 0.93279 0.91753 0.75004 0.87579 0.91105 0.89672 0.89091 0.77419 0.92111 0.95603 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.31 71.24 0.73 -0.19 16 2 C 0.04 0.79 6.74 41.53 0.28 1.07 16 3 C -0.26 -4.04 11.13 66.78 0.74 -3.30 16 4 S 0.14 2.45 22.67 -56.49 -1.28 1.17 16 5 C 0.04 0.92 6.03 88.52 0.53 1.45 16 6 C -0.02 -0.31 2.85 -11.54 -0.03 -0.34 16 7 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 8 C -0.14 -1.95 8.96 71.98 0.65 -1.30 16 9 C 0.15 3.76 4.92 86.38 0.43 4.19 16 10 N -0.72 -19.71 5.24 -478.55 -2.51 -22.22 16 11 C 0.71 28.32 8.49 179.05 1.52 29.84 16 12 O -0.64 -31.96 16.67 -3.98 -0.07 -32.03 16 13 N -0.63 -25.61 3.33 -829.01 -2.76 -28.37 16 14 C 0.11 3.29 6.57 86.85 0.57 3.86 16 15 C -0.11 -4.01 6.23 31.98 0.20 -3.82 16 16 C 0.23 11.11 0.85 -10.35 -0.01 11.10 16 17 O -0.59 -29.72 13.08 -148.98 -1.95 -31.67 16 18 C -0.55 -28.88 8.11 25.60 0.21 -28.68 16 19 H 0.07 3.48 7.77 -2.91 -0.02 3.46 16 20 C 0.02 1.22 5.27 84.66 0.45 1.67 16 21 N -0.92 -50.33 10.96 21.45 0.24 -50.09 16 22 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.14 7.02 5.39 86.67 0.47 7.49 16 27 N -0.49 -11.19 10.53 -179.40 -1.89 -13.08 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.20 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.06 0.88 7.93 -2.39 -0.02 0.86 16 33 H 0.08 0.96 7.18 -2.39 -0.02 0.94 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.67 8.10 -2.39 -0.02 1.66 16 37 H 0.41 8.26 6.13 -92.71 -0.57 7.69 16 38 H 0.11 2.25 7.30 -2.39 -0.02 2.24 16 39 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.08 2.96 8.03 -2.38 -0.02 2.94 16 41 H 0.09 3.06 8.14 -2.38 -0.02 3.05 16 42 H 0.38 20.07 7.24 -74.06 -0.54 19.53 16 43 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 44 H 0.03 1.45 8.00 -2.39 -0.02 1.43 16 45 H 0.03 1.72 7.81 -2.39 -0.02 1.70 16 Total: -1.00 -71.48 382.19 -1.55 -73.03 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.09 Total: 36.04 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 6.73 Total: 23.03 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -6.93 Total: -113.76 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -2.01 Total: -63.69 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.28 Total: 1.17 kcal Total: -71.48 -1.55 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.327 kcal (2) G-P(sol) polarization free energy of solvation -71.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds