Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.75439 * 2 1 4 4 S 1.76193 * 107.92863 * 179.76417 * 3 2 1 5 5 C 1.70985 * 90.28189 * 0.27905 * 4 3 2 6 6 C 1.50698 * 124.91784 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47318 * 179.69789 * 6 5 4 8 8 C 1.53006 * 109.46936 * 59.69771 * 6 5 4 9 9 C 1.52997 * 109.47239 * 299.69983 * 6 5 4 10 10 N 1.46499 * 109.47513 * 184.99714 * 9 6 5 11 11 C 1.34770 * 120.00278 * 179.97438 * 10 9 6 12 12 O 1.21586 * 120.00020 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99924 * 179.97438 * 11 10 9 14 14 C 1.47419 * 125.64850 * 359.97438 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.91019 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47319 * 125.61416 * 180.20438 * 13 11 10 27 27 N 1.29028 * 110.16629 * 359.71676 * 5 4 3 28 28 H 1.09002 * 109.46357 * 270.02505 * 1 2 3 29 29 H 1.08999 * 109.47461 * 30.02006 * 1 2 3 30 30 H 1.08994 * 109.47403 * 150.02832 * 1 2 3 31 31 H 1.07998 * 126.03094 * 359.97167 * 3 2 1 32 32 H 1.08996 * 109.47132 * 300.00132 * 8 6 5 33 33 H 1.08999 * 109.47023 * 60.00366 * 8 6 5 34 34 H 1.08996 * 109.46787 * 180.02562 * 8 6 5 35 35 H 1.09010 * 109.47226 * 64.99836 * 9 6 5 36 36 H 1.09003 * 109.47226 * 305.00269 * 9 6 5 37 37 H 0.97003 * 119.99773 * 359.97438 * 10 9 6 38 38 H 1.08994 * 110.36742 * 37.06455 * 14 13 11 39 39 H 1.09008 * 110.36374 * 274.74316 * 14 13 11 40 40 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 41 41 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 42 42 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06766 * 61.67566 * 26 13 11 45 45 H 1.08999 * 109.85130 * 300.41923 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0069 5 6 3.5039 -0.9820 0.0008 6 6 4.4834 -2.1272 0.0020 7 1 3.9386 -3.0713 0.0026 8 6 5.3627 -2.0449 1.2515 9 6 5.3634 -2.0471 -1.2470 10 7 6.2339 -3.2238 -1.3075 11 6 7.1007 -3.3690 -2.3292 12 8 7.1607 -2.5231 -3.2005 13 7 7.9019 -4.4514 -2.3846 14 6 7.9345 -5.5476 -1.3993 15 6 8.4949 -6.7639 -2.1777 16 6 9.5465 -6.0880 -3.0968 17 8 10.7783 -5.8945 -2.3986 18 6 9.7659 -6.9030 -4.3453 19 1 9.2478 -7.8416 -4.4755 20 6 10.6236 -6.4475 -5.3240 21 7 11.2545 -5.3044 -5.1655 22 14 10.8897 -7.4539 -6.8750 23 1 9.5954 -7.6238 -7.5830 24 1 11.8512 -6.7513 -7.7622 25 1 11.4344 -8.7871 -6.5127 26 6 8.8933 -4.7320 -3.4375 27 7 2.2199 -1.1084 0.0004 28 1 -0.3632 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.8392 2.1307 -0.0004 32 1 5.9075 -1.1009 1.2508 33 1 4.7358 -2.1021 2.1413 34 1 6.0714 -2.8730 1.2521 35 1 5.9742 -1.1452 -1.2040 36 1 4.7320 -2.0161 -2.1350 37 1 6.1864 -3.8985 -0.6122 38 1 6.9294 -5.7604 -1.0353 39 1 8.5933 -5.2921 -0.5693 40 1 7.7135 -7.2450 -2.7661 41 1 8.9674 -7.4766 -1.5016 42 1 11.4573 -5.4416 -2.9171 43 1 11.8582 -4.9842 -5.8539 44 1 9.6517 -3.9492 -3.4554 45 1 8.3973 -4.7925 -4.4062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592010111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -38.603952 kcal Electronic energy + Delta-G solvation = -26947.539691 eV Core-core repulsion = 23091.708783 eV Total energy + Delta-G solvation = -3855.830908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26910 -39.66907 -37.63890 -36.29902 -34.26481 -33.14289 -32.18588 -31.27202 -29.92490 -27.94166 -27.86686 -26.77772 -25.29874 -24.29539 -22.55782 -21.19759 -20.12236 -19.65044 -19.48932 -17.91193 -17.45093 -17.05900 -16.20157 -15.76129 -15.34558 -15.22166 -14.92035 -14.73755 -14.28134 -14.11872 -13.89659 -13.53050 -13.28751 -13.13312 -12.94405 -12.85221 -12.80996 -12.70431 -12.18899 -12.05640 -11.74956 -11.67014 -11.56368 -11.36231 -11.27935 -11.02575 -10.81334 -10.65891 -10.50745 -10.16349 -9.92531 -9.67425 -9.64365 -9.32308 -8.98028 -8.89553 -8.66014 -8.31433 -7.77453 -6.27521 -4.35935 0.40954 1.08990 1.49402 2.46480 3.00325 3.24050 3.29380 3.31354 3.71381 3.72917 4.27327 4.36621 4.49705 4.61629 4.66752 4.82179 4.92583 5.00190 5.06941 5.24472 5.34277 5.37017 5.40655 5.44214 5.53902 5.64699 5.69999 5.75096 5.82767 5.87448 5.93994 6.01068 6.10072 6.50803 6.66168 6.72195 6.88897 6.97324 7.25347 7.32470 7.46829 7.60791 7.74593 8.03528 8.50391 8.67232 9.09870 9.31537 9.41152 10.80312 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024560 B = 0.002152 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.788576 B =13010.772768 C =13253.398312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 C -0.269 4.269 4 S 0.136 5.864 5 C 0.063 3.937 6 C -0.029 4.029 7 H 0.109 0.891 8 C -0.148 4.148 9 C 0.149 3.851 10 N -0.750 5.750 11 C 0.716 3.284 12 O -0.595 6.595 13 N -0.630 5.630 14 C 0.103 3.897 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.586 6.586 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.122 3.878 27 N -0.470 5.470 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.394 0.606 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.271 0.729 44 H 0.063 0.937 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.382 9.889 14.062 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.408 4.408 4 S 0.392 5.608 5 C -0.215 4.215 6 C -0.052 4.052 7 H 0.127 0.873 8 C -0.206 4.206 9 C 0.023 3.977 10 N -0.408 5.408 11 C 0.418 3.582 12 O -0.474 6.474 13 N -0.367 5.367 14 C -0.020 4.020 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.000 4.000 27 N -0.185 5.185 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.194 0.806 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.235 0.765 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.831 10.446 13.782 23.445 hybrid contribution -0.546 -0.344 -1.032 1.218 sum -16.377 10.102 12.750 23.083 Atomic orbital electron populations 1.20358 0.87079 1.03444 1.02904 1.20314 0.98299 0.86491 1.01532 1.26874 0.95500 1.04013 1.14459 1.84121 1.06842 1.02599 1.67278 1.26746 0.93786 0.98042 1.02958 1.20038 0.93204 0.95359 0.96551 0.87300 1.21950 0.99329 1.03427 0.95886 1.21100 0.91660 0.88776 0.96154 1.45012 1.42210 1.25693 1.27874 1.15464 0.78922 0.81821 0.81982 1.90895 1.72672 1.43301 1.40527 1.48031 1.40071 1.20488 1.28095 1.22241 0.99221 0.88214 0.92366 1.22723 0.98502 0.95689 0.98471 1.19491 0.81741 0.88908 0.89119 1.86084 1.25468 1.82291 1.45658 1.21469 1.27079 1.06914 1.02164 0.91589 1.25076 0.94806 0.94796 0.98609 1.69637 1.28585 1.19523 1.35574 0.86455 0.78191 0.80086 0.82132 1.20035 1.21080 1.20007 1.22945 0.88897 0.99675 0.88450 1.66131 1.04402 1.31744 1.16187 0.90671 0.90720 0.90494 0.80640 0.91794 0.91677 0.90699 0.91331 0.91299 0.77139 0.92613 0.91959 0.90533 0.90565 0.76487 0.91897 0.91862 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.31 36.00 0.37 -0.17 16 2 C 0.07 0.65 6.74 -84.22 -0.57 0.09 16 3 C -0.27 -2.33 11.13 29.12 0.32 -2.01 16 4 S 0.14 1.27 22.67 -107.50 -2.44 -1.17 16 5 C 0.06 0.68 6.03 -13.46 -0.08 0.60 16 6 C -0.03 -0.29 2.85 -91.77 -0.26 -0.55 16 7 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.15 -1.19 8.96 37.16 0.33 -0.86 16 9 C 0.15 1.90 4.93 -4.04 -0.02 1.88 16 10 N -0.75 -10.79 5.24 -65.22 -0.34 -11.14 16 11 C 0.72 14.31 8.49 -86.92 -0.74 13.58 16 12 O -0.60 -14.35 16.67 5.29 0.09 -14.26 16 13 N -0.63 -12.86 3.33 -176.00 -0.59 -13.44 16 14 C 0.10 1.74 6.57 -2.53 -0.02 1.72 16 15 C -0.12 -2.25 6.23 -24.59 -0.15 -2.40 16 16 C 0.25 5.93 0.85 -89.94 -0.08 5.85 16 17 O -0.59 -14.57 13.08 -35.23 -0.46 -15.03 16 18 C -0.54 -13.97 8.11 -34.44 -0.28 -14.25 16 19 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 20 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 21 N -0.89 -23.80 10.96 55.43 0.61 -23.19 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.12 2.97 5.39 -2.90 -0.02 2.95 16 27 N -0.47 -5.54 10.53 -8.05 -0.08 -5.62 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.57 7.18 -51.93 -0.37 0.19 16 35 H 0.07 0.91 8.11 -51.92 -0.42 0.49 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.39 4.58 6.13 -40.82 -0.25 4.33 16 38 H 0.06 0.74 7.30 -51.93 -0.38 0.36 16 39 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 40 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.38 9.86 7.24 45.56 0.33 10.19 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 1.68 8.00 -51.93 -0.42 1.26 16 45 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -31.60 382.19 -9.84 -41.44 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.09 Total: 13.04 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.28 Total: 8.17 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.41 Total: -53.39 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.37 Total: -29.29 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.44 Total: -1.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.60 -9.84 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.834 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds