Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.75439 * 2 1 4 4 S 1.76193 * 107.92863 * 179.76417 * 3 2 1 5 5 C 1.70985 * 90.28189 * 0.27905 * 4 3 2 6 6 C 1.50698 * 124.91784 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47318 * 179.69789 * 6 5 4 8 8 C 1.53006 * 109.46936 * 59.69771 * 6 5 4 9 9 C 1.52997 * 109.47239 * 299.69983 * 6 5 4 10 10 N 1.46499 * 109.47513 * 184.99714 * 9 6 5 11 11 C 1.34770 * 120.00278 * 179.97438 * 10 9 6 12 12 O 1.21586 * 120.00020 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99924 * 179.97438 * 11 10 9 14 14 C 1.47419 * 125.64850 * 359.97438 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.91019 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47319 * 125.61416 * 180.20438 * 13 11 10 27 27 N 1.29028 * 110.16629 * 359.71676 * 5 4 3 28 28 H 1.09002 * 109.46357 * 270.02505 * 1 2 3 29 29 H 1.08999 * 109.47461 * 30.02006 * 1 2 3 30 30 H 1.08994 * 109.47403 * 150.02832 * 1 2 3 31 31 H 1.07998 * 126.03094 * 359.97167 * 3 2 1 32 32 H 1.08996 * 109.47132 * 300.00132 * 8 6 5 33 33 H 1.08999 * 109.47023 * 60.00366 * 8 6 5 34 34 H 1.08996 * 109.46787 * 180.02562 * 8 6 5 35 35 H 1.09010 * 109.47226 * 64.99836 * 9 6 5 36 36 H 1.09003 * 109.47226 * 305.00269 * 9 6 5 37 37 H 0.97003 * 119.99773 * 359.97438 * 10 9 6 38 38 H 1.08994 * 110.36742 * 37.06455 * 14 13 11 39 39 H 1.09008 * 110.36374 * 274.74316 * 14 13 11 40 40 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 41 41 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 42 42 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06766 * 61.67566 * 26 13 11 45 45 H 1.08999 * 109.85130 * 300.41923 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0069 5 6 3.5039 -0.9820 0.0008 6 6 4.4834 -2.1272 0.0020 7 1 3.9386 -3.0713 0.0026 8 6 5.3627 -2.0449 1.2515 9 6 5.3634 -2.0471 -1.2470 10 7 6.2339 -3.2238 -1.3075 11 6 7.1007 -3.3690 -2.3292 12 8 7.1607 -2.5231 -3.2005 13 7 7.9019 -4.4514 -2.3846 14 6 7.9345 -5.5476 -1.3993 15 6 8.4949 -6.7639 -2.1777 16 6 9.5465 -6.0880 -3.0968 17 8 10.7783 -5.8945 -2.3986 18 6 9.7659 -6.9030 -4.3453 19 1 9.2478 -7.8416 -4.4755 20 6 10.6236 -6.4475 -5.3240 21 7 11.2545 -5.3044 -5.1655 22 14 10.8897 -7.4539 -6.8750 23 1 9.5954 -7.6238 -7.5830 24 1 11.8512 -6.7513 -7.7622 25 1 11.4344 -8.7871 -6.5127 26 6 8.8933 -4.7320 -3.4375 27 7 2.2199 -1.1084 0.0004 28 1 -0.3632 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.8392 2.1307 -0.0004 32 1 5.9075 -1.1009 1.2508 33 1 4.7358 -2.1021 2.1413 34 1 6.0714 -2.8730 1.2521 35 1 5.9742 -1.1452 -1.2040 36 1 4.7320 -2.0161 -2.1350 37 1 6.1864 -3.8985 -0.6122 38 1 6.9294 -5.7604 -1.0353 39 1 8.5933 -5.2921 -0.5693 40 1 7.7135 -7.2450 -2.7661 41 1 8.9674 -7.4766 -1.5016 42 1 11.4573 -5.4416 -2.9171 43 1 11.8582 -4.9842 -5.8539 44 1 9.6517 -3.9492 -3.4554 45 1 8.3973 -4.7925 -4.4062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -61.550598 kcal Electronic energy + Delta-G solvation = -26948.534732 eV Core-core repulsion = 23091.708783 eV Total energy + Delta-G solvation = -3856.825949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36004 -40.89052 -39.25236 -37.46490 -36.06727 -34.29234 -34.18678 -32.13655 -31.45647 -29.59101 -28.55209 -27.91809 -26.73622 -25.50380 -24.08024 -22.05570 -21.44638 -21.15147 -20.65785 -19.29832 -18.94747 -18.36791 -17.50464 -17.12661 -16.83009 -16.38651 -16.25059 -16.05048 -15.67671 -15.34857 -14.86321 -14.76559 -14.65306 -14.55541 -14.22903 -13.95006 -13.76236 -13.50762 -13.49003 -13.33315 -13.29050 -12.82607 -12.78823 -12.52391 -12.46846 -12.32189 -12.31854 -12.28141 -12.07095 -12.03779 -11.36624 -11.16487 -10.68815 -10.63142 -10.41211 -10.30993 -10.27471 -9.67766 -9.41054 -8.25554 -6.40979 -0.32120 0.37790 0.78004 1.42518 1.43895 1.51412 1.55469 1.78710 2.12200 2.38455 2.84479 3.01248 3.18755 3.56809 3.82036 3.83546 3.91400 4.09493 4.19537 4.21975 4.28503 4.37055 4.40770 4.58402 4.59989 4.63267 4.73727 4.76979 4.80915 4.85643 4.90649 5.01124 5.06310 5.15383 5.21059 5.24411 5.34415 5.36734 5.41164 5.50891 5.76552 6.03020 6.15614 6.65368 6.73519 7.04015 7.29901 7.37797 7.53714 8.80379 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024560 B = 0.002152 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.788576 B =13010.772768 C =13253.398312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 C -0.262 4.262 4 S 0.139 5.861 5 C 0.045 3.955 6 C -0.017 4.017 7 H 0.115 0.885 8 C -0.145 4.145 9 C 0.152 3.848 10 N -0.724 5.724 11 C 0.712 3.288 12 O -0.644 6.644 13 N -0.634 5.634 14 C 0.107 3.893 15 C -0.111 4.111 16 C 0.233 3.767 17 O -0.587 6.587 18 C -0.557 4.557 19 H 0.068 0.932 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.962 3.038 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.141 3.859 27 N -0.493 5.493 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.204 0.796 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.412 0.588 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.376 0.624 43 H 0.270 0.730 44 H 0.028 0.972 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 9.455 15.832 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.401 4.401 4 S 0.394 5.606 5 C -0.233 4.233 6 C -0.039 4.039 7 H 0.133 0.867 8 C -0.203 4.203 9 C 0.026 3.974 10 N -0.382 5.382 11 C 0.414 3.586 12 O -0.526 6.526 13 N -0.371 5.371 14 C -0.015 4.015 15 C -0.149 4.149 16 C 0.192 3.808 17 O -0.395 6.395 18 C -0.596 4.596 19 H 0.086 0.914 20 C -0.176 4.176 21 N -0.555 5.555 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.192 1.192 26 C 0.017 3.983 27 N -0.209 5.209 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.221 0.779 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.250 0.750 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.226 0.774 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.472 9.980 15.626 25.476 hybrid contribution -0.094 -0.133 -1.575 1.584 sum -17.566 9.847 14.051 24.555 Atomic orbital electron populations 1.20439 0.85258 1.04044 1.03802 1.20801 0.99663 0.86399 1.02003 1.27241 0.94790 1.05075 1.12956 1.84098 1.07670 1.01869 1.66937 1.26844 0.93844 0.98801 1.03816 1.19920 0.92777 0.95593 0.95614 0.86698 1.21956 0.99295 1.03768 0.95273 1.21144 0.91317 0.87746 0.97167 1.44745 1.40523 1.26446 1.26471 1.15674 0.79357 0.81113 0.82505 1.90859 1.74109 1.44971 1.42695 1.47947 1.39436 1.21708 1.28008 1.22438 1.02200 0.85651 0.91223 1.22721 0.97217 0.96758 0.98162 1.19708 0.82233 0.88809 0.90017 1.86073 1.25732 1.82131 1.45592 1.21830 1.27167 1.07243 1.03317 0.91429 1.25821 0.94762 0.95707 1.01332 1.69748 1.28944 1.20614 1.36222 0.85539 0.77935 0.78933 0.78822 1.19927 1.21029 1.19176 1.22425 0.88596 0.99050 0.88271 1.66148 1.04944 1.33060 1.16729 0.89575 0.88748 0.91268 0.77935 0.91909 0.90532 0.89789 0.91908 0.93119 0.75002 0.87853 0.90713 0.89933 0.89016 0.77391 0.92062 0.95375 0.95304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.31 71.24 0.73 -0.18 16 2 C 0.04 0.79 6.74 41.52 0.28 1.07 16 3 C -0.26 -4.04 11.13 66.78 0.74 -3.30 16 4 S 0.14 2.44 22.67 -56.49 -1.28 1.16 16 5 C 0.05 0.92 6.03 88.52 0.53 1.46 16 6 C -0.02 -0.30 2.85 -11.54 -0.03 -0.34 16 7 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 8 C -0.14 -2.00 8.96 71.98 0.65 -1.36 16 9 C 0.15 3.76 4.93 86.38 0.43 4.19 16 10 N -0.72 -19.72 5.24 -478.53 -2.51 -22.23 16 11 C 0.71 28.33 8.49 179.05 1.52 29.85 16 12 O -0.64 -31.97 16.67 -3.99 -0.07 -32.04 16 13 N -0.63 -25.63 3.33 -829.01 -2.76 -28.39 16 14 C 0.11 3.30 6.57 86.85 0.57 3.87 16 15 C -0.11 -4.08 6.23 31.98 0.20 -3.88 16 16 C 0.23 11.19 0.85 -10.35 -0.01 11.18 16 17 O -0.59 -29.44 13.08 -148.98 -1.95 -31.39 16 18 C -0.56 -29.18 8.11 25.60 0.21 -28.97 16 19 H 0.07 3.42 7.77 -2.91 -0.02 3.40 16 20 C 0.02 1.30 5.27 84.66 0.45 1.74 16 21 N -0.92 -50.16 10.96 21.45 0.24 -49.93 16 22 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 C 0.14 7.04 5.39 86.67 0.47 7.50 16 27 N -0.49 -11.10 10.53 -179.39 -1.89 -12.99 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.20 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.06 0.90 7.92 -2.39 -0.02 0.88 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.01 7.18 -2.39 -0.02 0.99 16 35 H 0.06 1.65 8.11 -2.38 -0.02 1.63 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.41 8.27 6.13 -92.71 -0.57 7.70 16 38 H 0.10 2.26 7.30 -2.39 -0.02 2.24 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.08 2.93 8.03 -2.38 -0.02 2.91 16 41 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 42 H 0.38 19.91 7.24 -74.06 -0.54 19.37 16 43 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 44 H 0.03 1.57 8.00 -2.39 -0.02 1.55 16 45 H 0.03 1.61 7.81 -2.39 -0.02 1.59 16 Total: -1.00 -71.16 382.19 -1.55 -72.71 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.09 Total: 35.98 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 6.73 Total: 22.83 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -6.93 Total: -113.54 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -2.01 Total: -63.43 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.28 Total: 1.16 kcal Total: -71.16 -1.55 -72.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.158 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds