Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31991 * 122.71906 * 2 1 4 4 C 1.29621 * 116.91733 * 180.02562 * 3 2 1 5 5 N 1.39003 * 124.94518 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99983 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00324 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99811 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.47276 * 300.01014 * 8 6 5 10 10 C 1.53001 * 109.47173 * 60.00515 * 8 6 5 11 11 N 1.46895 * 109.47362 * 180.02562 * 8 6 5 12 12 C 1.47846 * 111.00325 * 188.61530 * 11 8 6 13 13 C 1.54904 * 104.79572 * 213.63959 * 12 11 8 14 14 C 1.55135 * 101.65762 * 37.06463 * 13 12 11 15 15 O 1.42902 * 110.85534 * 82.80047 * 14 13 12 16 16 C 1.50701 * 110.71302 * 205.96517 * 14 13 12 17 17 H 1.07993 * 119.99957 * 113.59510 * 16 14 13 18 18 C 1.37875 * 119.99820 * 293.60652 * 16 14 13 19 19 N 1.31510 * 120.00033 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99964 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47480 * 89.99467 * 20 18 16 22 22 H 1.48499 * 109.47443 * 209.99402 * 20 18 16 23 23 H 1.48499 * 109.47020 * 329.99977 * 20 18 16 24 24 C 1.47441 * 110.99977 * 67.76928 * 11 8 6 25 25 S 1.70977 * 110.11074 * 359.72545 * 4 3 2 26 26 C 1.33448 * 122.71155 * 180.02562 * 2 1 3 27 27 C 1.50694 * 125.96927 * 359.95575 * 26 2 1 28 28 H 1.08998 * 109.46681 * 269.95900 * 1 2 3 29 29 H 1.09000 * 109.46771 * 29.95465 * 1 2 3 30 30 H 1.08997 * 109.47631 * 149.95644 * 1 2 3 31 31 H 0.96998 * 119.99376 * 0.02562 * 5 4 3 32 32 H 1.09000 * 109.47582 * 176.57646 * 10 8 6 33 33 H 1.09004 * 109.47017 * 296.57445 * 10 8 6 34 34 H 1.09002 * 109.47464 * 56.56957 * 10 8 6 35 35 H 1.09000 * 110.36870 * 332.46251 * 12 11 8 36 36 H 1.08995 * 110.37475 * 94.80420 * 12 11 8 37 37 H 1.09000 * 110.98872 * 278.97794 * 13 12 11 38 38 H 1.09001 * 110.99336 * 155.15882 * 13 12 11 39 39 H 0.96702 * 113.99768 * 66.31798 * 15 14 13 40 40 H 0.97001 * 119.99738 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.89371 * 242.66479 * 24 11 8 42 42 H 1.09005 * 109.88700 * 3.69411 * 24 11 8 43 43 H 1.09005 * 109.46996 * 90.00767 * 27 26 2 44 44 H 1.08994 * 109.47544 * 330.00401 * 27 26 2 45 45 H 1.08997 * 109.47314 * 210.00163 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2204 1.1105 0.0000 4 6 3.5100 0.9795 -0.0005 5 7 4.4173 2.0325 -0.0011 6 6 5.7414 1.7812 -0.0011 7 8 6.1414 0.6363 -0.0010 8 6 6.7250 2.9229 -0.0012 9 1 6.5728 3.5337 -0.8911 10 6 6.5116 3.7801 1.2481 11 7 8.0939 2.3900 -0.0017 12 6 9.0829 3.4694 0.2049 13 6 10.3167 3.0402 -0.6275 14 6 9.6477 2.3950 -1.8697 15 8 9.2752 3.3927 -2.8226 16 6 10.5624 1.3756 -2.4985 17 1 10.2943 0.3296 -2.4866 18 6 11.7415 1.7785 -3.0886 19 7 12.0678 3.0524 -3.1033 20 14 12.8756 0.5149 -3.8674 21 1 12.5110 0.3362 -5.2959 22 1 14.2810 0.9846 -3.7704 23 1 12.7362 -0.7807 -3.1553 24 6 8.3969 1.7133 -1.2762 25 16 3.9326 -0.6773 0.0066 26 6 2.2282 -1.1228 -0.0005 27 6 1.6803 -2.5267 -0.0002 28 1 -0.3632 -0.0007 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5145 31 1 4.0974 2.9482 -0.0008 32 1 7.2619 4.5701 1.2793 33 1 5.5168 4.2248 1.2180 34 1 6.6037 3.1561 2.1371 35 1 8.6904 4.4185 -0.1601 36 1 9.3452 3.5468 1.2600 37 1 10.9188 2.3109 -0.0855 38 1 10.9160 3.9051 -0.9119 39 1 10.0252 3.8513 -3.2254 40 1 12.8972 3.3359 -3.5188 41 1 8.6002 0.6577 -1.0964 42 1 7.5550 1.8174 -1.9606 43 1 1.5477 -2.8651 -1.0278 44 1 0.7195 -2.5416 0.5142 45 1 2.3776 -3.1887 0.5132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -52.914325 kcal Electronic energy + Delta-G solvation = -27630.815008 eV Core-core repulsion = 23774.363556 eV Total energy + Delta-G solvation = -3856.451452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90119 -40.78951 -39.79724 -36.85034 -36.37226 -34.14161 -33.88282 -32.95101 -30.46866 -30.20791 -29.53756 -26.87837 -26.27032 -25.61537 -24.36506 -22.49004 -21.48890 -21.46183 -20.26251 -19.23219 -19.08442 -18.02164 -17.78686 -17.03650 -16.90968 -16.87181 -16.28650 -16.02091 -15.64207 -15.51626 -14.88115 -14.72706 -14.11650 -13.90117 -13.86763 -13.86264 -13.82806 -13.68242 -13.54136 -13.35906 -13.25300 -13.02562 -12.87435 -12.73565 -12.52827 -12.48275 -12.29187 -12.12921 -12.02474 -11.83660 -11.67481 -11.20567 -10.91050 -10.79986 -10.64658 -10.14370 -10.10307 -9.30676 -9.11231 -8.24454 -6.38064 -0.31054 0.11255 0.88885 1.15083 1.38400 1.39853 1.40750 1.50534 1.88953 2.37260 2.95023 3.01212 3.33355 3.59076 3.84826 3.86953 4.05724 4.12855 4.20441 4.24824 4.37378 4.47973 4.52375 4.63519 4.68981 4.75209 4.76459 4.81031 4.82065 4.87252 4.92008 4.99632 5.10486 5.14797 5.19313 5.27050 5.46341 5.47374 5.55744 5.76215 5.78874 5.88911 6.10976 6.17299 6.64733 6.69697 6.73857 7.32269 7.42907 8.80979 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002823 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.860451 B = 9914.671452 C =10963.476797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.061 3.939 3 N -0.522 5.522 4 C 0.230 3.770 5 N -0.614 5.614 6 C 0.519 3.481 7 O -0.510 6.510 8 C 0.068 3.932 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.515 5.515 12 C 0.056 3.944 13 C -0.125 4.125 14 C 0.220 3.780 15 O -0.597 6.597 16 C -0.559 4.559 17 H 0.048 0.952 18 C 0.032 3.968 19 N -0.911 5.911 20 Si 0.957 3.043 21 H -0.277 1.277 22 H -0.276 1.276 23 H -0.274 1.274 24 C 0.084 3.916 25 S 0.198 5.802 26 C -0.280 4.280 27 C -0.068 4.068 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.434 0.566 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.379 0.621 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.066 -1.675 9.107 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 N -0.246 5.246 4 C -0.137 4.137 5 N -0.266 5.266 6 C 0.305 3.695 7 O -0.383 6.383 8 C -0.044 4.044 9 H 0.098 0.902 10 C -0.197 4.197 11 N -0.240 5.240 12 C -0.071 4.071 13 C -0.164 4.164 14 C 0.180 3.820 15 O -0.407 6.407 16 C -0.598 4.598 17 H 0.066 0.934 18 C -0.168 4.168 19 N -0.552 5.552 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.044 4.044 25 S 0.449 5.551 26 C -0.402 4.402 27 C -0.127 4.127 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.275 0.725 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.368 -2.845 9.646 21.823 hybrid contribution 0.569 0.741 -1.582 1.837 sum -18.799 -2.104 8.063 20.563 Atomic orbital electron populations 1.20430 0.84749 1.04107 1.03776 1.20315 0.99113 0.85371 1.02235 1.66209 1.02176 1.33685 1.22522 1.23426 0.90809 0.94731 1.04691 1.42788 1.03795 1.08830 1.71188 1.21393 0.81703 0.91808 0.74585 1.90654 1.77305 1.23470 1.46885 1.21785 0.88327 0.91838 1.02451 0.90236 1.21943 1.04512 0.99081 0.94173 1.63519 1.00676 1.26583 1.33176 1.23060 0.91206 0.92228 1.00576 1.22967 0.96508 0.99922 0.97006 1.19958 0.90325 0.85679 0.86070 1.86047 1.38851 1.55356 1.60463 1.21846 1.05465 0.94091 1.38361 0.93418 1.25628 0.98409 0.97399 0.95390 1.69640 1.25292 1.15364 1.44866 0.85569 0.78104 0.79367 0.78650 1.20306 1.20127 1.19918 1.22491 0.96037 0.97901 0.88003 1.85269 1.04003 0.97118 1.68708 1.26526 0.96999 1.02436 1.14208 1.20276 1.01706 0.87122 1.03599 0.89568 0.90978 0.88622 0.72495 0.89474 0.88681 0.91382 0.92661 0.88788 0.93187 0.92003 0.77027 0.91974 0.91880 0.95203 0.89852 0.88331 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.81 71.24 0.70 -0.34 16 2 C 0.06 1.40 6.74 41.45 0.28 1.68 16 3 N -0.52 -14.24 10.58 -189.58 -2.01 -16.24 16 4 C 0.23 6.59 8.19 179.21 1.47 8.06 16 5 N -0.61 -15.73 5.31 -313.64 -1.66 -17.40 16 6 C 0.52 15.99 6.69 87.66 0.59 16.58 16 7 O -0.51 -19.39 12.90 -3.03 -0.04 -19.43 16 8 C 0.07 1.98 2.09 44.17 0.09 2.07 16 9 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 10 C -0.14 -2.77 8.86 71.98 0.64 -2.13 16 11 N -0.51 -19.14 4.74 -864.76 -4.10 -23.24 16 12 C 0.06 1.97 5.24 86.77 0.45 2.43 16 13 C -0.13 -5.65 5.67 31.98 0.18 -5.47 16 14 C 0.22 11.06 0.85 -10.36 -0.01 11.05 16 15 O -0.60 -30.99 13.09 -148.98 -1.95 -32.94 16 16 C -0.56 -31.03 8.21 25.60 0.21 -30.82 16 17 H 0.05 2.71 7.53 -2.91 -0.02 2.69 16 18 C 0.03 1.71 5.28 84.65 0.45 2.16 16 19 N -0.91 -48.50 10.69 21.45 0.23 -48.27 16 20 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 C 0.08 3.83 4.88 86.65 0.42 4.25 16 25 S 0.20 5.68 20.22 -56.49 -1.14 4.54 16 26 C -0.28 -6.27 6.58 24.60 0.16 -6.11 16 27 C -0.07 -0.97 9.80 71.23 0.70 -0.27 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 0.96 7.34 -2.39 -0.02 0.94 16 31 H 0.43 8.28 8.30 -92.71 -0.77 7.51 16 32 H 0.09 1.62 6.47 -2.39 -0.02 1.60 16 33 H 0.09 1.26 7.66 -2.39 -0.02 1.24 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.81 7.18 -2.39 -0.02 1.79 16 36 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.05 2.37 8.04 -2.39 -0.02 2.35 16 38 H 0.06 2.92 7.76 -2.39 -0.02 2.90 16 39 H 0.38 20.16 6.98 -74.06 -0.52 19.65 16 40 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.06 3.15 7.63 -2.39 -0.02 3.13 16 42 H 0.03 1.39 7.20 -2.38 -0.02 1.37 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.10 0.94 7.42 -2.39 -0.02 0.93 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -67.13 371.98 -2.57 -69.70 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.25 Total: 35.11 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.33 Total: 3.13 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -7.54 Total: -105.15 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.99 Total: -52.37 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.14 Total: 4.54 kcal Total: -67.13 -2.57 -69.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.787 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds