Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46825 * 2 1 4 4 N 1.31985 * 122.71491 * 89.97549 * 3 2 1 5 5 C 1.29622 * 116.91781 * 180.02562 * 4 3 2 6 6 N 1.38996 * 124.94608 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00301 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.48534 * 110.99830 * 52.60468 * 10 9 7 12 12 C 1.54939 * 103.22817 * 159.71871 * 11 10 9 13 13 C 1.54596 * 102.92012 * 322.58829 * 12 11 10 14 14 O 1.42899 * 110.39201 * 262.99464 * 13 12 11 15 15 C 1.50706 * 110.30946 * 140.87193 * 13 12 11 16 16 H 1.08000 * 119.99519 * 244.28052 * 15 13 12 17 17 C 1.37881 * 119.99819 * 64.28175 * 15 13 12 18 18 N 1.31511 * 119.99952 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 119.99653 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47454 * 59.99744 * 19 17 15 21 21 H 1.48504 * 109.47174 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47340 * 299.99949 * 19 17 15 23 23 C 1.47901 * 111.00170 * 169.99808 * 10 9 7 24 24 S 1.70967 * 110.11042 * 0.26848 * 5 4 3 25 25 C 1.33442 * 122.71543 * 270.00513 * 3 2 1 26 26 C 1.50702 * 125.96927 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47091 * 299.99735 * 1 2 3 29 29 H 1.08999 * 109.47854 * 60.00030 * 1 2 3 30 30 H 1.09001 * 109.47369 * 240.00635 * 2 1 3 31 31 H 1.08990 * 109.47612 * 119.99926 * 2 1 3 32 32 H 0.97005 * 120.00236 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 34 34 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 35 35 H 1.08996 * 110.66891 * 278.15580 * 11 10 9 36 36 H 1.09001 * 110.67193 * 41.28416 * 11 10 9 37 37 H 1.08998 * 110.72475 * 204.22657 * 12 11 10 38 38 H 1.09003 * 110.87498 * 81.01220 * 12 11 10 39 39 H 0.96705 * 114.00043 * 295.76988 * 14 13 12 40 40 H 0.97000 * 119.99459 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.91618 * 333.51273 * 23 10 9 42 42 H 1.09004 * 109.91578 * 94.60372 * 23 10 9 43 43 H 1.09007 * 109.46439 * 90.00880 * 26 25 3 44 44 H 1.08999 * 109.47285 * 210.00584 * 26 25 3 45 45 H 1.08995 * 109.47171 * 330.01165 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2696 2.0936 1.1105 5 6 2.6989 3.3096 0.9796 6 7 3.0003 4.1653 2.0326 7 6 3.4417 5.4137 1.7815 8 8 3.5756 5.7907 0.6365 9 6 3.7690 6.3412 2.9233 10 7 4.2249 7.6320 2.3904 11 6 3.2497 8.1784 1.4123 12 6 3.5945 9.6884 1.3737 13 6 3.9463 10.0004 2.8464 14 8 2.8152 10.5536 3.5221 15 6 5.1126 10.9524 2.9151 16 1 6.0451 10.6328 3.3564 17 6 4.9891 12.2313 2.4147 18 7 3.8536 12.6201 1.8770 19 14 6.4349 13.4109 2.4994 20 1 7.5831 12.8415 1.7492 21 1 6.0474 14.7128 1.8990 22 1 6.8236 13.6167 3.9178 23 6 4.3273 8.6428 3.4652 24 16 2.8329 3.7106 -0.6770 25 6 2.2725 2.1009 -1.1227 26 6 2.0904 1.5843 -2.5267 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.8936 3.8637 2.9484 33 1 4.5572 5.9012 3.5343 34 1 2.8789 6.4944 3.5335 35 1 3.3939 7.7256 0.4314 36 1 2.2283 8.0258 1.7611 37 1 2.7328 10.2727 1.0508 38 1 4.4503 9.8750 0.7248 39 1 2.5295 11.4098 3.1749 40 1 3.7667 13.5199 1.5253 41 1 3.6385 8.3967 4.2733 42 1 5.3482 8.6782 3.8456 43 1 1.0774 1.8021 -2.8653 44 1 2.8071 2.0704 -3.1886 45 1 2.2547 0.5069 -2.5415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -30.007038 kcal Electronic energy + Delta-G solvation = -27036.744049 eV Core-core repulsion = 23181.285932 eV Total energy + Delta-G solvation = -3855.458117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73103 -39.82923 -38.08823 -35.61233 -34.69193 -33.42096 -32.06955 -31.66554 -30.58825 -28.09131 -27.41063 -26.09714 -24.39524 -24.16786 -22.99281 -21.42993 -20.63461 -19.52119 -19.26050 -18.14354 -17.14092 -17.05113 -16.59311 -16.10431 -15.32230 -15.14164 -14.84837 -14.70455 -14.45068 -14.17212 -13.87972 -13.70481 -13.35984 -13.32790 -13.10949 -12.75984 -12.59829 -12.45336 -12.16518 -12.06619 -11.65642 -11.60996 -11.28367 -11.19356 -10.99553 -10.91494 -10.76893 -10.60331 -10.51114 -10.34894 -9.94713 -9.81539 -9.68057 -9.16816 -9.14649 -8.57890 -8.23346 -8.07957 -7.92029 -6.19090 -4.25199 0.65160 1.06561 1.79792 2.15327 2.41131 2.84429 3.26830 3.31298 3.34497 4.23169 4.33115 4.47239 4.53346 4.76447 4.87030 5.04205 5.08188 5.08286 5.15042 5.27188 5.29700 5.33017 5.54107 5.58274 5.63552 5.68915 5.72729 5.85787 5.93076 6.02963 6.11156 6.18865 6.24911 6.31313 6.62140 6.71578 6.89394 7.09859 7.24136 7.45473 7.57859 7.62145 7.68602 7.77265 7.84216 8.14924 8.75650 9.41116 9.51536 10.88702 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.002237 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.836058 B =12513.537030 C =12853.353789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.086 3.914 4 N -0.514 5.514 5 C 0.245 3.755 6 N -0.628 5.628 7 C 0.513 3.487 8 O -0.478 6.478 9 C 0.036 3.964 10 N -0.498 5.498 11 C 0.026 3.974 12 C -0.118 4.118 13 C 0.243 3.757 14 O -0.596 6.596 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.054 3.946 24 S 0.246 5.754 25 C -0.291 4.291 26 C -0.066 4.066 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.422 0.578 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.385 0.615 40 H 0.267 0.733 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 -22.407 -4.335 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.046 4.046 4 N -0.237 5.237 5 C -0.122 4.122 6 N -0.279 5.279 7 C 0.300 3.700 8 O -0.350 6.350 9 C -0.096 4.096 10 N -0.223 5.223 11 C -0.101 4.101 12 C -0.157 4.157 13 C 0.203 3.797 14 O -0.406 6.406 15 C -0.567 4.567 16 H 0.080 0.920 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.073 4.073 24 S 0.498 5.502 25 C -0.413 4.413 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.260 0.740 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.360 -21.780 -5.064 22.782 hybrid contribution -0.437 0.292 0.839 0.990 sum -4.798 -21.489 -4.224 22.419 Atomic orbital electron populations 1.21697 0.94456 1.01709 1.02318 1.20086 0.96070 0.89462 1.03035 1.19605 1.01441 0.97789 0.85771 1.66134 1.20233 1.04619 1.32671 1.23303 1.02266 0.91967 0.94663 1.43027 1.64419 1.12085 1.08403 1.21369 0.75682 0.80589 0.92381 1.90628 1.49223 1.72547 1.22590 1.22188 1.01516 0.92461 0.93385 1.64879 1.44346 1.00019 1.13082 1.23583 0.91871 0.97603 0.97007 1.22997 1.01125 0.91187 1.00419 1.19335 0.84891 0.88595 0.86856 1.86061 1.50091 1.41128 1.63345 1.21641 0.98373 0.97246 1.39434 0.91980 1.25013 0.96247 0.98183 0.93936 1.69607 1.24853 1.19380 1.40148 0.86509 0.82474 0.79745 0.78406 1.20071 1.21240 1.20166 1.22951 1.00990 0.91489 0.91888 1.85107 1.60777 1.08365 0.95999 1.26153 1.13615 1.00751 1.00767 1.20115 1.02177 1.00913 0.89354 0.92162 0.92441 0.92617 0.90319 0.90457 0.73957 0.87216 0.91144 0.88805 0.95552 0.91730 0.91280 0.76356 0.92267 0.94314 0.89856 0.91057 0.91429 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 37.16 0.37 -0.72 16 2 C -0.05 -0.39 6.11 -27.88 -0.17 -0.56 16 3 C 0.09 1.00 5.99 -84.20 -0.50 0.49 16 4 N -0.51 -6.78 10.58 -11.28 -0.12 -6.90 16 5 C 0.24 3.27 8.19 -87.36 -0.72 2.55 16 6 N -0.63 -7.41 5.40 -13.07 -0.07 -7.48 16 7 C 0.51 7.18 7.50 -10.98 -0.08 7.10 16 8 O -0.48 -8.08 10.99 5.55 0.06 -8.02 16 9 C 0.04 0.50 5.52 -4.98 -0.03 0.47 16 10 N -0.50 -9.35 5.26 -231.89 -1.22 -10.57 16 11 C 0.03 0.53 5.30 -1.90 -0.01 0.52 16 12 C -0.12 -2.79 5.50 -24.87 -0.14 -2.93 16 13 C 0.24 5.99 0.99 -90.42 -0.09 5.90 16 14 O -0.60 -15.36 12.93 -35.23 -0.46 -15.82 16 15 C -0.53 -14.09 8.10 -34.44 -0.28 -14.37 16 16 H 0.06 1.64 7.35 -52.49 -0.39 1.25 16 17 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 18 N -0.90 -24.07 10.88 55.43 0.60 -23.47 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.05 1.12 6.16 -2.76 -0.02 1.11 16 24 S 0.25 3.21 20.22 -107.50 -2.17 1.04 16 25 C -0.29 -3.21 6.58 -35.98 -0.24 -3.45 16 26 C -0.07 -0.51 10.09 36.01 0.36 -0.15 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.52 6.70 -51.93 -0.35 0.17 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.42 3.72 8.82 -40.82 -0.36 3.36 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 35 H 0.09 1.90 5.97 -51.93 -0.31 1.59 16 36 H 0.03 0.52 8.02 -51.93 -0.42 0.11 16 37 H 0.06 1.58 8.06 -51.93 -0.42 1.16 16 38 H 0.07 1.74 7.86 -51.93 -0.41 1.33 16 39 H 0.38 10.15 7.05 45.56 0.32 10.47 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.04 0.77 7.39 -51.93 -0.38 0.38 16 42 H 0.08 1.72 7.40 -51.93 -0.38 1.34 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.45 6.74 -51.93 -0.35 0.10 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -30.39 372.77 -10.35 -40.75 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.94 Total: 11.46 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.63 Total: -2.34 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.81 Total: -48.41 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.39 Total: -23.83 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.17 Total: 1.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.39 -10.35 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.740 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds