Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46825 * 2 1 4 4 N 1.31985 * 122.71491 * 89.97549 * 3 2 1 5 5 C 1.29622 * 116.91781 * 180.02562 * 4 3 2 6 6 N 1.38996 * 124.94608 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00301 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.48534 * 110.99830 * 52.60468 * 10 9 7 12 12 C 1.54939 * 103.22817 * 159.71871 * 11 10 9 13 13 C 1.54596 * 102.92012 * 322.58829 * 12 11 10 14 14 O 1.42899 * 110.39201 * 262.99464 * 13 12 11 15 15 C 1.50706 * 110.30946 * 140.87193 * 13 12 11 16 16 H 1.08000 * 119.99519 * 244.28052 * 15 13 12 17 17 C 1.37881 * 119.99819 * 64.28175 * 15 13 12 18 18 N 1.31511 * 119.99952 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 119.99653 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47454 * 59.99744 * 19 17 15 21 21 H 1.48504 * 109.47174 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47340 * 299.99949 * 19 17 15 23 23 C 1.47901 * 111.00170 * 169.99808 * 10 9 7 24 24 S 1.70967 * 110.11042 * 0.26848 * 5 4 3 25 25 C 1.33442 * 122.71543 * 270.00513 * 3 2 1 26 26 C 1.50702 * 125.96927 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47091 * 299.99735 * 1 2 3 29 29 H 1.08999 * 109.47854 * 60.00030 * 1 2 3 30 30 H 1.09001 * 109.47369 * 240.00635 * 2 1 3 31 31 H 1.08990 * 109.47612 * 119.99926 * 2 1 3 32 32 H 0.97005 * 120.00236 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 34 34 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 35 35 H 1.08996 * 110.66891 * 278.15580 * 11 10 9 36 36 H 1.09001 * 110.67193 * 41.28416 * 11 10 9 37 37 H 1.08998 * 110.72475 * 204.22657 * 12 11 10 38 38 H 1.09003 * 110.87498 * 81.01220 * 12 11 10 39 39 H 0.96705 * 114.00043 * 295.76988 * 14 13 12 40 40 H 0.97000 * 119.99459 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.91618 * 333.51273 * 23 10 9 42 42 H 1.09004 * 109.91578 * 94.60372 * 23 10 9 43 43 H 1.09007 * 109.46439 * 90.00880 * 26 25 3 44 44 H 1.08999 * 109.47285 * 210.00584 * 26 25 3 45 45 H 1.08995 * 109.47171 * 330.01165 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2696 2.0936 1.1105 5 6 2.6989 3.3096 0.9796 6 7 3.0003 4.1653 2.0326 7 6 3.4417 5.4137 1.7815 8 8 3.5756 5.7907 0.6365 9 6 3.7690 6.3412 2.9233 10 7 4.2249 7.6320 2.3904 11 6 3.2497 8.1784 1.4123 12 6 3.5945 9.6884 1.3737 13 6 3.9463 10.0004 2.8464 14 8 2.8152 10.5536 3.5221 15 6 5.1126 10.9524 2.9151 16 1 6.0451 10.6328 3.3564 17 6 4.9891 12.2313 2.4147 18 7 3.8536 12.6201 1.8770 19 14 6.4349 13.4109 2.4994 20 1 7.5831 12.8415 1.7492 21 1 6.0474 14.7128 1.8990 22 1 6.8236 13.6167 3.9178 23 6 4.3273 8.6428 3.4652 24 16 2.8329 3.7106 -0.6770 25 6 2.2725 2.1009 -1.1227 26 6 2.0904 1.5843 -2.5267 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.8936 3.8637 2.9484 33 1 4.5572 5.9012 3.5343 34 1 2.8789 6.4944 3.5335 35 1 3.3939 7.7256 0.4314 36 1 2.2283 8.0258 1.7611 37 1 2.7328 10.2727 1.0508 38 1 4.4503 9.8750 0.7248 39 1 2.5295 11.4098 3.1749 40 1 3.7667 13.5199 1.5253 41 1 3.6385 8.3967 4.2733 42 1 5.3482 8.6782 3.8456 43 1 1.0774 1.8021 -2.8653 44 1 2.8071 2.0704 -3.1886 45 1 2.2547 0.5069 -2.5415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -52.364546 kcal Electronic energy + Delta-G solvation = -27037.713544 eV Core-core repulsion = 23181.285932 eV Total energy + Delta-G solvation = -3856.427612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81076 -40.83075 -39.69979 -36.78386 -36.27356 -34.25183 -34.11006 -32.41562 -32.08394 -29.84184 -28.68331 -27.24941 -25.93810 -25.11815 -23.93993 -22.57362 -22.10918 -21.29006 -20.24687 -19.15274 -19.10964 -18.00527 -17.68156 -17.20373 -16.85511 -16.80164 -16.33298 -15.86441 -15.71626 -15.34208 -14.96452 -14.84418 -14.76078 -14.25404 -14.05957 -13.92135 -13.83519 -13.52879 -13.38103 -13.28509 -13.13628 -12.98134 -12.80295 -12.66298 -12.44700 -12.35243 -12.15620 -11.91037 -11.89606 -11.79697 -11.64723 -11.13567 -10.83767 -10.76259 -10.58074 -10.12540 -10.04977 -9.41626 -9.11464 -8.20076 -6.33288 -0.29630 0.12812 0.88801 1.14151 1.39987 1.43387 1.44093 1.51580 1.90316 2.40604 2.97033 3.10791 3.33463 3.58796 3.88874 4.07125 4.16072 4.21340 4.21698 4.31065 4.40815 4.41448 4.46431 4.47622 4.51993 4.62162 4.72890 4.77244 4.91654 4.95612 5.02064 5.10225 5.11815 5.16219 5.28498 5.33113 5.40053 5.47535 5.60483 5.75338 5.78034 5.90542 6.10142 6.16339 6.70436 6.71958 6.76192 7.36074 7.44644 8.85904 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.002237 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.836058 B =12513.537030 C =12853.353789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.067 3.933 4 N -0.521 5.521 5 C 0.229 3.771 6 N -0.613 5.613 7 C 0.517 3.483 8 O -0.512 6.512 9 C 0.036 3.964 10 N -0.507 5.507 11 C 0.044 3.956 12 C -0.112 4.112 13 C 0.226 3.774 14 O -0.601 6.601 15 C -0.552 4.552 16 H 0.058 0.942 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.064 3.936 24 S 0.205 5.795 25 C -0.277 4.277 26 C -0.069 4.069 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.436 0.564 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.378 0.622 40 H 0.268 0.732 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -24.617 -4.150 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.064 4.064 4 N -0.244 5.244 5 C -0.138 4.138 6 N -0.266 5.266 7 C 0.304 3.696 8 O -0.386 6.386 9 C -0.095 4.095 10 N -0.232 5.232 11 C -0.083 4.083 12 C -0.151 4.151 13 C 0.186 3.814 14 O -0.410 6.410 15 C -0.590 4.590 16 H 0.077 0.923 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.064 4.064 24 S 0.456 5.544 25 C -0.399 4.399 26 C -0.128 4.128 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.277 0.723 33 H 0.162 0.838 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.228 0.772 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.318 -24.040 -4.847 24.901 hybrid contribution -0.495 0.880 0.747 1.256 sum -4.813 -23.160 -4.100 24.007 Atomic orbital electron populations 1.21672 0.93776 1.02838 1.01488 1.20214 0.96548 0.87592 1.04101 1.20172 1.01691 0.99127 0.85436 1.66178 1.20016 1.04553 1.33645 1.23421 1.03287 0.92306 0.94790 1.42765 1.63604 1.11263 1.08930 1.21327 0.75377 0.81068 0.91846 1.90629 1.50788 1.73414 1.23743 1.22323 1.03617 0.89955 0.93595 1.64755 1.44583 1.01374 1.12510 1.23334 0.92322 0.94952 0.97732 1.22794 0.99168 0.93665 0.99522 1.19611 0.84016 0.90156 0.87631 1.86051 1.50583 1.40742 1.63622 1.21950 0.99004 0.98233 1.39794 0.92341 1.25724 0.98545 0.99635 0.93642 1.69700 1.26104 1.19613 1.40313 0.85585 0.79600 0.77826 0.78435 1.19950 1.20841 1.19681 1.22758 1.01197 0.90035 0.92390 1.85217 1.61639 1.10627 0.96935 1.26498 1.12064 0.99051 1.02299 1.20290 1.03019 1.02177 0.87289 0.90055 0.94220 0.92475 0.88048 0.90591 0.72289 0.83827 0.89068 0.88905 0.95185 0.93656 0.93813 0.77155 0.92238 0.93081 0.89782 0.89865 0.90991 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.04 -0.65 6.11 29.85 0.18 -0.47 16 3 C 0.07 1.44 5.99 41.45 0.25 1.69 16 4 N -0.52 -13.18 10.58 -189.59 -2.01 -15.18 16 5 C 0.23 5.94 8.19 179.21 1.47 7.41 16 6 N -0.61 -13.66 5.40 -313.65 -1.69 -15.35 16 7 C 0.52 13.81 7.50 87.66 0.66 14.47 16 8 O -0.51 -17.17 10.99 -3.05 -0.03 -17.20 16 9 C 0.04 0.90 5.52 85.56 0.47 1.38 16 10 N -0.51 -18.47 5.26 -887.57 -4.67 -23.14 16 11 C 0.04 1.77 5.30 86.65 0.46 2.23 16 12 C -0.11 -5.45 5.50 31.80 0.17 -5.28 16 13 C 0.23 11.21 0.99 -10.66 -0.01 11.20 16 14 O -0.60 -31.30 12.93 -148.98 -1.93 -33.22 16 15 C -0.55 -29.73 8.10 25.60 0.21 -29.52 16 16 H 0.06 3.11 7.35 -2.91 -0.02 3.09 16 17 C 0.02 1.29 5.26 84.66 0.45 1.74 16 18 N -0.92 -49.92 10.88 21.45 0.23 -49.68 16 19 Si 0.96 42.74 29.54 68.60 2.03 44.76 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 C 0.06 2.59 6.16 86.44 0.53 3.12 16 24 S 0.20 5.31 20.22 -56.49 -1.14 4.17 16 25 C -0.28 -5.73 6.58 24.60 0.16 -5.56 16 26 C -0.07 -0.90 10.09 71.24 0.72 -0.18 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 1.00 6.70 -2.39 -0.02 0.98 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.44 6.86 8.82 -92.70 -0.82 6.04 16 33 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.09 2.01 7.81 -2.39 -0.02 1.99 16 35 H 0.09 3.82 5.97 -2.39 -0.01 3.80 16 36 H 0.03 1.18 8.02 -2.39 -0.02 1.16 16 37 H 0.04 2.30 8.06 -2.39 -0.02 2.28 16 38 H 0.04 2.28 7.86 -2.39 -0.02 2.27 16 39 H 0.38 20.45 7.05 -74.05 -0.52 19.93 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.05 1.93 7.39 -2.39 -0.02 1.91 16 42 H 0.08 3.39 7.40 -2.38 -0.02 3.37 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 0.85 6.74 -2.39 -0.02 0.83 16 Total: -1.00 -66.30 372.77 -3.09 -69.39 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.30 Total: 34.33 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.43 Total: 1.13 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -8.14 Total: -103.35 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.96 Total: -50.42 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.14 Total: 4.17 kcal Total: -66.30 -3.09 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.024 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds