Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47074 * 2 1 4 4 N 1.30500 * 125.65198 * 270.27039 * 3 2 1 5 5 C 1.34122 * 109.25830 * 180.14416 * 4 3 2 6 6 S 1.76202 * 125.99031 * 179.88250 * 5 4 3 7 7 O 1.42099 * 106.40432 * 156.15167 * 6 5 4 8 8 O 1.42097 * 106.39952 * 23.23081 * 6 5 4 9 9 N 1.65604 * 107.21710 * 269.69331 * 6 5 4 10 10 C 1.36939 * 119.99955 * 89.99875 * 9 6 5 11 11 H 1.07996 * 119.99955 * 231.30003 * 10 9 6 12 12 C 1.38816 * 120.00091 * 51.30433 * 10 9 6 13 13 N 1.31618 * 119.99701 * 23.86298 * 12 10 9 14 14 Si 1.86795 * 119.99945 * 203.86776 * 12 10 9 15 15 H 1.48494 * 109.47040 * 270.00054 * 14 12 10 16 16 H 1.48501 * 109.47004 * 29.99751 * 14 12 10 17 17 H 1.48503 * 109.47079 * 149.99584 * 14 12 10 18 18 C 1.46494 * 119.99979 * 269.99859 * 9 6 5 19 19 C 1.52996 * 117.50108 * 183.42254 * 18 9 6 20 20 C 1.53002 * 60.00155 * 252.50641 * 19 18 9 21 21 C 1.34673 * 108.02230 * 359.62198 * 5 4 3 22 22 N 1.35041 * 125.65164 * 89.99560 * 3 2 1 23 23 C 1.46500 * 126.39807 * 0.02562 * 22 3 2 24 24 C 1.52998 * 109.47594 * 84.97520 * 23 22 3 25 25 C 1.53006 * 117.49863 * 243.62887 * 24 23 22 26 26 C 1.52993 * 117.50420 * 175.00198 * 24 23 22 27 27 H 1.08997 * 109.47372 * 299.99728 * 1 2 3 28 28 H 1.08993 * 109.46946 * 60.00733 * 1 2 3 29 29 H 1.09009 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47310 * 239.99721 * 2 1 3 31 31 H 1.09001 * 109.47118 * 119.99876 * 2 1 3 32 32 H 0.97003 * 119.99701 * 174.94445 * 13 12 10 33 33 H 1.09007 * 115.55095 * 329.12733 * 18 9 6 34 34 H 1.09003 * 117.49923 * 359.97438 * 19 18 9 35 35 H 1.09003 * 117.50057 * 145.01654 * 19 18 9 36 36 H 1.08992 * 117.50000 * 252.50780 * 20 19 18 37 37 H 1.08997 * 117.51251 * 107.47369 * 20 19 18 38 38 H 1.07998 * 126.59090 * 180.20345 * 21 5 4 39 39 H 1.09003 * 109.47184 * 204.97435 * 23 22 3 40 40 H 1.09007 * 109.47102 * 324.97019 * 23 22 3 41 41 H 1.09004 * 115.54708 * 29.32523 * 24 23 22 42 42 H 1.09001 * 117.49975 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.49849 * 145.01918 * 25 24 23 44 44 H 1.08997 * 117.50312 * 214.97932 * 26 24 23 45 45 H 1.08998 * 117.49916 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2811 2.1396 -1.0604 5 6 2.7147 3.3510 -0.6819 6 16 3.1791 4.6672 -1.7574 7 8 3.0252 5.8675 -1.0124 8 8 2.5177 4.4287 -2.9922 9 7 4.8000 4.5071 -2.0565 10 6 5.2293 3.7582 -3.1196 11 1 5.9737 2.9896 -2.9731 12 6 4.7079 3.9871 -4.3856 13 7 4.1909 5.1607 -4.6820 14 14 4.7397 2.6296 -5.6683 15 1 6.0027 2.7121 -6.4449 16 1 4.6588 1.3092 -4.9936 17 1 3.5830 2.7883 -6.5859 18 6 5.7745 5.1665 -1.1839 19 6 7.2530 5.0470 -1.5588 20 6 6.7030 4.2727 -0.3592 21 6 2.7274 3.3872 0.6643 22 7 2.2946 2.1629 1.0973 23 6 2.1445 1.7371 2.4910 24 6 3.4071 0.9970 2.9371 25 6 3.2644 -0.4785 3.3159 26 6 3.4958 0.5719 4.4041 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8935 5.3451 -5.5867 33 1 5.4437 6.1016 -0.7317 34 1 7.5007 4.4773 -2.4545 35 1 7.8952 5.9035 -1.3534 36 1 6.9832 4.6198 0.6352 37 1 6.5884 3.1941 -0.4658 38 1 3.0227 4.2215 1.2832 39 1 1.9932 2.6116 3.1239 40 1 1.2843 1.0730 2.5774 41 1 4.3302 1.3037 2.4452 42 1 2.2710 -0.9219 3.2478 43 1 4.0938 -1.1429 3.0733 44 1 4.4772 0.5986 4.8774 45 1 2.6548 0.8198 5.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595305435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = 45.745486 kcal Electronic energy + Delta-G solvation = -28754.419874 eV Core-core repulsion = 24902.246632 eV Total energy + Delta-G solvation = -3852.173242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75034 -37.85571 -37.05236 -35.44348 -33.94727 -33.70355 -33.30010 -33.10266 -30.47181 -28.50754 -27.19123 -24.78042 -23.75244 -22.78541 -21.74657 -21.52686 -21.08480 -20.43312 -19.50014 -18.68027 -17.63382 -16.36599 -15.88060 -15.75069 -15.39240 -15.09123 -14.87767 -14.44583 -14.28072 -14.03769 -13.98390 -13.74252 -13.40027 -13.13952 -12.95724 -12.42370 -12.22448 -11.91658 -11.90661 -11.56600 -11.54647 -11.29312 -11.13088 -10.96718 -10.88895 -10.76229 -10.54112 -10.45758 -10.36024 -10.21440 -10.13033 -9.98293 -9.86563 -9.38975 -9.25554 -9.21275 -8.52449 -8.14487 -7.39262 -6.35933 -4.00316 2.04097 2.27289 2.86860 3.32100 3.33096 3.40947 3.44231 3.47009 4.28505 4.29005 4.42345 4.52690 4.63575 4.72018 4.76671 4.83040 4.90977 5.04386 5.12704 5.15167 5.25299 5.25851 5.30756 5.47809 5.51198 5.55142 5.72233 5.72998 5.76405 5.78838 5.82500 5.86057 5.91092 6.01738 6.17724 6.32461 6.42450 6.48989 6.66092 6.81489 6.90267 7.05135 7.47357 7.56477 7.66227 8.36178 8.47704 9.07460 9.48706 10.70514 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.004666 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.137667 B = 5999.633849 C = 6757.193907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.035 4.035 3 C 0.188 3.812 4 N -0.404 5.404 5 C -0.523 4.523 6 S 2.599 3.401 7 O -1.018 7.018 8 O -0.933 6.933 9 N -0.786 5.786 10 C -0.283 4.283 11 H 0.077 0.923 12 C 0.069 3.931 13 N -0.786 5.786 14 Si 0.923 3.077 15 H -0.280 1.280 16 H -0.264 1.264 17 H -0.278 1.278 18 C 0.098 3.902 19 C -0.161 4.161 20 C -0.216 4.216 21 C 0.030 3.970 22 N -0.455 5.455 23 C 0.134 3.866 24 C -0.175 4.175 25 C -0.175 4.175 26 C -0.169 4.169 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.278 0.722 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.180 0.820 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -9.786 15.351 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 C -0.076 4.076 4 N -0.120 5.120 5 C -0.727 4.727 6 S 2.694 3.306 7 O -1.007 7.007 8 O -0.921 6.921 9 N -0.609 5.609 10 C -0.429 4.429 11 H 0.094 0.906 12 C -0.149 4.149 13 N -0.421 5.421 14 Si 0.748 3.252 15 H -0.206 1.206 16 H -0.188 1.188 17 H -0.203 1.203 18 C -0.012 4.012 19 C -0.200 4.200 20 C -0.256 4.256 21 C -0.107 4.107 22 N -0.138 5.138 23 C 0.011 3.989 24 C -0.194 4.194 25 C -0.212 4.212 26 C -0.207 4.207 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.197 0.803 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.770 -9.333 14.451 17.294 hybrid contribution 0.126 -0.882 0.890 1.259 sum -1.644 -10.215 15.341 18.504 Atomic orbital electron populations 1.21753 0.94392 1.01824 1.02540 1.19905 0.95991 0.87671 1.03828 1.23560 1.05479 0.96769 0.81771 1.70355 1.13168 1.01723 1.26786 1.35414 1.15637 1.14149 1.07452 1.09185 0.75184 0.73467 0.72717 1.93299 1.87198 1.45467 1.74732 1.93417 1.73918 1.84750 1.39991 1.52320 1.19305 1.58143 1.31095 1.18763 1.25177 1.15018 0.83974 0.90577 1.25653 0.94687 0.95922 0.98607 1.69814 1.30913 1.20381 1.20967 0.86021 0.77425 0.81861 0.79859 1.20583 1.18819 1.20344 1.21398 0.87686 0.95789 0.96294 1.23031 0.95695 1.01967 0.99313 1.23333 1.08048 0.99154 0.95075 1.22572 1.03504 0.88908 0.95679 1.45529 1.49629 1.11882 1.06726 1.21408 0.97028 1.00333 0.80157 1.22687 0.99828 0.97859 0.99041 1.23091 1.03374 0.91542 1.03183 1.22961 1.03538 1.03328 0.90828 0.93279 0.91549 0.91857 0.88712 0.90680 0.91156 0.86607 0.87344 0.89841 0.90023 0.89329 0.80263 0.88652 0.89089 0.86832 0.88481 0.88406 0.88303 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.03 -0.46 6.09 -27.89 -0.17 -0.63 16 3 C 0.19 3.38 7.16 -155.42 -1.11 2.27 16 4 N -0.40 -9.35 11.25 -10.02 -0.11 -9.46 16 5 C -0.52 -12.27 7.13 -17.81 -0.13 -12.40 16 6 S 2.60 69.84 5.60 -107.50 -0.60 69.23 16 7 O -1.02 -27.91 16.67 -57.17 -0.95 -28.87 16 8 O -0.93 -28.51 14.28 -57.17 -0.82 -29.32 16 9 N -0.79 -20.02 3.02 -53.43 -0.16 -20.18 16 10 C -0.28 -7.47 7.72 -15.06 -0.12 -7.58 16 11 H 0.08 1.91 7.64 -52.49 -0.40 1.51 16 12 C 0.07 1.89 4.04 -17.43 -0.07 1.82 16 13 N -0.79 -22.72 11.75 55.49 0.65 -22.06 16 14 Si 0.92 21.59 29.62 -169.99 -5.03 16.56 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.10 2.11 6.32 -67.93 -0.43 1.68 16 19 C -0.16 -3.01 9.82 -26.73 -0.26 -3.27 16 20 C -0.22 -3.86 10.35 -26.73 -0.28 -4.14 16 21 C 0.03 0.57 11.31 -16.56 -0.19 0.38 16 22 N -0.45 -7.22 2.75 -113.90 -0.31 -7.53 16 23 C 0.13 1.41 5.96 -4.04 -0.02 1.38 16 24 C -0.18 -1.67 6.01 -90.62 -0.54 -2.22 16 25 C -0.17 -1.33 9.68 -26.73 -0.26 -1.59 16 26 C -0.17 -1.19 10.25 -26.73 -0.27 -1.47 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 0.77 7.32 -51.93 -0.38 0.39 16 32 H 0.28 7.56 8.32 -40.82 -0.34 7.22 16 33 H 0.12 2.46 7.46 -51.92 -0.39 2.07 16 34 H 0.11 2.16 6.89 -51.93 -0.36 1.80 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.18 2.98 8.06 -52.49 -0.42 2.56 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.79 7.65 -51.92 -0.40 0.39 16 41 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -35.86 387.07 -11.97 -47.83 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.97 Total: 5.03 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -3.49 Total: -27.05 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.06 Total: -59.24 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -1.77 Total: -58.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 16 Polarization: 69.84 SS G_CDS: -0.60 Total: 69.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.86 -11.97 -47.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.574 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds