Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47074 * 2 1 4 4 N 1.30500 * 125.65198 * 270.27039 * 3 2 1 5 5 C 1.34122 * 109.25830 * 180.14416 * 4 3 2 6 6 S 1.76202 * 125.99031 * 179.88250 * 5 4 3 7 7 O 1.42099 * 106.40432 * 156.15167 * 6 5 4 8 8 O 1.42097 * 106.39952 * 23.23081 * 6 5 4 9 9 N 1.65604 * 107.21710 * 269.69331 * 6 5 4 10 10 C 1.36939 * 119.99955 * 89.99875 * 9 6 5 11 11 H 1.07996 * 119.99955 * 231.30003 * 10 9 6 12 12 C 1.38816 * 120.00091 * 51.30433 * 10 9 6 13 13 N 1.31618 * 119.99701 * 23.86298 * 12 10 9 14 14 Si 1.86795 * 119.99945 * 203.86776 * 12 10 9 15 15 H 1.48494 * 109.47040 * 270.00054 * 14 12 10 16 16 H 1.48501 * 109.47004 * 29.99751 * 14 12 10 17 17 H 1.48503 * 109.47079 * 149.99584 * 14 12 10 18 18 C 1.46494 * 119.99979 * 269.99859 * 9 6 5 19 19 C 1.52996 * 117.50108 * 183.42254 * 18 9 6 20 20 C 1.53002 * 60.00155 * 252.50641 * 19 18 9 21 21 C 1.34673 * 108.02230 * 359.62198 * 5 4 3 22 22 N 1.35041 * 125.65164 * 89.99560 * 3 2 1 23 23 C 1.46500 * 126.39807 * 0.02562 * 22 3 2 24 24 C 1.52998 * 109.47594 * 84.97520 * 23 22 3 25 25 C 1.53006 * 117.49863 * 243.62887 * 24 23 22 26 26 C 1.52993 * 117.50420 * 175.00198 * 24 23 22 27 27 H 1.08997 * 109.47372 * 299.99728 * 1 2 3 28 28 H 1.08993 * 109.46946 * 60.00733 * 1 2 3 29 29 H 1.09009 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47310 * 239.99721 * 2 1 3 31 31 H 1.09001 * 109.47118 * 119.99876 * 2 1 3 32 32 H 0.97003 * 119.99701 * 174.94445 * 13 12 10 33 33 H 1.09007 * 115.55095 * 329.12733 * 18 9 6 34 34 H 1.09003 * 117.49923 * 359.97438 * 19 18 9 35 35 H 1.09003 * 117.50057 * 145.01654 * 19 18 9 36 36 H 1.08992 * 117.50000 * 252.50780 * 20 19 18 37 37 H 1.08997 * 117.51251 * 107.47369 * 20 19 18 38 38 H 1.07998 * 126.59090 * 180.20345 * 21 5 4 39 39 H 1.09003 * 109.47184 * 204.97435 * 23 22 3 40 40 H 1.09007 * 109.47102 * 324.97019 * 23 22 3 41 41 H 1.09004 * 115.54708 * 29.32523 * 24 23 22 42 42 H 1.09001 * 117.49975 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.49849 * 145.01918 * 25 24 23 44 44 H 1.08997 * 117.50312 * 214.97932 * 26 24 23 45 45 H 1.08998 * 117.49916 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2811 2.1396 -1.0604 5 6 2.7147 3.3510 -0.6819 6 16 3.1791 4.6672 -1.7574 7 8 3.0252 5.8675 -1.0124 8 8 2.5177 4.4287 -2.9922 9 7 4.8000 4.5071 -2.0565 10 6 5.2293 3.7582 -3.1196 11 1 5.9737 2.9896 -2.9731 12 6 4.7079 3.9871 -4.3856 13 7 4.1909 5.1607 -4.6820 14 14 4.7397 2.6296 -5.6683 15 1 6.0027 2.7121 -6.4449 16 1 4.6588 1.3092 -4.9936 17 1 3.5830 2.7883 -6.5859 18 6 5.7745 5.1665 -1.1839 19 6 7.2530 5.0470 -1.5588 20 6 6.7030 4.2727 -0.3592 21 6 2.7274 3.3872 0.6643 22 7 2.2946 2.1629 1.0973 23 6 2.1445 1.7371 2.4910 24 6 3.4071 0.9970 2.9371 25 6 3.2644 -0.4785 3.3159 26 6 3.4958 0.5719 4.4041 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8935 5.3451 -5.5867 33 1 5.4437 6.1016 -0.7317 34 1 7.5007 4.4773 -2.4545 35 1 7.8952 5.9035 -1.3534 36 1 6.9832 4.6198 0.6352 37 1 6.5884 3.1941 -0.4658 38 1 3.0227 4.2215 1.2832 39 1 1.9932 2.6116 3.1239 40 1 1.2843 1.0730 2.5774 41 1 4.3302 1.3037 2.4452 42 1 2.2710 -0.9219 3.2478 43 1 4.0938 -1.1429 3.0733 44 1 4.4772 0.5986 4.8774 45 1 2.6548 0.8198 5.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595305435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = 22.214033 kcal Electronic energy + Delta-G solvation = -28755.440274 eV Core-core repulsion = 24902.246632 eV Total energy + Delta-G solvation = -3853.193642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.16332 -38.74610 -38.55991 -37.58676 -36.11103 -35.05737 -34.80658 -34.49305 -32.40984 -29.90002 -28.22480 -26.77602 -24.87072 -23.43023 -23.09893 -22.96316 -22.17757 -22.00729 -20.71421 -20.65388 -19.14859 -18.16494 -17.67098 -17.09719 -16.75223 -16.67281 -16.17944 -16.02007 -15.61156 -15.39280 -15.36193 -15.07953 -14.89657 -14.46871 -14.08861 -13.92719 -13.54066 -13.37809 -13.12808 -12.89987 -12.80479 -12.60600 -12.53459 -12.44641 -12.39596 -12.27499 -12.14333 -12.10266 -12.08835 -11.97814 -11.59668 -11.46782 -11.14751 -10.95990 -10.80775 -10.67294 -10.50176 -9.67801 -9.28006 -8.38707 -6.07262 0.12317 0.75494 1.42731 1.53714 1.59788 1.68769 1.77898 2.36110 2.78725 2.89847 3.06784 3.22261 3.40450 3.53326 3.55949 3.68506 3.76749 3.96732 4.04744 4.08683 4.16318 4.22516 4.27273 4.30315 4.34160 4.40187 4.51723 4.57493 4.65706 4.77520 4.89369 4.91802 4.93589 4.97359 5.00593 5.13590 5.15861 5.23679 5.25928 5.26650 5.41771 5.49646 5.54538 5.85739 6.21411 6.30817 6.98739 7.08021 7.49476 8.68183 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.004666 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.137667 B = 5999.633849 C = 6757.193907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C 0.199 3.801 4 N -0.466 5.466 5 C -0.568 4.568 6 S 2.611 3.389 7 O -1.037 7.037 8 O -0.984 6.984 9 N -0.799 5.799 10 C -0.290 4.290 11 H 0.083 0.917 12 C 0.025 3.975 13 N -0.832 5.832 14 Si 0.972 3.028 15 H -0.250 1.250 16 H -0.263 1.263 17 H -0.290 1.290 18 C 0.052 3.948 19 C -0.150 4.150 20 C -0.183 4.183 21 C 0.046 3.954 22 N -0.441 5.441 23 C 0.126 3.874 24 C -0.195 4.195 25 C -0.170 4.170 26 C -0.151 4.151 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.276 0.724 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.202 0.798 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -12.351 18.909 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.067 4.067 4 N -0.183 5.183 5 C -0.775 4.775 6 S 2.711 3.289 7 O -1.026 7.026 8 O -0.973 6.973 9 N -0.623 5.623 10 C -0.435 4.435 11 H 0.101 0.899 12 C -0.189 4.189 13 N -0.468 5.468 14 Si 0.794 3.206 15 H -0.174 1.174 16 H -0.187 1.187 17 H -0.216 1.216 18 C -0.056 4.056 19 C -0.189 4.189 20 C -0.222 4.222 21 C -0.094 4.094 22 N -0.122 5.122 23 C 0.005 3.995 24 C -0.214 4.214 25 C -0.207 4.207 26 C -0.188 4.188 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.219 0.781 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.244 -11.873 18.001 21.600 hybrid contribution -0.066 -0.170 0.048 0.189 sum -1.310 -12.043 18.049 21.738 Atomic orbital electron populations 1.21733 0.92838 1.03773 1.01654 1.20178 0.97182 0.84760 1.05278 1.24363 1.03139 0.97988 0.81222 1.70224 1.15809 1.02361 1.29956 1.34468 1.19913 1.14331 1.08816 1.07888 0.75323 0.73539 0.72137 1.93251 1.87657 1.46858 1.74881 1.93347 1.75263 1.85741 1.42901 1.52183 1.19167 1.58892 1.32010 1.18954 1.25211 1.15142 0.84230 0.89939 1.26500 0.94322 0.97399 1.00669 1.69897 1.33394 1.22301 1.21242 0.85283 0.78140 0.79275 0.77853 1.17405 1.18747 1.21622 1.21664 0.88509 0.97013 0.98401 1.23105 0.93673 1.02928 0.99237 1.23327 1.04429 0.98056 0.96429 1.22787 1.01639 0.90555 0.94421 1.45766 1.47476 1.10238 1.08681 1.21906 0.98680 1.01933 0.76950 1.22492 0.98117 0.99575 1.01250 1.23226 1.04375 0.90446 1.02676 1.23065 1.04561 1.01567 0.89592 0.92021 0.94604 0.88478 0.89448 0.86983 0.91452 0.86948 0.88930 0.86692 0.86277 0.90285 0.78137 0.86815 0.86305 0.89523 0.86677 0.88579 0.87968 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.89 71.98 0.71 -2.13 16 2 C -0.04 -0.83 6.09 29.85 0.18 -0.65 16 3 C 0.20 6.93 7.16 138.13 0.99 7.92 16 4 N -0.47 -22.10 11.25 -185.63 -2.09 -24.18 16 5 C -0.57 -27.35 7.13 83.53 0.60 -26.75 16 6 S 2.61 147.08 5.60 -56.49 -0.32 146.77 16 7 O -1.04 -59.30 16.67 -128.00 -2.13 -61.44 16 8 O -0.98 -63.94 14.28 -128.00 -1.83 -65.77 16 9 N -0.80 -42.19 3.02 -322.94 -0.97 -43.17 16 10 C -0.29 -15.87 7.72 84.03 0.65 -15.22 16 11 H 0.08 4.26 7.64 -2.91 -0.02 4.24 16 12 C 0.02 1.39 4.04 84.86 0.34 1.74 16 13 N -0.83 -50.71 11.75 21.65 0.25 -50.46 16 14 Si 0.97 45.57 29.62 68.60 2.03 47.60 16 15 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 16 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 C 0.05 2.29 6.32 44.99 0.28 2.57 16 19 C -0.15 -5.47 9.82 30.59 0.30 -5.17 16 20 C -0.18 -6.23 10.35 30.60 0.32 -5.92 16 21 C 0.05 1.73 11.31 83.09 0.94 2.67 16 22 N -0.44 -13.13 2.75 -514.28 -1.41 -14.54 16 23 C 0.13 2.16 5.96 86.38 0.51 2.68 16 24 C -0.20 -3.06 6.01 -10.79 -0.06 -3.13 16 25 C -0.17 -1.87 9.68 30.60 0.30 -1.57 16 26 C -0.15 -1.48 10.25 30.59 0.31 -1.17 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.11 1.81 7.32 -2.39 -0.02 1.79 16 32 H 0.28 15.93 8.32 -92.71 -0.77 15.16 16 33 H 0.11 4.88 7.46 -2.38 -0.02 4.86 16 34 H 0.09 3.68 6.89 -2.39 -0.02 3.66 16 35 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.20 6.45 8.06 -2.91 -0.02 6.42 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.12 1.43 7.65 -2.38 -0.02 1.41 16 41 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.11 0.87 8.03 -2.39 -0.02 0.85 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -85.23 387.07 0.88 -84.35 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.98 Total: 24.98 kcal Atomic # 6 Polarization: -50.51 SS G_CDS: 6.37 Total: -44.13 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -4.22 Total: -132.35 kcal Atomic # 8 Polarization: -123.24 SS G_CDS: -3.96 Total: -127.21 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 147.08 SS G_CDS: -0.32 Total: 146.77 kcal Total: -85.23 0.88 -84.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.560 kcal (2) G-P(sol) polarization free energy of solvation -85.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds