Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32561 * 121.64521 * 2 1 4 4 S 1.77231 * 105.31794 * 180.02562 * 3 2 1 5 5 C 1.72209 * 94.84622 * 0.02562 * 4 3 2 6 6 O 1.21832 * 127.05393 * 180.02562 * 5 4 3 7 7 N 1.34245 * 105.88553 * 0.02562 * 5 4 3 8 8 C 1.46491 * 121.37722 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47602 * 89.97271 * 8 7 5 10 10 C 1.50703 * 109.47428 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99941 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00034 * 179.97438 * 10 9 8 13 13 C 1.47085 * 120.88295 * 359.72330 * 12 10 9 14 14 C 1.53696 * 108.27688 * 128.75549 * 13 12 10 15 15 N 1.46893 * 109.25641 * 54.08619 * 14 13 12 16 16 C 1.46903 * 110.99990 * 172.61024 * 15 14 13 17 17 C 1.50701 * 109.46804 * 294.29948 * 16 15 14 18 18 H 1.08000 * 120.00268 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99631 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00678 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99851 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47185 * 89.99705 * 21 19 17 23 23 H 1.48494 * 109.47363 * 209.99935 * 21 19 17 24 24 H 1.48499 * 109.47089 * 330.00078 * 21 19 17 25 25 C 1.46904 * 111.26649 * 296.75173 * 15 14 13 26 26 C 1.47075 * 120.88467 * 180.02562 * 12 10 9 27 27 H 1.09001 * 109.46386 * 269.97918 * 1 2 3 28 28 H 1.09001 * 109.46975 * 29.96728 * 1 2 3 29 29 H 1.08993 * 109.47321 * 149.97328 * 1 2 3 30 30 H 1.08004 * 127.34488 * 0.02675 * 3 2 1 31 31 H 1.09004 * 109.47176 * 209.97056 * 8 7 5 32 32 H 1.09002 * 109.47337 * 329.96812 * 8 7 5 33 33 H 1.09008 * 109.47313 * 299.99733 * 9 8 7 34 34 H 1.09002 * 109.47149 * 59.99426 * 9 8 7 35 35 H 1.09001 * 109.62832 * 248.52849 * 13 12 10 36 36 H 1.09000 * 109.62442 * 9.10441 * 13 12 10 37 37 H 1.08998 * 109.64649 * 294.08083 * 14 13 12 38 38 H 1.09001 * 109.41993 * 173.95015 * 14 13 12 39 39 H 1.08999 * 109.47232 * 54.29855 * 16 15 14 40 40 H 1.08997 * 109.47205 * 174.30065 * 16 15 14 41 41 H 0.96999 * 120.00350 * 180.02562 * 20 19 17 42 42 H 1.08989 * 109.49703 * 303.14702 * 25 15 14 43 43 H 1.09001 * 109.48959 * 183.06510 * 25 15 14 44 44 H 1.09009 * 109.62637 * 350.89843 * 26 12 10 45 45 H 1.09002 * 109.63006 * 111.47216 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0008 5 6 3.5606 -1.0574 -0.0018 6 8 4.3674 -1.9703 -0.0022 7 7 2.2222 -1.1604 -0.0021 8 6 1.5577 -2.4660 -0.0024 9 6 1.3266 -2.9211 1.4399 10 6 0.6425 -4.2639 1.4395 11 8 0.3674 -4.8040 0.3891 12 7 0.3375 -4.8651 2.6065 13 6 0.6687 -4.2310 3.8917 14 6 -0.5986 -4.2128 4.7610 15 7 -1.1364 -5.5760 4.8621 16 6 -2.2449 -5.6346 5.8243 17 6 -1.7247 -5.3430 7.2083 18 1 -0.6755 -5.1353 7.3581 19 6 -2.5880 -5.3423 8.2832 20 7 -3.8655 -5.5957 8.1009 21 14 -1.9431 -4.9815 9.9989 22 1 -2.0149 -3.5209 10.2577 23 1 -2.7691 -5.7028 11.0001 24 1 -0.5324 -5.4337 10.1027 25 6 -1.5528 -6.0834 3.5479 26 6 -0.3296 -6.1757 2.6289 27 1 -0.3632 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8897 -0.5142 30 1 1.8153 2.1367 0.0004 31 1 0.5996 -2.3860 -0.5160 32 1 2.1859 -3.1933 -0.5167 33 1 2.2848 -3.0013 1.9536 34 1 0.6984 -2.1938 1.9542 35 1 1.4509 -4.8027 4.3912 36 1 1.0106 -3.2105 3.7190 37 1 -1.3447 -3.5602 4.3076 38 1 -0.3500 -3.8451 5.7565 39 1 -2.9985 -4.8943 5.5559 40 1 -2.6900 -6.6294 5.8056 41 1 -4.4730 -5.5948 8.8572 42 1 -2.2855 -5.4048 3.1114 43 1 -1.9961 -7.0724 3.6636 44 1 -0.6480 -6.4417 1.6208 45 1 0.3587 -6.9305 3.0095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -26.221700 kcal Electronic energy + Delta-G solvation = -27255.232310 eV Core-core repulsion = 23399.938337 eV Total energy + Delta-G solvation = -3855.293973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42024 -40.04422 -37.90308 -37.64713 -34.52262 -33.78892 -32.51434 -31.72389 -30.78505 -28.83766 -28.04602 -25.88611 -24.96909 -23.62424 -23.19522 -22.02402 -20.83082 -20.43449 -18.78514 -18.39676 -17.74494 -16.69481 -16.65934 -16.44066 -15.87110 -15.65549 -15.26444 -14.84568 -14.65065 -14.52512 -14.17911 -14.09164 -14.00903 -13.81931 -13.67804 -13.50698 -13.08738 -12.76683 -12.62034 -12.32549 -11.99791 -11.74183 -11.59217 -11.46067 -11.37152 -11.15128 -11.04349 -10.84215 -10.70094 -10.60998 -10.36787 -10.03835 -9.94252 -9.76038 -9.34841 -8.61536 -8.51728 -8.28846 -7.42085 -6.12457 -4.14925 0.63970 1.03476 1.46196 1.82013 2.36563 2.52595 3.01914 3.24780 3.32103 3.35675 4.06967 4.33054 4.38020 4.38146 4.47585 4.65769 4.71281 4.92310 4.97747 5.07050 5.12683 5.17756 5.22586 5.25768 5.29828 5.31348 5.42522 5.55072 5.57143 5.67544 5.75677 5.78895 5.93693 6.19118 6.34274 6.36167 6.39462 6.55299 6.99716 7.13684 7.19121 7.39754 7.67102 7.93489 8.03874 8.07371 8.39545 8.92230 9.50065 10.98279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002417 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.047680 B =11581.905090 C =12396.826180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.105 3.895 3 C -0.240 4.240 4 S -0.002 6.002 5 C 0.479 3.521 6 O -0.470 6.470 7 N -0.533 5.533 8 C 0.117 3.883 9 C -0.157 4.157 10 C 0.521 3.479 11 O -0.551 6.551 12 N -0.604 5.604 13 C 0.107 3.893 14 C 0.051 3.949 15 N -0.536 5.536 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.041 3.959 26 C 0.117 3.883 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.192 0.808 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.098 0.902 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.027 0.973 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 13.424 -16.811 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.006 4.006 3 C -0.378 4.378 4 S 0.240 5.760 5 C 0.161 3.839 6 O -0.349 6.349 7 N -0.253 5.253 8 C -0.008 4.008 9 C -0.197 4.197 10 C 0.308 3.692 11 O -0.430 6.430 12 N -0.337 5.337 13 C -0.016 4.016 14 C -0.078 4.078 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.550 4.550 18 H 0.082 0.918 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.209 0.791 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.771 12.867 -17.085 23.947 hybrid contribution -1.674 0.028 0.941 1.920 sum 9.097 12.895 -16.144 22.576 Atomic orbital electron populations 1.20854 0.86475 1.04714 1.04379 1.19498 0.95959 0.84863 1.00284 1.24901 0.93087 1.01338 1.18506 1.85195 1.08609 1.01234 1.80930 1.21636 0.83777 0.95738 0.82721 1.90991 1.48590 1.42392 1.52947 1.46155 1.06392 1.07872 1.64920 1.21640 0.99987 0.82254 0.96935 1.21988 1.03068 0.96181 0.98509 1.20178 0.78918 0.86527 0.83574 1.90688 1.55089 1.66430 1.30842 1.48225 1.58490 1.21046 1.05926 1.22164 0.98917 0.97468 0.83061 1.22404 0.94159 0.91070 1.00183 1.62079 1.36852 1.20584 1.06611 1.19727 0.86728 0.96837 0.89769 1.21127 0.94964 1.47674 0.91212 0.91799 1.24994 0.94801 0.95360 0.99376 1.69951 1.02941 1.49355 1.31403 0.86498 0.78964 0.78229 0.83741 1.20706 1.21209 1.19705 1.22412 0.94856 1.00887 0.90636 1.21801 0.94547 0.83599 1.00540 0.89311 0.89013 0.90194 0.79100 0.87807 0.87771 0.88150 0.88180 0.90304 0.90312 0.95671 0.88381 0.99107 0.94977 0.92810 0.95528 0.89956 0.89288 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 9.70 36.01 0.35 -0.12 16 2 C 0.10 0.73 6.59 -82.51 -0.54 0.19 16 3 C -0.24 -1.53 11.24 28.82 0.32 -1.21 16 4 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 5 C 0.48 5.61 8.27 53.82 0.45 6.05 16 6 O -0.47 -7.06 17.55 5.07 0.09 -6.97 16 7 N -0.53 -5.01 2.60 -117.28 -0.31 -5.32 16 8 C 0.12 1.13 4.56 -4.05 -0.02 1.12 16 9 C -0.16 -1.57 4.39 -27.88 -0.12 -1.69 16 10 C 0.52 6.96 7.71 -10.98 -0.08 6.88 16 11 O -0.55 -8.82 15.43 5.56 0.09 -8.74 16 12 N -0.60 -8.46 3.00 -172.15 -0.52 -8.98 16 13 C 0.11 1.42 6.53 -3.36 -0.02 1.39 16 14 C 0.05 0.87 5.47 -3.47 -0.02 0.85 16 15 N -0.54 -10.66 4.62 -235.45 -1.09 -11.74 16 16 C 0.19 4.78 4.72 -4.97 -0.02 4.75 16 17 C -0.51 -13.56 8.41 -34.44 -0.29 -13.85 16 18 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 21 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.04 0.70 5.62 -3.68 -0.02 0.68 16 26 C 0.12 1.74 6.60 -3.59 -0.02 1.71 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.24 8.10 -51.93 -0.42 -0.18 16 29 H 0.08 0.38 6.19 -51.93 -0.32 0.06 16 30 H 0.19 0.66 8.06 -52.48 -0.42 0.23 16 31 H 0.10 0.88 6.08 -51.93 -0.32 0.56 16 32 H 0.10 1.20 7.76 -51.93 -0.40 0.80 16 33 H 0.10 1.03 7.99 -51.92 -0.41 0.61 16 34 H 0.10 0.83 7.67 -51.93 -0.40 0.43 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.82 6.02 -51.93 -0.31 0.50 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 39 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 40 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.47 8.14 -51.94 -0.42 0.04 16 43 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 44 H 0.09 1.30 7.06 -51.92 -0.37 0.93 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -32.61 377.42 -9.54 -42.15 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.60 Total: -2.49 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.15 Total: 8.20 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -1.17 Total: -51.08 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.17 Total: -15.71 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.61 -9.54 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.931 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds