Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32561 * 121.64521 * 2 1 4 4 S 1.77231 * 105.31794 * 180.02562 * 3 2 1 5 5 C 1.72209 * 94.84622 * 0.02562 * 4 3 2 6 6 O 1.21832 * 127.05393 * 180.02562 * 5 4 3 7 7 N 1.34245 * 105.88553 * 0.02562 * 5 4 3 8 8 C 1.46491 * 121.37722 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47602 * 89.97271 * 8 7 5 10 10 C 1.50703 * 109.47428 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99941 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00034 * 179.97438 * 10 9 8 13 13 C 1.47085 * 120.88295 * 359.72330 * 12 10 9 14 14 C 1.53696 * 108.27688 * 128.75549 * 13 12 10 15 15 N 1.46893 * 109.25641 * 54.08619 * 14 13 12 16 16 C 1.46903 * 110.99990 * 172.61024 * 15 14 13 17 17 C 1.50701 * 109.46804 * 294.29948 * 16 15 14 18 18 H 1.08000 * 120.00268 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99631 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00678 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99851 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47185 * 89.99705 * 21 19 17 23 23 H 1.48494 * 109.47363 * 209.99935 * 21 19 17 24 24 H 1.48499 * 109.47089 * 330.00078 * 21 19 17 25 25 C 1.46904 * 111.26649 * 296.75173 * 15 14 13 26 26 C 1.47075 * 120.88467 * 180.02562 * 12 10 9 27 27 H 1.09001 * 109.46386 * 269.97918 * 1 2 3 28 28 H 1.09001 * 109.46975 * 29.96728 * 1 2 3 29 29 H 1.08993 * 109.47321 * 149.97328 * 1 2 3 30 30 H 1.08004 * 127.34488 * 0.02675 * 3 2 1 31 31 H 1.09004 * 109.47176 * 209.97056 * 8 7 5 32 32 H 1.09002 * 109.47337 * 329.96812 * 8 7 5 33 33 H 1.09008 * 109.47313 * 299.99733 * 9 8 7 34 34 H 1.09002 * 109.47149 * 59.99426 * 9 8 7 35 35 H 1.09001 * 109.62832 * 248.52849 * 13 12 10 36 36 H 1.09000 * 109.62442 * 9.10441 * 13 12 10 37 37 H 1.08998 * 109.64649 * 294.08083 * 14 13 12 38 38 H 1.09001 * 109.41993 * 173.95015 * 14 13 12 39 39 H 1.08999 * 109.47232 * 54.29855 * 16 15 14 40 40 H 1.08997 * 109.47205 * 174.30065 * 16 15 14 41 41 H 0.96999 * 120.00350 * 180.02562 * 20 19 17 42 42 H 1.08989 * 109.49703 * 303.14702 * 25 15 14 43 43 H 1.09001 * 109.48959 * 183.06510 * 25 15 14 44 44 H 1.09009 * 109.62637 * 350.89843 * 26 12 10 45 45 H 1.09002 * 109.63006 * 111.47216 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0008 5 6 3.5606 -1.0574 -0.0018 6 8 4.3674 -1.9703 -0.0022 7 7 2.2222 -1.1604 -0.0021 8 6 1.5577 -2.4660 -0.0024 9 6 1.3266 -2.9211 1.4399 10 6 0.6425 -4.2639 1.4395 11 8 0.3674 -4.8040 0.3891 12 7 0.3375 -4.8651 2.6065 13 6 0.6687 -4.2310 3.8917 14 6 -0.5986 -4.2128 4.7610 15 7 -1.1364 -5.5760 4.8621 16 6 -2.2449 -5.6346 5.8243 17 6 -1.7247 -5.3430 7.2083 18 1 -0.6755 -5.1353 7.3581 19 6 -2.5880 -5.3423 8.2832 20 7 -3.8655 -5.5957 8.1009 21 14 -1.9431 -4.9815 9.9989 22 1 -2.0149 -3.5209 10.2577 23 1 -2.7691 -5.7028 11.0001 24 1 -0.5324 -5.4337 10.1027 25 6 -1.5528 -6.0834 3.5479 26 6 -0.3296 -6.1757 2.6289 27 1 -0.3632 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8897 -0.5142 30 1 1.8153 2.1367 0.0004 31 1 0.5996 -2.3860 -0.5160 32 1 2.1859 -3.1933 -0.5167 33 1 2.2848 -3.0013 1.9536 34 1 0.6984 -2.1938 1.9542 35 1 1.4509 -4.8027 4.3912 36 1 1.0106 -3.2105 3.7190 37 1 -1.3447 -3.5602 4.3076 38 1 -0.3500 -3.8451 5.7565 39 1 -2.9985 -4.8943 5.5559 40 1 -2.6900 -6.6294 5.8056 41 1 -4.4730 -5.5948 8.8572 42 1 -2.2855 -5.4048 3.1114 43 1 -1.9961 -7.0724 3.6636 44 1 -0.6480 -6.4417 1.6208 45 1 0.3587 -6.9305 3.0095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -48.110382 kcal Electronic energy + Delta-G solvation = -27256.181474 eV Core-core repulsion = 23399.938337 eV Total energy + Delta-G solvation = -3856.243137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17420 -41.17158 -39.06848 -38.67785 -36.01752 -34.64608 -34.32405 -32.56916 -31.86389 -30.13225 -29.07964 -27.31658 -25.95490 -24.72094 -24.30023 -23.59190 -22.04097 -21.30411 -19.93919 -19.05176 -18.70245 -18.49295 -17.66047 -17.50408 -16.86178 -16.72416 -16.65266 -16.05355 -16.01898 -15.59727 -15.35060 -15.25598 -14.95025 -14.75340 -14.55261 -14.42377 -14.17436 -13.92435 -13.78935 -13.45799 -13.15761 -13.04746 -12.76867 -12.60995 -12.45757 -12.40968 -12.36348 -12.22166 -12.13976 -12.05988 -11.78498 -11.28720 -11.23193 -10.98748 -10.62061 -10.59988 -9.83005 -9.06380 -8.96253 -8.20444 -6.30693 -0.11852 0.38049 0.86257 1.10869 1.43211 1.44951 1.46366 1.56007 1.61745 1.98773 2.40946 3.12184 3.21292 3.32121 3.57801 3.62129 3.73566 3.95093 4.01623 4.15111 4.21191 4.23722 4.26997 4.38719 4.44294 4.50787 4.57609 4.64979 4.71268 4.76848 4.78793 4.83127 4.93084 5.00068 5.01184 5.18258 5.21920 5.29752 5.38999 5.63817 5.73874 6.02299 6.20522 6.22584 6.36083 6.55704 6.85451 6.98663 7.39594 8.90758 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002417 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.047680 B =11581.905090 C =12396.826180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.091 3.909 3 C -0.221 4.221 4 S -0.001 6.001 5 C 0.460 3.540 6 O -0.521 6.521 7 N -0.529 5.529 8 C 0.121 3.879 9 C -0.146 4.146 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.609 5.609 13 C 0.118 3.882 14 C 0.051 3.949 15 N -0.543 5.543 16 C 0.209 3.791 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.045 3.955 26 C 0.126 3.874 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.227 0.773 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.022 0.978 38 H 0.086 0.914 39 H -0.038 1.038 40 H 0.003 0.997 41 H 0.264 0.736 42 H 0.020 0.980 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 15.841 -16.696 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 C -0.358 4.358 4 S 0.242 5.758 5 C 0.144 3.856 6 O -0.404 6.404 7 N -0.249 5.249 8 C -0.004 4.004 9 C -0.186 4.186 10 C 0.311 3.689 11 O -0.459 6.459 12 N -0.342 5.342 13 C -0.004 4.004 14 C -0.078 4.078 15 N -0.268 5.268 16 C 0.083 3.917 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.084 4.084 26 C 0.003 3.997 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.244 0.756 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.040 0.960 38 H 0.104 0.896 39 H -0.020 1.020 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.400 15.331 -16.988 25.566 hybrid contribution -1.914 -0.658 0.822 2.185 sum 9.485 14.673 -16.166 23.804 Atomic orbital electron populations 1.20968 0.84266 1.05744 1.05192 1.19965 0.97188 0.84005 1.00647 1.25423 0.90800 1.02677 1.16935 1.85212 1.11103 0.99210 1.80249 1.22020 0.84238 0.96370 0.82958 1.90952 1.49966 1.44168 1.55353 1.46165 1.05889 1.08546 1.64313 1.21529 1.00043 0.82172 0.96699 1.21937 1.03083 0.94594 0.99021 1.20675 0.78238 0.87246 0.82720 1.90681 1.56167 1.67320 1.31750 1.48294 1.58545 1.20785 1.06529 1.22129 0.96653 0.99664 0.81953 1.22440 0.95662 0.89209 1.00497 1.61993 1.34780 1.22703 1.07290 1.19358 0.87376 0.94134 0.90798 1.21454 0.95200 1.47170 0.92123 0.91318 1.25906 0.94923 0.95101 1.03683 1.70085 1.04317 1.50574 1.32660 0.85393 0.78518 0.78385 0.78395 1.19631 1.21246 1.18763 1.22421 0.95984 1.00399 0.89614 1.21633 0.93592 0.84513 0.99918 0.88486 0.86651 0.90552 0.75612 0.86399 0.90169 0.87977 0.85612 0.89984 0.86635 0.95954 0.89597 1.02029 0.97850 0.92729 0.96190 0.90218 0.88911 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 9.70 71.24 0.69 0.15 16 2 C 0.09 1.00 6.59 40.72 0.27 1.27 16 3 C -0.22 -2.04 11.24 66.67 0.75 -1.29 16 4 S 0.00 -0.01 22.97 -56.49 -1.30 -1.31 16 5 C 0.46 10.57 8.27 129.87 1.07 11.65 16 6 O -0.52 -16.13 17.55 -4.77 -0.08 -16.21 16 7 N -0.53 -9.13 2.60 -643.43 -1.68 -10.80 16 8 C 0.12 2.20 4.56 86.38 0.39 2.60 16 9 C -0.15 -2.60 4.39 29.85 0.13 -2.47 16 10 C 0.52 13.11 7.71 87.66 0.68 13.79 16 11 O -0.58 -17.99 15.43 -3.03 -0.05 -18.04 16 12 N -0.61 -16.06 3.00 -816.96 -2.45 -18.52 16 13 C 0.12 2.88 6.53 86.50 0.57 3.44 16 14 C 0.05 1.68 5.47 86.54 0.47 2.16 16 15 N -0.54 -21.72 4.62 -898.82 -4.15 -25.87 16 16 C 0.21 10.63 4.72 85.56 0.40 11.04 16 17 C -0.52 -27.90 8.41 25.60 0.22 -27.69 16 18 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.94 -54.75 13.29 21.45 0.28 -54.47 16 21 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 C 0.04 1.54 5.62 86.39 0.49 2.02 16 26 C 0.13 3.64 6.60 86.36 0.57 4.21 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.11 0.09 8.10 -2.39 -0.02 0.07 16 29 H 0.08 0.49 6.19 -2.39 -0.01 0.48 16 30 H 0.23 0.42 8.06 -2.91 -0.02 0.39 16 31 H 0.12 1.79 6.08 -2.38 -0.01 1.78 16 32 H 0.08 1.88 7.76 -2.39 -0.02 1.86 16 33 H 0.10 1.87 7.99 -2.38 -0.02 1.85 16 34 H 0.13 1.62 7.67 -2.39 -0.02 1.60 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.12 1.98 6.02 -2.39 -0.01 1.97 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 3.06 6.67 -2.39 -0.02 3.05 16 39 H -0.04 -2.11 8.12 -2.39 -0.02 -2.13 16 40 H 0.00 0.19 7.97 -2.39 -0.02 0.17 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 2.73 7.99 -2.39 -0.02 2.71 16 44 H 0.09 2.64 7.06 -2.38 -0.02 2.62 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -73.23 377.42 0.76 -72.46 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.00 Total: 6.95 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.16 Total: 21.44 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -8.00 Total: -109.66 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.13 Total: -34.25 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.30 Total: -1.31 kcal Total: -73.23 0.76 -72.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.354 kcal (2) G-P(sol) polarization free energy of solvation -73.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds