Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29031 * 124.91221 * 2 1 4 4 C 1.31780 * 117.12458 * 179.97438 * 3 2 1 5 5 C 1.33644 * 114.49732 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.03473 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47461 * 20.00354 * 6 5 4 8 8 C 1.52996 * 109.47271 * 259.99627 * 6 5 4 9 9 N 1.46507 * 109.47031 * 140.00133 * 6 5 4 10 10 C 1.34777 * 120.00018 * 205.00145 * 9 6 5 11 11 O 1.21353 * 120.00191 * 359.97438 * 10 9 6 12 12 C 1.49456 * 120.00036 * 179.97438 * 10 9 6 13 13 O 1.21346 * 119.99739 * 359.97438 * 12 10 9 14 14 N 1.34773 * 119.99721 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99620 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47152 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.46791 * 300.00314 * 16 15 14 18 18 C 1.53000 * 109.46818 * 60.00321 * 16 15 14 19 19 C 1.50700 * 109.46929 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00508 * 1.35336 * 19 16 15 21 21 C 1.37880 * 119.99662 * 181.34410 * 19 16 15 22 22 N 1.31514 * 120.00230 * 193.97744 * 21 19 16 23 23 Si 1.86803 * 120.00006 * 13.98289 * 21 19 16 24 24 H 1.48499 * 109.47167 * 84.54405 * 23 21 19 25 25 H 1.48500 * 109.47069 * 204.54831 * 23 21 19 26 26 H 1.48504 * 109.46812 * 324.54459 * 23 21 19 27 27 S 1.70970 * 124.91778 * 180.31515 * 2 1 3 28 28 H 1.08992 * 109.46665 * 89.97688 * 1 2 3 29 29 H 1.09001 * 109.46664 * 209.97442 * 1 2 3 30 30 H 1.08998 * 109.47446 * 329.97477 * 1 2 3 31 31 H 1.07995 * 122.75521 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47620 * 180.02562 * 8 6 5 33 33 H 1.08995 * 109.47738 * 300.00260 * 8 6 5 34 34 H 1.09004 * 109.47008 * 60.00622 * 8 6 5 35 35 H 0.97001 * 120.00216 * 24.99743 * 9 6 5 36 36 H 0.96997 * 120.00496 * 0.02562 * 14 12 10 37 37 H 1.08998 * 109.47830 * 300.00251 * 15 14 12 38 38 H 1.09005 * 109.46889 * 60.00565 * 15 14 12 39 39 H 1.09004 * 109.47475 * 69.36976 * 17 16 15 40 40 H 1.08999 * 109.46884 * 189.36363 * 17 16 15 41 41 H 1.08993 * 109.47270 * 309.36571 * 17 16 15 42 42 H 1.08991 * 109.47167 * 60.00192 * 18 16 15 43 43 H 1.09002 * 109.46496 * 179.97438 * 18 16 15 44 44 H 1.08999 * 109.46791 * 299.99715 * 18 16 15 45 45 H 0.96988 * 120.00442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3575 -0.8992 0.0004 7 1 6.0200 -0.1082 0.3520 8 6 5.7559 -1.3043 -1.4201 9 7 5.4682 -2.0594 0.8882 10 6 6.6545 -2.3690 1.4478 11 8 7.6312 -1.6870 1.2160 12 6 6.7673 -3.5522 2.3539 13 8 5.7906 -4.2338 2.5861 14 7 7.9537 -3.8620 2.9131 15 6 8.0641 -5.0215 3.8017 16 6 9.5060 -5.1486 4.2976 17 6 10.4423 -5.3317 3.1015 18 6 9.8961 -3.8817 5.0615 19 6 9.6196 -6.3417 5.2112 20 1 8.7556 -6.9614 5.4003 21 6 10.8269 -6.6423 5.8055 22 7 11.0067 -7.8152 6.3726 23 14 12.2071 -5.3835 5.8054 24 1 12.0276 -4.4520 6.9478 25 1 13.5123 -6.0800 5.9348 26 1 12.1786 -4.6180 4.5332 27 16 2.4857 -1.4019 -0.0077 28 1 -0.3632 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 4.2532 1.7002 0.0002 32 1 6.7843 -1.6655 -1.4201 33 1 5.0935 -2.0953 -1.7717 34 1 5.6736 -0.4412 -2.0807 35 1 4.6876 -2.6047 1.0733 36 1 8.7344 -3.3169 2.7278 37 1 7.3974 -4.8909 4.6541 38 1 7.7857 -5.9240 3.2576 39 1 10.4869 -4.4047 2.5297 40 1 11.4403 -5.5875 3.4572 41 1 10.0667 -6.1332 2.4654 42 1 9.2291 -3.7513 5.9135 43 1 10.9232 -3.9725 5.4151 44 1 9.8140 -3.0190 4.4003 45 1 11.8558 -8.0265 6.7911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602278539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -38.924144 kcal Electronic energy + Delta-G solvation = -26710.493282 eV Core-core repulsion = 22854.648490 eV Total energy + Delta-G solvation = -3855.844792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.87432 -40.81303 -39.91976 -38.45750 -37.21240 -35.08626 -33.51656 -33.32343 -31.74424 -28.70162 -28.35758 -28.01446 -27.08164 -25.76316 -24.84640 -23.12109 -21.72629 -21.12208 -20.68315 -19.47651 -19.07884 -18.15733 -17.84004 -17.16504 -17.09898 -16.62862 -16.48984 -16.03034 -15.87389 -15.66669 -15.16404 -14.95104 -14.89006 -14.65303 -14.39781 -14.29236 -14.08095 -14.03144 -13.77444 -13.41672 -13.31673 -13.04125 -12.99103 -12.82790 -12.65488 -12.39787 -12.24396 -12.20439 -11.97634 -11.78572 -11.10641 -10.85303 -10.72747 -10.62256 -10.53595 -10.41320 -10.31090 -10.20943 -9.80250 -8.30026 -6.31241 -0.41292 0.21871 0.28414 0.65331 1.23265 1.37050 1.38755 1.50396 1.76770 2.08367 2.34536 2.58496 3.05932 3.15961 3.36220 3.48286 4.00172 4.01179 4.11252 4.13727 4.29136 4.38308 4.43841 4.58514 4.63121 4.66215 4.69619 4.76562 4.79089 4.83602 4.90550 4.98907 5.04275 5.06879 5.08498 5.15838 5.20519 5.28794 5.47099 5.67320 5.75011 5.82401 6.24964 6.31551 6.62375 6.67405 6.73230 6.90024 7.33551 8.86471 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.002148 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.830632 B =13029.243789 C =13443.655619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.047 3.953 3 N -0.502 5.502 4 C 0.052 3.948 5 C -0.251 4.251 6 C 0.224 3.776 7 H 0.114 0.886 8 C -0.157 4.157 9 N -0.692 5.692 10 C 0.522 3.478 11 O -0.528 6.528 12 C 0.499 3.501 13 O -0.548 6.548 14 N -0.680 5.680 15 C 0.152 3.848 16 C 0.026 3.974 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.513 4.513 20 H 0.036 0.964 21 C 0.019 3.981 22 N -0.942 5.942 23 Si 0.940 3.060 24 H -0.282 1.282 25 H -0.315 1.315 26 H -0.209 1.209 27 S 0.146 5.854 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 18.772 -17.900 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.230 4.230 3 N -0.218 5.218 4 C -0.100 4.100 5 C -0.373 4.373 6 C 0.118 3.882 7 H 0.132 0.868 8 C -0.215 4.215 9 N -0.346 5.346 10 C 0.302 3.698 11 O -0.404 6.404 12 C 0.279 3.721 13 O -0.427 6.427 14 N -0.333 5.333 15 C 0.029 3.971 16 C 0.025 3.975 17 C -0.201 4.201 18 C -0.207 4.207 19 C -0.551 4.551 20 H 0.054 0.946 21 C -0.179 4.179 22 N -0.581 5.581 23 Si 0.770 3.230 24 H -0.210 1.210 25 H -0.245 1.245 26 H -0.133 1.133 27 S 0.402 5.598 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.210 0.790 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.250 0.750 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.868 18.103 -17.826 31.060 hybrid contribution 1.368 0.491 0.749 1.635 sum -16.500 18.594 -17.077 30.159 Atomic orbital electron populations 1.20664 0.82897 1.05374 1.05297 1.27725 1.03314 0.90665 1.01305 1.66396 1.05201 1.32357 1.17819 1.21988 0.91337 0.96101 1.00559 1.25985 0.99044 0.97272 1.14982 1.19376 0.89809 0.87772 0.91200 0.86828 1.22206 1.02211 1.03311 0.93768 1.45989 1.11146 1.30402 1.47083 1.19929 0.84049 0.84957 0.80868 1.90760 1.36933 1.51442 1.61247 1.20271 0.84050 0.85745 0.81997 1.90746 1.37391 1.52536 1.62026 1.45961 1.11058 1.30338 1.45936 1.21324 0.97823 0.86170 0.91750 1.18690 0.91433 0.93751 0.93672 1.22248 0.99691 1.00488 0.97676 1.22327 0.99920 0.97781 1.00681 1.20951 0.96136 1.10340 1.27682 0.94611 1.25793 1.00946 0.96416 0.94729 1.70089 1.26152 1.22310 1.39590 0.86402 0.76785 0.78986 0.80870 1.20983 1.24490 1.13275 1.84078 0.96616 1.11672 1.67483 0.87853 0.88285 0.88895 0.79000 0.91769 0.91645 0.89067 0.74987 0.74497 0.92289 0.92360 0.92197 0.93518 0.93516 0.92967 0.94649 0.91397 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.46 71.24 0.75 0.13 16 2 C 0.05 0.67 7.39 88.52 0.65 1.32 16 3 N -0.50 -9.03 10.54 -191.44 -2.02 -11.05 16 4 C 0.05 0.82 11.24 83.66 0.94 1.76 16 5 C -0.25 -3.83 5.51 24.64 0.14 -3.70 16 6 C 0.22 3.59 3.03 44.24 0.13 3.73 16 7 H 0.11 1.85 7.57 -2.39 -0.02 1.83 16 8 C -0.16 -2.15 9.47 71.98 0.68 -1.46 16 9 N -0.69 -14.04 5.06 -447.42 -2.26 -16.31 16 10 C 0.52 13.35 7.85 87.27 0.69 14.03 16 11 O -0.53 -14.66 16.14 -3.26 -0.05 -14.71 16 12 C 0.50 15.20 7.89 87.27 0.69 15.89 16 13 O -0.55 -19.13 16.48 -3.23 -0.05 -19.18 16 14 N -0.68 -21.29 5.00 -464.40 -2.32 -23.61 16 15 C 0.15 5.77 4.49 86.38 0.39 6.16 16 16 C 0.03 1.07 0.50 -52.93 -0.03 1.04 16 17 C -0.14 -5.47 7.53 71.98 0.54 -4.93 16 18 C -0.15 -5.67 7.52 71.98 0.54 -5.13 16 19 C -0.51 -27.51 8.62 25.60 0.22 -27.29 16 20 H 0.04 2.15 7.99 -2.91 -0.02 2.13 16 21 C 0.02 1.06 5.32 84.66 0.45 1.51 16 22 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 23 Si 0.94 42.71 22.79 68.60 1.56 44.27 16 24 H -0.28 -12.63 7.10 99.48 0.71 -11.92 16 25 H -0.32 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.21 -8.16 4.65 99.48 0.46 -7.70 16 27 S 0.15 2.01 22.25 -56.49 -1.26 0.75 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.41 8.17 7.23 -92.71 -0.67 7.50 16 36 H 0.42 11.85 5.73 -92.71 -0.53 11.32 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.06 1.86 7.13 -2.39 -0.02 1.84 16 40 H 0.05 1.88 4.30 -2.39 -0.01 1.87 16 41 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.40 2.25 -2.39 -0.01 1.39 16 44 H 0.07 2.08 6.86 -2.39 -0.02 2.06 16 45 H 0.26 15.28 8.31 -92.72 -0.77 14.51 16 Total: -1.00 -68.69 374.73 0.27 -68.41 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.40 Total: 25.62 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 6.78 Total: 3.07 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -6.30 Total: -108.23 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.11 Total: -33.89 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.56 Total: 44.27 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.26 Total: 0.75 kcal Total: -68.69 0.27 -68.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602278539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.491 kcal (2) G-P(sol) polarization free energy of solvation -68.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds