Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99602 * 2 1 4 4 C 1.53010 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46826 * 64.99670 * 4 3 2 6 6 C 1.46500 * 119.99961 * 85.01381 * 5 4 3 7 7 C 1.50700 * 109.46879 * 94.30912 * 6 5 4 8 8 H 1.08004 * 120.00364 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99747 * 180.02562 * 7 6 5 10 10 N 1.31508 * 119.99931 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99965 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47170 * 59.99863 * 11 9 7 13 13 H 1.48500 * 109.47077 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47238 * 299.99942 * 11 9 7 15 15 C 1.34783 * 119.99897 * 265.00700 * 5 4 3 16 16 O 1.21748 * 120.00004 * 5.60340 * 15 5 4 17 17 C 1.46226 * 119.99585 * 185.59970 * 15 5 4 18 18 S 1.76183 * 126.11137 * 6.55906 * 17 15 5 19 19 C 1.70921 * 90.41924 * 180.02562 * 18 17 15 20 20 N 1.37844 * 124.74422 * 179.97438 * 19 18 17 21 21 C 1.46508 * 119.99760 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.49692 * 223.62316 * 21 20 19 23 23 C 1.52996 * 117.49915 * 154.99776 * 21 20 19 24 24 N 1.30230 * 110.50597 * 0.02562 * 19 18 17 25 25 C 1.30876 * 117.26057 * 359.70370 * 24 19 18 26 26 C 1.50705 * 122.98491 * 180.33524 * 25 24 19 27 27 H 1.09009 * 109.46969 * 60.00538 * 1 2 3 28 28 H 1.09000 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47637 * 300.00413 * 1 2 3 30 30 H 1.08997 * 109.47760 * 59.99849 * 3 2 1 31 31 H 1.09005 * 109.47154 * 299.98986 * 3 2 1 32 32 H 1.09002 * 109.46742 * 305.00119 * 4 3 2 33 33 H 1.08997 * 109.47398 * 184.99532 * 4 3 2 34 34 H 1.08994 * 109.47314 * 214.30635 * 6 5 4 35 35 H 1.09000 * 109.47064 * 334.30774 * 6 5 4 36 36 H 0.97001 * 120.00271 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00652 * 359.97438 * 20 19 18 38 38 H 1.08995 * 115.54626 * 9.32556 * 21 20 19 39 39 H 1.09006 * 117.49685 * 359.97438 * 22 21 20 40 40 H 1.08990 * 117.50371 * 145.01711 * 22 21 20 41 41 H 1.08990 * 117.49957 * 214.97290 * 23 21 20 42 42 H 1.09003 * 117.49895 * 0.02562 * 23 21 20 43 43 H 1.09003 * 109.46868 * 270.21359 * 26 25 24 44 44 H 1.09006 * 109.46847 * 30.20950 * 26 25 24 45 45 H 1.08995 * 109.46927 * 150.21236 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1830 1.3881 -2.4444 7 6 5.6331 1.7883 -2.5339 8 1 6.3312 1.4618 -1.7772 9 6 6.0686 2.5722 -3.5813 10 7 5.2185 2.9702 -4.5024 11 14 7.8659 3.0688 -3.6919 12 1 8.7115 1.8512 -3.7794 13 1 8.0751 3.9041 -4.9017 14 1 8.2402 3.8455 -2.4827 15 6 4.1928 -0.7653 -1.3042 16 8 3.9245 -1.4647 -0.3444 17 6 4.7494 -1.3675 -2.5149 18 16 5.3438 -0.4988 -3.9278 19 6 5.7320 -1.9787 -4.6899 20 7 6.2902 -2.0932 -5.9450 21 6 6.5807 -3.4179 -6.4994 22 6 7.9238 -3.6085 -7.2069 23 6 6.6307 -3.5507 -8.0227 24 7 5.4257 -2.9828 -3.9193 25 6 4.9057 -2.7049 -2.7508 26 6 4.5107 -3.7653 -1.7554 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8507 0.5686 0.8427 33 1 3.9784 2.1766 0.0901 34 1 3.9080 0.8179 -3.3317 35 1 3.5626 2.2821 -2.3803 36 1 5.5247 3.5220 -5.2390 37 1 6.4901 -1.2968 -6.4615 38 1 6.1855 -4.2613 -5.9333 39 1 8.5911 -2.7482 -7.2603 40 1 8.4126 -4.5775 -7.1064 41 1 6.2688 -4.4817 -8.4589 42 1 6.4479 -2.6524 -8.6125 43 1 3.4752 -4.0585 -1.9286 44 1 5.1588 -4.6338 -1.8734 45 1 4.6124 -3.3706 -0.7446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771024912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -0.813464 kcal Electronic energy + Delta-G solvation = -28118.768628 eV Core-core repulsion = 24264.576439 eV Total energy + Delta-G solvation = -3854.192189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.36183 -38.67068 -37.52203 -37.07222 -34.96116 -33.37596 -32.86268 -30.30635 -29.56604 -27.53555 -26.97677 -25.79896 -23.43758 -23.25348 -22.67690 -22.38214 -21.54114 -19.67443 -17.98851 -17.59797 -16.83411 -16.41249 -16.30972 -15.79490 -15.54488 -15.06622 -14.90558 -14.60104 -14.45149 -14.36434 -13.94723 -13.41752 -13.02524 -12.73663 -12.58833 -12.47754 -12.31735 -12.22229 -12.05310 -11.67993 -11.60568 -11.55592 -11.42052 -11.19836 -11.10982 -10.86681 -10.69235 -10.46859 -10.31585 -10.08681 -9.97207 -9.30855 -9.19894 -8.94624 -8.88528 -8.39519 -8.10836 -7.76178 -6.84708 -6.42044 -4.43585 1.47427 2.19866 2.79840 3.12580 3.16257 3.20821 3.42513 3.59974 3.96619 3.98161 4.15013 4.16607 4.31882 4.79410 4.91479 4.97010 5.00384 5.24526 5.40697 5.49415 5.58596 5.61863 5.66424 5.70662 5.78662 5.81164 5.86655 5.95166 5.97775 6.05007 6.14147 6.28413 6.38770 6.41169 6.57168 6.65951 6.91895 6.96932 7.42578 7.47366 7.52164 7.56439 7.62478 7.74405 8.32350 8.59513 8.75081 9.09890 9.22432 10.59808 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.005149 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.748716 B = 5436.659251 C = 7628.261724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.045 3.955 4 C 0.127 3.873 5 N -0.600 5.600 6 C 0.227 3.773 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.077 3.923 10 N -0.872 5.872 11 Si 0.889 3.111 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.606 3.394 16 O -0.551 6.551 17 C -0.360 4.360 18 S 0.322 5.678 19 C 0.210 3.790 20 N -0.667 5.667 21 C 0.106 3.894 22 C -0.203 4.203 23 C -0.198 4.198 24 N -0.571 5.571 25 C 0.170 3.830 26 C -0.080 4.080 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.271 0.729 37 H 0.411 0.589 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -4.819 -1.642 5.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.033 4.033 4 C 0.003 3.997 5 N -0.331 5.331 6 C 0.104 3.896 7 C -0.570 4.570 8 H 0.089 0.911 9 C -0.131 4.131 10 N -0.508 5.508 11 Si 0.715 3.285 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.396 3.604 16 O -0.432 6.432 17 C -0.487 4.487 18 S 0.588 5.412 19 C -0.152 4.152 20 N -0.303 5.303 21 C -0.003 4.003 22 C -0.243 4.243 23 C -0.237 4.237 24 N -0.296 5.296 25 C 0.028 3.972 26 C -0.139 4.139 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.762 -4.890 -1.972 5.559 hybrid contribution 0.690 0.442 -0.104 0.826 sum -1.072 -4.448 -2.076 5.024 Atomic orbital electron populations 1.22666 0.82565 1.02130 0.99127 1.88130 1.18165 1.27152 1.95141 1.23051 0.95478 0.85132 0.99671 1.21288 0.91077 0.99181 0.88151 1.47808 1.66178 1.06880 1.12230 1.19586 0.97164 0.90981 0.81890 1.21589 0.94218 1.31418 1.09779 0.91147 1.24950 0.98249 0.94729 0.95142 1.69913 1.34720 1.34096 1.12071 0.86654 0.84518 0.79244 0.78085 1.19455 1.20752 1.19630 1.16571 0.76772 0.81618 0.85434 1.90658 1.53879 1.61168 1.37484 1.25252 1.23103 0.96849 1.03476 1.87183 1.53816 0.95437 1.04761 1.25890 0.96913 1.01658 0.90716 1.43043 1.67019 1.06613 1.13630 1.21553 0.98717 0.87972 0.92068 1.23444 0.91888 1.03355 1.05584 1.23380 1.01999 1.03481 0.94839 1.65942 1.23796 1.34301 1.05573 1.20147 0.94087 0.91986 0.91017 1.20493 1.00457 0.95059 0.97905 0.94664 0.90186 0.94823 0.93334 0.93262 0.89778 0.89138 0.93858 0.93643 0.91900 0.75252 0.84629 0.88795 0.88421 0.88266 0.88736 0.91486 0.92182 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.67 9.85 -36.39 -0.36 -7.02 16 3 C 0.04 0.72 6.28 37.16 0.23 0.96 16 4 C 0.13 2.30 5.81 -4.03 -0.02 2.27 16 5 N -0.60 -12.82 2.43 -176.76 -0.43 -13.25 16 6 C 0.23 5.12 4.74 -5.19 -0.02 5.09 16 7 C -0.52 -12.37 6.66 -34.44 -0.23 -12.60 16 8 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.08 1.80 4.90 -17.82 -0.09 1.71 16 10 N -0.87 -21.10 13.29 55.43 0.74 -20.37 16 11 Si 0.89 18.76 29.54 -169.99 -5.02 13.74 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 C 0.61 13.81 7.34 -13.05 -0.10 13.71 16 16 O -0.55 -13.00 13.27 3.99 0.05 -12.95 16 17 C -0.36 -8.00 6.21 -36.93 -0.23 -8.23 16 18 S 0.32 6.80 15.84 -107.50 -1.70 5.10 16 19 C 0.21 4.11 8.05 -87.98 -0.71 3.40 16 20 N -0.67 -10.70 5.69 -55.88 -0.32 -11.02 16 21 C 0.11 1.46 6.53 -67.93 -0.44 1.02 16 22 C -0.20 -2.29 10.46 -26.73 -0.28 -2.57 16 23 C -0.20 -2.13 10.46 -26.73 -0.28 -2.41 16 24 N -0.57 -11.72 9.69 -10.94 -0.11 -11.82 16 25 C 0.17 3.59 6.83 -83.55 -0.57 3.02 16 26 C -0.08 -1.47 9.79 36.01 0.35 -1.12 16 27 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.56 7.36 -51.93 -0.38 1.18 16 33 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 34 H 0.04 1.04 4.93 -26.28 -0.13 0.91 16 35 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 36 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 37 H 0.41 5.91 8.95 -40.82 -0.37 5.54 16 38 H 0.14 2.03 7.57 -51.93 -0.39 1.64 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.10 1.90 5.91 -51.93 -0.31 1.59 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -28.36 382.51 -9.26 -37.62 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.61 Total: 8.40 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.27 Total: 5.81 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.12 Total: -56.46 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.31 Total: -19.97 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.70 Total: 5.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.36 -9.26 -37.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771024912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.810 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds