Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47575 * 2 1 4 4 S 1.70616 * 124.52675 * 270.03082 * 3 2 1 5 5 C 1.75828 * 91.56810 * 179.97438 * 4 3 2 6 6 C 1.46579 * 125.45958 * 179.97438 * 5 4 3 7 7 O 1.21699 * 120.00259 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00182 * 0.02666 * 6 5 4 9 9 N 1.40097 * 120.00361 * 180.02562 * 8 6 5 10 10 C 1.34773 * 120.00193 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00172 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99959 * 179.97438 * 10 9 8 13 13 N 1.46903 * 109.47209 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00093 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.46681 * 324.99386 * 14 13 12 16 16 C 1.52999 * 109.47007 * 84.99710 * 14 13 12 17 17 C 1.50702 * 109.46747 * 204.99564 * 14 13 12 18 18 H 1.07996 * 120.00286 * 356.67536 * 17 14 13 19 19 C 1.37882 * 119.99605 * 176.67977 * 17 14 13 20 20 N 1.31510 * 119.99983 * 352.39286 * 19 17 14 21 21 Si 1.86801 * 119.99794 * 172.67966 * 19 17 14 22 22 H 1.48501 * 109.46865 * 264.79000 * 21 19 17 23 23 H 1.48494 * 109.47181 * 24.78760 * 21 19 17 24 24 H 1.48494 * 109.47146 * 144.79188 * 21 19 17 25 25 C 1.36648 * 109.08358 * 0.26510 * 5 4 3 26 26 C 1.33823 * 124.52445 * 89.98093 * 3 2 1 27 27 C 1.50695 * 122.44494 * 0.06717 * 26 3 2 28 28 H 1.08998 * 109.47297 * 59.99408 * 1 2 3 29 29 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46864 * 299.99507 * 1 2 3 31 31 H 1.09005 * 109.46982 * 239.99986 * 2 1 3 32 32 H 1.09000 * 109.47646 * 120.00197 * 2 1 3 33 33 H 0.97008 * 119.99755 * 359.97438 * 8 6 5 34 34 H 0.97008 * 119.99883 * 359.97438 * 9 8 6 35 35 H 1.08998 * 109.47202 * 59.99921 * 12 10 9 36 36 H 1.09003 * 109.47327 * 299.99903 * 12 10 9 37 37 H 1.00903 * 110.99501 * 303.95104 * 13 12 10 38 38 H 1.09003 * 109.46886 * 177.66018 * 16 14 13 39 39 H 1.08998 * 109.47467 * 297.65590 * 16 14 13 40 40 H 1.08992 * 109.47550 * 57.66386 * 16 14 13 41 41 H 0.97007 * 119.99993 * 180.27562 * 20 19 17 42 42 H 1.07991 * 123.35283 * 179.70331 * 25 5 4 43 43 H 1.09003 * 109.47215 * 89.99931 * 27 26 3 44 44 H 1.09000 * 109.47024 * 209.99433 * 27 26 3 45 45 H 1.08997 * 109.47331 * 329.99299 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3541 2.3327 -1.4056 5 6 2.8457 3.7237 -0.4491 6 6 3.3000 5.0087 -0.9882 7 8 3.6182 5.9076 -0.2320 8 7 3.3654 5.1949 -2.3215 9 7 3.8001 6.4230 -2.8369 10 6 3.8660 6.6090 -4.1701 11 8 3.5485 5.7134 -4.9238 12 6 4.3331 7.9302 -4.7244 13 7 4.3146 7.8794 -6.1924 14 6 4.7655 9.1530 -6.7690 15 1 4.4319 9.9762 -6.1372 16 6 6.2931 9.1619 -6.8539 17 6 4.1846 9.3126 -8.1504 18 1 3.5886 8.5213 -8.5803 19 6 4.4142 10.4690 -8.8654 20 7 5.0104 11.4903 -8.2901 21 14 3.8713 10.5878 -10.6488 22 1 5.0092 10.2391 -11.5369 23 1 2.7494 9.6449 -10.8885 24 1 3.4237 11.9736 -10.9387 25 6 2.7425 3.4126 0.8775 26 6 2.2849 2.1359 1.1025 27 6 2.0893 1.5797 2.4894 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.1121 4.4783 -2.9243 34 1 4.0538 7.1395 -2.2341 35 1 5.3477 8.1303 -4.3802 36 1 3.6696 8.7236 -4.3803 37 1 4.8715 7.1106 -6.5346 38 1 6.6257 10.0896 -7.3199 39 1 6.7133 9.0883 -5.8509 40 1 6.6288 8.3146 -7.4516 41 1 5.1684 12.3054 -8.7919 42 1 2.9926 4.1020 1.6702 43 1 3.0114 1.1039 2.8234 44 1 1.8301 2.3889 3.1721 45 1 1.2850 0.8442 2.4758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878817887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -38.138495 kcal Electronic energy + Delta-G solvation = -25657.390813 eV Core-core repulsion = 21801.580089 eV Total energy + Delta-G solvation = -3855.810724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60219 -40.41416 -39.44293 -37.62474 -36.50327 -34.81949 -34.48380 -33.03764 -31.34595 -30.64525 -28.42117 -27.27355 -26.88737 -25.45588 -23.39223 -22.74995 -22.24294 -21.81443 -19.86445 -19.52616 -18.83845 -18.49010 -17.67660 -17.06962 -17.00002 -16.59001 -16.38123 -16.21825 -15.73665 -15.39072 -15.19646 -15.11298 -14.69483 -14.57511 -14.46673 -14.09502 -13.63398 -13.46523 -13.34375 -13.19707 -13.03712 -12.87168 -12.81743 -12.73509 -12.52405 -12.41057 -12.26365 -12.19839 -12.09884 -11.91700 -11.68644 -11.66361 -11.30692 -10.99046 -10.45000 -9.88033 -9.59768 -9.38039 -9.03668 -8.11305 -6.17946 -0.64954 0.33867 0.54155 0.82819 1.12297 1.42528 1.43579 1.45124 1.56152 1.95669 2.45370 2.75304 3.19200 3.38079 3.65862 3.67999 3.81932 4.05200 4.14265 4.37297 4.38149 4.42294 4.43565 4.49470 4.74889 4.75746 4.81992 4.87384 4.88355 5.00525 5.04215 5.04751 5.11247 5.28335 5.33063 5.35644 5.39198 5.49798 5.54692 5.68898 5.76966 6.19239 6.28801 6.59111 6.61861 6.73712 6.93629 7.13524 7.50099 8.96257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026248 B = 0.001780 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.500358 B =15727.437715 C =16486.757635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.178 4.178 4 S 0.215 5.785 5 C -0.299 4.299 6 C 0.595 3.405 7 O -0.561 6.561 8 N -0.519 5.519 9 N -0.518 5.518 10 C 0.524 3.476 11 O -0.555 6.555 12 C 0.056 3.944 13 N -0.678 5.678 14 C 0.215 3.785 15 H 0.020 0.980 16 C -0.155 4.155 17 C -0.516 4.516 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.284 1.284 25 C -0.033 4.033 26 C -0.133 4.133 27 C -0.093 4.093 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.431 0.569 34 H 0.440 0.560 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.337 0.663 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.155 0.845 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 -24.255 23.328 34.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.298 4.298 4 S 0.486 5.514 5 C -0.420 4.420 6 C 0.384 3.616 7 O -0.440 6.440 8 N -0.265 5.265 9 N -0.269 5.269 10 C 0.312 3.688 11 O -0.430 6.430 12 C -0.078 4.078 13 N -0.310 5.310 14 C 0.107 3.893 15 H 0.038 0.962 16 C -0.214 4.214 17 C -0.555 4.555 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.559 5.559 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.198 1.198 24 H -0.209 1.209 25 C -0.068 4.068 26 C -0.145 4.145 27 C -0.151 4.151 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.274 0.726 34 H 0.284 0.716 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.173 0.827 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.459 -24.192 21.602 33.070 hybrid contribution 0.956 0.932 0.565 1.450 sum -5.503 -23.259 22.167 32.599 Atomic orbital electron populations 1.21806 0.93401 1.03185 1.02279 1.20326 0.96789 0.87701 1.04923 1.24536 1.05712 1.03023 0.96498 1.83181 1.59572 1.01201 1.07491 1.23936 1.20325 0.98628 0.99146 1.17231 0.77462 0.87039 0.79887 1.90827 1.51471 1.43810 1.57927 1.44703 1.67494 1.08096 1.06234 1.44981 1.68134 1.07170 1.06611 1.21295 0.77101 0.90752 0.79686 1.90692 1.49498 1.44806 1.58049 1.21751 1.02260 0.92692 0.91118 1.60409 1.60768 1.06686 1.03097 1.19027 0.90426 0.85848 0.93956 0.96178 1.22223 0.99394 1.01172 0.98630 1.21391 1.31524 1.01671 1.00905 0.93150 1.25635 0.95728 0.95181 1.02031 1.70036 1.44398 1.04011 1.37467 0.85579 0.78465 0.77118 0.80654 1.20166 1.19833 1.20930 1.20817 0.94950 0.96531 0.94456 1.18889 1.04264 0.93189 0.98109 1.20593 1.03207 1.01599 0.89732 0.93188 0.90236 0.92111 0.89736 0.87836 0.72611 0.71560 0.90149 0.86998 0.84548 0.93013 0.94352 0.94627 0.92935 0.82726 0.90172 0.90802 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 71.98 0.71 -0.26 16 2 C -0.06 -0.42 5.72 29.84 0.17 -0.25 16 3 C -0.18 -2.20 5.53 24.68 0.14 -2.07 16 4 S 0.21 3.34 22.10 -56.49 -1.25 2.09 16 5 C -0.30 -6.13 6.45 24.07 0.16 -5.98 16 6 C 0.60 15.25 7.90 86.42 0.68 15.93 16 7 O -0.56 -17.13 16.68 -4.34 -0.07 -17.20 16 8 N -0.52 -13.25 6.26 -176.45 -1.10 -14.35 16 9 N -0.52 -13.70 6.26 -173.54 -1.09 -14.79 16 10 C 0.52 16.53 7.98 87.66 0.70 17.23 16 11 O -0.56 -21.14 16.04 -3.03 -0.05 -21.19 16 12 C 0.06 1.80 5.96 85.56 0.51 2.31 16 13 N -0.68 -28.67 5.86 -499.46 -2.93 -31.59 16 14 C 0.22 10.58 2.46 44.17 0.11 10.69 16 15 H 0.02 1.07 7.79 -2.39 -0.02 1.06 16 16 C -0.15 -7.02 9.00 71.98 0.65 -6.37 16 17 C -0.52 -28.75 8.79 25.60 0.23 -28.52 16 18 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 19 C 0.01 0.71 5.21 84.66 0.44 1.16 16 20 N -0.92 -52.41 11.92 21.45 0.26 -52.15 16 21 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C -0.03 -0.57 9.80 21.72 0.21 -0.36 16 26 C -0.13 -1.75 5.78 -21.05 -0.12 -1.87 16 27 C -0.09 -0.69 9.55 71.23 0.68 -0.01 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.41 7.81 -2.38 -0.02 0.39 16 31 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.10 0.43 7.25 -2.39 -0.02 0.41 16 33 H 0.43 10.50 7.11 -213.31 -1.52 8.98 16 34 H 0.44 10.20 8.00 -213.31 -1.71 8.50 16 35 H 0.08 2.26 7.48 -2.39 -0.02 2.24 16 36 H 0.11 3.45 8.06 -2.39 -0.02 3.43 16 37 H 0.34 14.08 8.15 -89.69 -0.73 13.35 16 38 H 0.05 2.63 6.59 -2.39 -0.02 2.61 16 39 H 0.04 1.47 7.51 -2.39 -0.02 1.46 16 40 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 41 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 42 H 0.16 2.61 8.06 -2.92 -0.02 2.59 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 0.50 8.13 -2.39 -0.02 0.48 16 45 H 0.08 0.39 6.86 -2.39 -0.02 0.38 16 Total: -1.00 -69.78 391.61 -1.85 -71.63 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -2.91 Total: 29.61 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.26 Total: 1.63 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.86 Total: -112.89 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.12 Total: -38.39 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.25 Total: 2.09 kcal Total: -69.78 -1.85 -71.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.495 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds