Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32570 * 121.64992 * 2 1 4 4 S 1.77221 * 105.32111 * 180.19201 * 3 2 1 5 5 C 1.72204 * 94.84872 * 359.76138 * 4 3 2 6 6 O 1.21826 * 127.06057 * 179.97438 * 5 4 3 7 7 N 1.34245 * 105.88415 * 359.97438 * 5 4 3 8 8 C 1.46498 * 121.37821 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47190 * 90.02670 * 8 7 5 10 10 O 1.21281 * 120.00123 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00324 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00250 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.50259 * 35.05767 * 12 11 9 14 14 C 1.53199 * 109.49552 * 274.99568 * 12 11 9 15 15 N 1.46922 * 108.77621 * 185.38305 * 14 12 11 16 16 C 1.36941 * 120.62847 * 233.58668 * 15 14 12 17 17 H 1.08001 * 119.99840 * 27.69799 * 16 15 14 18 18 C 1.38808 * 119.99743 * 207.69307 * 16 15 14 19 19 N 1.31615 * 119.99919 * 17.36296 * 18 16 15 20 20 Si 1.86803 * 119.99890 * 197.35495 * 18 16 15 21 21 H 1.48497 * 109.46802 * 90.00462 * 20 18 16 22 22 H 1.48504 * 109.47224 * 210.00444 * 20 18 16 23 23 H 1.48498 * 109.47058 * 330.00637 * 20 18 16 24 24 C 1.46926 * 118.73983 * 53.60924 * 15 14 12 25 25 C 1.53195 * 108.77331 * 306.38958 * 24 15 14 26 26 C 1.53037 * 109.52401 * 155.14630 * 12 11 9 27 27 H 1.08988 * 109.46531 * 61.32013 * 26 12 11 28 28 C 1.53004 * 109.45675 * 301.34657 * 26 12 11 29 29 H 1.09001 * 109.47511 * 270.24752 * 1 2 3 30 30 H 1.09005 * 109.47209 * 30.24919 * 1 2 3 31 31 H 1.09005 * 109.47344 * 150.24447 * 1 2 3 32 32 H 1.08001 * 127.33291 * 359.93281 * 3 2 1 33 33 H 1.09001 * 109.47309 * 330.02538 * 8 7 5 34 34 H 1.09000 * 109.46977 * 210.02115 * 8 7 5 35 35 H 0.97003 * 119.99136 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.58379 * 65.59297 * 14 12 11 37 37 H 1.08999 * 109.58473 * 305.17455 * 14 12 11 38 38 H 0.97007 * 119.99487 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.58752 * 66.17664 * 24 15 14 40 40 H 1.08998 * 109.58713 * 186.60952 * 24 15 14 41 41 H 1.09001 * 109.49505 * 174.58838 * 25 24 15 42 42 H 1.08999 * 109.49998 * 294.68729 * 25 24 15 43 43 H 1.09003 * 109.46940 * 60.00525 * 28 26 12 44 44 H 1.09001 * 109.47111 * 180.02562 * 28 26 12 45 45 H 1.09001 * 109.47439 * 300.00169 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9033 0.6303 -0.0057 5 6 3.5606 -1.0573 -0.0006 6 8 4.3672 -1.9703 -0.0022 7 7 2.2221 -1.1604 0.0056 8 6 1.5576 -2.4660 0.0108 9 6 1.3356 -2.9110 1.4334 10 8 1.6972 -2.2071 2.3524 11 7 0.7360 -4.0917 1.6844 12 6 0.5196 -4.5240 3.0674 13 1 0.3001 -3.6565 3.6897 14 6 1.7805 -5.2210 3.5884 15 7 1.5036 -5.7611 4.9264 16 6 2.3148 -5.4514 5.9853 17 1 2.8587 -4.5184 5.9941 18 6 2.4378 -6.3366 7.0474 19 7 2.0693 -7.5919 6.9039 20 14 3.1264 -5.7461 8.6804 21 1 2.0167 -5.2589 9.5384 22 1 3.8211 -6.8691 9.3598 23 1 4.0890 -4.6409 8.4411 24 6 0.3403 -6.6402 5.1065 25 6 -0.9044 -5.9273 4.5686 26 6 -0.6570 -5.5012 3.1196 27 1 -0.4265 -6.3797 2.5172 28 6 -1.9106 -4.8193 2.5678 29 1 -0.3634 0.0044 1.0276 30 1 -0.3634 0.8878 -0.5177 31 1 -0.3634 -0.8922 -0.5100 32 1 1.8152 2.1367 -0.0010 33 1 2.1839 -3.1945 -0.5042 34 1 0.5975 -2.3871 -0.4992 35 1 0.4471 -4.6548 0.9493 36 1 2.5978 -4.5022 3.6463 37 1 2.0532 -6.0339 2.9153 38 1 2.1556 -8.2106 7.6461 39 1 0.4954 -7.5688 4.5573 40 1 0.2073 -6.8577 6.1663 41 1 -1.7573 -6.6049 4.6079 42 1 -1.1106 -5.0465 5.1767 43 1 -1.7350 -4.5168 1.5354 44 1 -2.7490 -5.5149 2.6053 45 1 -2.1411 -3.9403 3.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968632560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -14.264735 kcal Electronic energy + Delta-G solvation = -28121.151031 eV Core-core repulsion = 24266.375551 eV Total energy + Delta-G solvation = -3854.775480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37313 -39.54430 -37.79166 -37.49849 -34.54565 -33.16239 -32.68509 -31.13911 -30.61122 -28.97112 -27.50850 -26.62366 -24.20091 -23.87131 -22.44917 -21.20621 -20.89498 -20.20078 -19.41631 -18.24229 -17.57796 -17.34754 -16.78879 -15.81280 -15.72447 -15.22230 -15.01141 -14.69641 -14.39989 -14.00995 -13.93669 -13.81887 -13.79191 -13.53188 -13.44137 -13.25814 -12.86973 -12.51789 -12.29565 -12.05577 -11.78823 -11.68890 -11.54650 -11.32233 -11.05818 -10.81154 -10.70590 -10.31131 -10.30066 -10.20221 -10.16418 -9.89450 -9.78998 -9.68351 -9.39682 -8.89611 -8.41079 -8.08444 -6.68247 -5.78066 -3.20190 0.81710 1.24578 1.62910 1.98954 2.50413 2.59126 3.25487 3.41213 3.47639 3.50955 4.19414 4.41372 4.50635 4.63657 4.72519 4.80528 5.04971 5.12424 5.16423 5.21940 5.26551 5.33710 5.39985 5.43935 5.57908 5.81353 5.87251 5.88586 6.00093 6.10599 6.17325 6.21260 6.48787 6.50284 6.58499 6.61452 6.68649 6.79746 6.95717 7.17307 7.33355 7.57031 7.63191 7.84348 8.24480 8.46248 9.22713 9.84517 10.39735 11.30717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.003233 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.857048 B = 8658.168885 C = 9958.875713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.112 3.888 3 C -0.241 4.241 4 S 0.004 5.996 5 C 0.487 3.513 6 O -0.468 6.468 7 N -0.516 5.516 8 C 0.079 3.921 9 C 0.494 3.506 10 O -0.520 6.520 11 N -0.715 5.715 12 C 0.134 3.866 13 H 0.086 0.914 14 C 0.141 3.859 15 N -0.587 5.587 16 C -0.251 4.251 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.167 3.833 25 C -0.133 4.133 26 C -0.091 4.091 27 H 0.068 0.932 28 C -0.143 4.143 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.191 0.809 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.395 0.605 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.253 0.747 39 H 0.019 0.981 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 13.338 -19.082 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.379 4.379 4 S 0.247 5.753 5 C 0.169 3.831 6 O -0.346 6.346 7 N -0.236 5.236 8 C -0.051 4.051 9 C 0.277 3.723 10 O -0.395 6.395 11 N -0.366 5.366 12 C 0.029 3.971 13 H 0.104 0.896 14 C 0.013 3.987 15 N -0.309 5.309 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.041 3.959 25 C -0.173 4.173 26 C -0.110 4.110 27 H 0.086 0.914 28 C -0.200 4.200 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.208 0.792 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.229 0.771 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.477 13.789 -18.265 24.076 hybrid contribution -0.985 -0.873 0.554 1.428 sum -8.462 12.916 -17.711 23.497 Atomic orbital electron populations 1.20799 0.86762 1.04084 1.04361 1.19347 0.95710 0.84804 1.00041 1.24811 0.93270 1.01167 1.18695 1.85095 1.08427 1.00862 1.80966 1.21552 0.83503 0.95851 0.82191 1.90989 1.48506 1.42402 1.52722 1.45582 1.06311 1.06579 1.65172 1.21758 1.01053 0.85333 0.96942 1.20584 0.78675 0.82193 0.90801 1.90790 1.48911 1.54076 1.45679 1.46050 1.60673 1.19992 1.09915 1.21802 0.97258 0.97885 0.80149 0.89572 1.21185 0.93926 0.95595 0.87953 1.43997 1.27899 1.55910 1.03143 1.19240 1.22204 1.00221 0.96402 0.91570 1.25008 1.00059 0.94586 0.99849 1.70040 1.51964 1.02066 1.30777 0.86270 0.78672 0.77795 0.83999 1.21385 1.21730 1.20339 1.20851 0.83011 0.90358 1.01643 1.22251 1.00416 1.00795 0.93847 1.21310 0.93559 0.97482 0.98660 0.91401 1.21850 0.97691 1.00524 0.99983 0.89299 0.89056 0.90777 0.79156 0.85888 0.86124 0.77098 0.92444 0.96468 0.93656 0.96323 0.89196 0.92660 0.92436 0.93490 0.92900 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 9.69 36.00 0.35 -0.22 16 2 C 0.11 1.04 6.59 -82.51 -0.54 0.49 16 3 C -0.24 -2.11 11.25 28.83 0.32 -1.79 16 4 S 0.00 0.04 22.96 -107.50 -2.47 -2.43 16 5 C 0.49 7.22 8.27 53.82 0.45 7.67 16 6 O -0.47 -8.53 17.55 5.08 0.09 -8.44 16 7 N -0.52 -6.14 2.09 -118.57 -0.25 -6.38 16 8 C 0.08 0.78 5.75 -5.20 -0.03 0.75 16 9 C 0.49 7.01 7.86 -10.98 -0.09 6.93 16 10 O -0.52 -10.06 16.10 5.56 0.09 -9.97 16 11 N -0.71 -9.30 4.37 -53.69 -0.23 -9.53 16 12 C 0.13 2.31 2.06 -67.81 -0.14 2.17 16 13 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 14 C 0.14 3.12 6.09 -3.71 -0.02 3.09 16 15 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 16 C -0.25 -7.19 9.59 -15.06 -0.14 -7.33 16 17 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 18 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 19 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 20 Si 0.90 22.43 29.59 -169.99 -5.03 17.40 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 25 C -0.13 -2.41 5.36 -26.61 -0.14 -2.55 16 26 C -0.09 -1.37 2.27 -90.58 -0.21 -1.58 16 27 H 0.07 1.00 8.14 -51.94 -0.42 0.58 16 28 C -0.14 -1.66 9.02 37.16 0.34 -1.32 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.29 8.10 -51.93 -0.42 -0.13 16 31 H 0.07 0.31 6.18 -51.93 -0.32 -0.01 16 32 H 0.19 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.15 7.80 -51.93 -0.41 0.74 16 34 H 0.12 0.65 6.11 -51.93 -0.32 0.34 16 35 H 0.40 3.69 8.30 -40.82 -0.34 3.35 16 36 H 0.06 1.41 7.93 -51.93 -0.41 0.99 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.44 7.36 -51.93 -0.38 0.06 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -36.27 376.99 -8.64 -44.91 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.66 Total: -0.04 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 0.03 Total: 10.21 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.38 Total: -57.32 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.27 -8.64 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968632560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.643 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds