Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32570 * 121.64992 * 2 1 4 4 S 1.77221 * 105.32111 * 180.19201 * 3 2 1 5 5 C 1.72204 * 94.84872 * 359.76138 * 4 3 2 6 6 O 1.21826 * 127.06057 * 179.97438 * 5 4 3 7 7 N 1.34245 * 105.88415 * 359.97438 * 5 4 3 8 8 C 1.46498 * 121.37821 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47190 * 90.02670 * 8 7 5 10 10 O 1.21281 * 120.00123 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00324 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00250 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.50259 * 35.05767 * 12 11 9 14 14 C 1.53199 * 109.49552 * 274.99568 * 12 11 9 15 15 N 1.46922 * 108.77621 * 185.38305 * 14 12 11 16 16 C 1.36941 * 120.62847 * 233.58668 * 15 14 12 17 17 H 1.08001 * 119.99840 * 27.69799 * 16 15 14 18 18 C 1.38808 * 119.99743 * 207.69307 * 16 15 14 19 19 N 1.31615 * 119.99919 * 17.36296 * 18 16 15 20 20 Si 1.86803 * 119.99890 * 197.35495 * 18 16 15 21 21 H 1.48497 * 109.46802 * 90.00462 * 20 18 16 22 22 H 1.48504 * 109.47224 * 210.00444 * 20 18 16 23 23 H 1.48498 * 109.47058 * 330.00637 * 20 18 16 24 24 C 1.46926 * 118.73983 * 53.60924 * 15 14 12 25 25 C 1.53195 * 108.77331 * 306.38958 * 24 15 14 26 26 C 1.53037 * 109.52401 * 155.14630 * 12 11 9 27 27 H 1.08988 * 109.46531 * 61.32013 * 26 12 11 28 28 C 1.53004 * 109.45675 * 301.34657 * 26 12 11 29 29 H 1.09001 * 109.47511 * 270.24752 * 1 2 3 30 30 H 1.09005 * 109.47209 * 30.24919 * 1 2 3 31 31 H 1.09005 * 109.47344 * 150.24447 * 1 2 3 32 32 H 1.08001 * 127.33291 * 359.93281 * 3 2 1 33 33 H 1.09001 * 109.47309 * 330.02538 * 8 7 5 34 34 H 1.09000 * 109.46977 * 210.02115 * 8 7 5 35 35 H 0.97003 * 119.99136 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.58379 * 65.59297 * 14 12 11 37 37 H 1.08999 * 109.58473 * 305.17455 * 14 12 11 38 38 H 0.97007 * 119.99487 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.58752 * 66.17664 * 24 15 14 40 40 H 1.08998 * 109.58713 * 186.60952 * 24 15 14 41 41 H 1.09001 * 109.49505 * 174.58838 * 25 24 15 42 42 H 1.08999 * 109.49998 * 294.68729 * 25 24 15 43 43 H 1.09003 * 109.46940 * 60.00525 * 28 26 12 44 44 H 1.09001 * 109.47111 * 180.02562 * 28 26 12 45 45 H 1.09001 * 109.47439 * 300.00169 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9033 0.6303 -0.0057 5 6 3.5606 -1.0573 -0.0006 6 8 4.3672 -1.9703 -0.0022 7 7 2.2221 -1.1604 0.0056 8 6 1.5576 -2.4660 0.0108 9 6 1.3356 -2.9110 1.4334 10 8 1.6972 -2.2071 2.3524 11 7 0.7360 -4.0917 1.6844 12 6 0.5196 -4.5240 3.0674 13 1 0.3001 -3.6565 3.6897 14 6 1.7805 -5.2210 3.5884 15 7 1.5036 -5.7611 4.9264 16 6 2.3148 -5.4514 5.9853 17 1 2.8587 -4.5184 5.9941 18 6 2.4378 -6.3366 7.0474 19 7 2.0693 -7.5919 6.9039 20 14 3.1264 -5.7461 8.6804 21 1 2.0167 -5.2589 9.5384 22 1 3.8211 -6.8691 9.3598 23 1 4.0890 -4.6409 8.4411 24 6 0.3403 -6.6402 5.1065 25 6 -0.9044 -5.9273 4.5686 26 6 -0.6570 -5.5012 3.1196 27 1 -0.4265 -6.3797 2.5172 28 6 -1.9106 -4.8193 2.5678 29 1 -0.3634 0.0044 1.0276 30 1 -0.3634 0.8878 -0.5177 31 1 -0.3634 -0.8922 -0.5100 32 1 1.8152 2.1367 -0.0010 33 1 2.1839 -3.1945 -0.5042 34 1 0.5975 -2.3871 -0.4992 35 1 0.4471 -4.6548 0.9493 36 1 2.5978 -4.5022 3.6463 37 1 2.0532 -6.0339 2.9153 38 1 2.1556 -8.2106 7.6461 39 1 0.4954 -7.5688 4.5573 40 1 0.2073 -6.8577 6.1663 41 1 -1.7573 -6.6049 4.6079 42 1 -1.1106 -5.0465 5.1767 43 1 -1.7350 -4.5168 1.5354 44 1 -2.7490 -5.5149 2.6053 45 1 -2.1411 -3.9403 3.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968632560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -40.092642 kcal Electronic energy + Delta-G solvation = -28122.271013 eV Core-core repulsion = 24266.375551 eV Total energy + Delta-G solvation = -3855.895462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31978 -40.81742 -39.18087 -38.63544 -36.23998 -34.58345 -33.51855 -33.07484 -31.56137 -30.31728 -28.99235 -27.57407 -25.91795 -24.95451 -23.87230 -22.74433 -22.05455 -21.41466 -20.82916 -19.09072 -18.82451 -18.62714 -18.30593 -17.19190 -16.86556 -16.63895 -16.36517 -16.02500 -15.60472 -15.42751 -15.27812 -15.05123 -14.96859 -14.59883 -14.55237 -14.37542 -14.18549 -13.68101 -13.48848 -13.23132 -13.17477 -12.94657 -12.79262 -12.66329 -12.56984 -12.32711 -12.11627 -12.06686 -12.00386 -11.69253 -11.51579 -11.31382 -11.28613 -11.20201 -10.64764 -10.50072 -10.18002 -8.97351 -8.75114 -7.96146 -5.41842 -0.15276 0.39136 0.83898 1.05507 1.40137 1.40558 1.46660 1.50968 1.65484 2.15946 2.46016 3.17465 3.47339 3.58884 3.71228 3.76809 3.80500 3.99637 4.03289 4.10325 4.25291 4.40450 4.48286 4.56255 4.64538 4.67707 4.75673 4.75829 4.88526 4.93778 4.94924 5.03499 5.06331 5.17500 5.22415 5.28039 5.41433 5.46894 5.51870 5.58572 5.67024 5.74082 6.17657 6.31175 6.49285 7.07636 7.18224 7.76906 8.26162 9.09239 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.003233 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.857048 B = 8658.168885 C = 9958.875713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.097 3.903 3 C -0.228 4.228 4 S -0.011 6.011 5 C 0.464 3.536 6 O -0.523 6.523 7 N -0.517 5.517 8 C 0.083 3.917 9 C 0.493 3.507 10 O -0.577 6.577 11 N -0.698 5.698 12 C 0.155 3.845 13 H 0.057 0.943 14 C 0.143 3.857 15 N -0.606 5.606 16 C -0.272 4.272 17 H 0.047 0.953 18 C -0.040 4.040 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.123 4.123 26 C -0.082 4.082 27 H 0.081 0.919 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.230 0.770 33 H 0.131 0.869 34 H 0.179 0.821 35 H 0.419 0.581 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.004 0.996 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 14.551 -21.284 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 C -0.364 4.364 4 S 0.232 5.768 5 C 0.147 3.853 6 O -0.407 6.407 7 N -0.236 5.236 8 C -0.046 4.046 9 C 0.278 3.722 10 O -0.456 6.456 11 N -0.351 5.351 12 C 0.048 3.952 13 H 0.075 0.925 14 C 0.016 3.984 15 N -0.330 5.330 16 C -0.402 4.402 17 H 0.065 0.935 18 C -0.236 4.236 19 N -0.572 5.572 20 Si 0.792 3.208 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.204 1.204 24 C 0.047 3.953 25 C -0.162 4.162 26 C -0.101 4.101 27 H 0.099 0.901 28 C -0.190 4.190 29 H 0.097 0.903 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.246 0.754 33 H 0.149 0.851 34 H 0.196 0.804 35 H 0.257 0.743 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.831 15.019 -20.532 27.649 hybrid contribution 0.082 -1.193 1.230 1.715 sum -10.750 13.826 -19.302 26.063 Atomic orbital electron populations 1.20955 0.83498 1.06738 1.04410 1.20062 0.97599 0.83860 0.99738 1.25405 0.90471 1.02865 1.17690 1.85089 1.11853 0.99418 1.80407 1.21990 0.84428 0.96366 0.82475 1.90939 1.50108 1.44251 1.55419 1.45715 1.05628 1.08174 1.64106 1.21983 1.03831 0.84845 0.93916 1.21380 0.77066 0.81590 0.92131 1.90776 1.51063 1.55828 1.47932 1.45761 1.60287 1.20149 1.08870 1.21202 0.95455 0.96709 0.81853 0.92483 1.21226 0.95567 0.94793 0.86860 1.44214 1.28518 1.56557 1.03745 1.19355 1.22965 0.99747 0.98167 0.93507 1.25692 1.00666 0.94652 1.02620 1.70163 1.52769 1.02794 1.31491 0.85323 0.78131 0.77237 0.80097 1.20427 1.21203 1.20445 1.20735 0.84712 0.90243 0.99646 1.22083 0.98321 1.00263 0.95580 1.21240 0.94402 0.97558 0.96931 0.90100 1.21768 0.95782 1.00211 1.01265 0.90302 0.85930 0.88699 0.75398 0.85134 0.80393 0.74271 0.96317 0.96437 0.93720 0.97805 0.92728 0.89680 0.93566 0.90422 0.90966 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 9.69 71.23 0.69 0.02 16 2 C 0.10 1.53 6.59 40.71 0.27 1.80 16 3 C -0.23 -3.40 11.25 66.67 0.75 -2.65 16 4 S -0.01 -0.25 22.96 -56.49 -1.30 -1.55 16 5 C 0.46 14.07 8.27 129.87 1.07 15.15 16 6 O -0.52 -20.23 17.55 -4.75 -0.08 -20.31 16 7 N -0.52 -11.59 2.09 -647.52 -1.35 -12.95 16 8 C 0.08 1.44 5.75 85.63 0.49 1.93 16 9 C 0.49 13.47 7.86 87.66 0.69 14.16 16 10 O -0.58 -22.88 16.10 -3.03 -0.05 -22.92 16 11 N -0.70 -16.88 4.37 -442.16 -1.93 -18.81 16 12 C 0.15 5.27 2.06 45.07 0.09 5.36 16 13 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 14 C 0.14 6.58 6.09 86.37 0.53 7.10 16 15 N -0.61 -32.50 2.99 -699.10 -2.09 -34.60 16 16 C -0.27 -16.39 9.59 84.03 0.81 -15.58 16 17 H 0.05 2.93 7.89 -2.91 -0.02 2.90 16 18 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 19 N -0.93 -56.02 11.19 21.65 0.24 -55.78 16 20 Si 0.96 47.48 29.59 68.60 2.03 49.51 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 24 C 0.17 8.27 5.31 86.36 0.46 8.73 16 25 C -0.12 -4.32 5.36 30.67 0.16 -4.16 16 26 C -0.08 -2.29 2.27 -10.76 -0.02 -2.31 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 C -0.13 -2.49 9.02 71.98 0.65 -1.84 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.12 0.11 8.10 -2.38 -0.02 0.09 16 31 H 0.09 0.25 6.18 -2.38 -0.01 0.24 16 32 H 0.23 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.13 2.18 7.80 -2.39 -0.02 2.16 16 34 H 0.18 0.98 6.11 -2.39 -0.01 0.96 16 35 H 0.42 6.25 8.30 -92.71 -0.77 5.48 16 36 H 0.02 0.97 7.93 -2.39 -0.02 0.95 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.05 2.99 6.04 -2.39 -0.01 2.98 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.01 7.36 -2.39 -0.02 0.99 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -88.43 376.99 2.76 -85.67 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.24 Total: 5.96 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 7.05 Total: 25.77 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.14 Total: -122.13 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.13 Total: -43.24 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -1.30 Total: -1.55 kcal Total: -88.43 2.76 -85.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968632560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.582 kcal (2) G-P(sol) polarization free energy of solvation -88.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds