Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32569 * 121.64177 * 2 1 4 4 S 1.77223 * 105.31744 * 179.97438 * 3 2 1 5 5 C 1.72211 * 94.84947 * 359.97438 * 4 3 2 6 6 O 1.21818 * 127.05934 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88265 * 359.76251 * 5 4 3 8 8 C 1.46494 * 121.38275 * 180.21850 * 7 5 4 9 9 C 1.52995 * 109.47324 * 270.22305 * 8 7 5 10 10 C 1.50708 * 109.47072 * 179.97438 * 9 8 7 11 11 O 1.21270 * 119.99817 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99889 * 180.02562 * 10 9 8 13 13 C 1.47434 * 125.64850 * 0.02562 * 12 10 9 14 14 C 1.54904 * 104.82876 * 204.09108 * 13 12 10 15 15 C 1.55155 * 101.58608 * 322.98983 * 14 13 12 16 16 H 1.08999 * 110.71955 * 277.14156 * 15 14 13 17 17 N 1.46503 * 110.72252 * 153.86695 * 15 14 13 18 18 C 1.36931 * 120.00256 * 86.45254 * 17 15 14 19 19 H 1.08004 * 119.99851 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00291 * 180.02562 * 18 17 15 21 21 N 1.31614 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47191 * 119.99674 * 22 20 18 25 25 H 1.48501 * 109.47147 * 239.99988 * 22 20 18 26 26 C 1.47024 * 125.64788 * 179.71286 * 12 10 9 27 27 H 1.09004 * 109.87897 * 59.56510 * 26 12 10 28 28 C 1.52995 * 109.88363 * 298.39519 * 26 12 10 29 29 H 1.08995 * 109.47411 * 0.02626 * 1 2 3 30 30 H 1.08998 * 109.46596 * 120.02565 * 1 2 3 31 31 H 1.09004 * 109.46950 * 240.02385 * 1 2 3 32 32 H 1.08004 * 127.33809 * 359.95205 * 3 2 1 33 33 H 1.09001 * 109.46798 * 30.22302 * 8 7 5 34 34 H 1.08999 * 109.47280 * 150.22315 * 8 7 5 35 35 H 1.09001 * 109.47180 * 299.99763 * 9 8 7 36 36 H 1.09005 * 109.47518 * 60.00172 * 9 8 7 37 37 H 1.08991 * 110.36675 * 322.92945 * 13 12 10 38 38 H 1.08996 * 110.36676 * 85.14844 * 13 12 10 39 39 H 1.09007 * 111.00800 * 81.06776 * 14 13 12 40 40 H 1.09000 * 111.00423 * 204.87476 * 14 13 12 41 41 H 0.97001 * 119.99684 * 266.45781 * 17 15 14 42 42 H 0.97004 * 120.00182 * 179.97438 * 21 20 18 43 43 H 1.09006 * 109.47090 * 61.45449 * 28 26 12 44 44 H 1.09002 * 109.47065 * 181.44822 * 28 26 12 45 45 H 1.08993 * 109.47352 * 301.45146 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6305 0.0008 5 6 3.5607 -1.0572 0.0018 6 8 4.3674 -1.9700 0.0030 7 7 2.2223 -1.1604 0.0069 8 6 1.5578 -2.4659 0.0140 9 6 1.3264 -2.9283 -1.4260 10 6 0.6433 -4.2717 -1.4186 11 8 0.3692 -4.8067 -0.3654 12 7 0.3382 -4.8788 -2.5825 13 6 0.6145 -4.3447 -3.9286 14 6 -0.4206 -5.0369 -4.8500 15 6 -0.4887 -6.4576 -4.2300 16 1 0.3265 -7.0793 -4.6001 17 7 -1.7851 -7.0819 -4.5057 18 6 -1.9785 -7.7716 -5.6727 19 1 -1.1753 -7.8556 -6.3898 20 6 -3.2070 -8.3627 -5.9342 21 7 -4.1857 -8.2607 -5.0601 22 14 -3.4707 -9.3041 -7.5259 23 1 -2.2241 -9.2720 -8.3323 24 1 -3.8237 -10.7127 -7.2152 25 1 -4.5740 -8.6755 -8.2958 26 6 -0.3195 -6.1865 -2.7201 27 1 -1.2969 -6.1624 -2.2379 28 6 0.5495 -7.2752 -2.0873 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5142 -0.8898 31 1 -0.3633 -0.5135 0.8902 32 1 1.8151 2.1368 -0.0007 33 1 2.1862 -3.1906 0.5317 34 1 0.5998 -2.3833 0.5274 35 1 0.6979 -2.2036 -1.9437 36 1 2.2843 -3.0110 -1.9395 37 1 0.4733 -3.2640 -3.9442 38 1 1.6286 -4.5986 -4.2367 39 1 -1.3888 -4.5391 -4.7934 40 1 -0.0634 -5.0758 -5.8790 41 1 -2.5064 -7.0067 -3.8615 42 1 -5.0443 -8.6734 -5.2429 43 1 0.6733 -7.0691 -1.0241 44 1 0.0681 -8.2447 -2.2157 45 1 1.5260 -7.2876 -2.5712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986367264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -24.283789 kcal Electronic energy + Delta-G solvation = -27233.758507 eV Core-core repulsion = 23378.548568 eV Total energy + Delta-G solvation = -3855.209939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.40780 -40.03886 -37.91667 -37.58548 -34.20996 -33.73782 -31.99409 -31.34499 -30.91510 -29.35144 -28.24069 -25.38066 -25.26570 -23.65720 -23.07287 -22.28696 -20.67006 -20.13865 -18.92923 -18.40600 -17.67547 -17.27647 -16.61486 -16.52286 -16.16935 -15.36926 -15.25971 -14.88569 -14.69854 -14.20188 -14.07474 -13.96293 -13.63358 -13.51708 -13.42088 -13.19349 -12.98443 -12.75849 -12.54695 -12.21616 -11.95122 -11.78950 -11.67715 -11.55072 -11.49665 -11.22901 -11.09339 -10.89884 -10.65417 -10.37008 -10.29054 -10.07852 -10.01145 -9.83273 -9.64367 -9.00846 -8.51646 -8.30564 -7.09084 -5.86948 -3.17583 0.62840 1.02386 1.44853 1.81148 2.36262 2.61903 3.06355 3.37195 3.43230 3.45332 4.08077 4.40451 4.42126 4.49945 4.52683 4.64416 4.86746 4.94506 4.97439 5.07254 5.14757 5.17940 5.24907 5.26947 5.35695 5.41466 5.51933 5.56212 5.60444 5.71700 5.77387 5.86814 6.02316 6.06459 6.23101 6.38234 6.38607 6.51245 6.55172 6.63804 6.85380 6.99164 7.61114 7.63588 8.17138 8.30345 9.42042 9.95844 10.30582 11.35258 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.002161 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.938037 B =12952.377777 C =13124.897168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.105 3.895 3 C -0.240 4.240 4 S -0.005 6.005 5 C 0.480 3.520 6 O -0.469 6.469 7 N -0.533 5.533 8 C 0.118 3.882 9 C -0.153 4.153 10 C 0.533 3.467 11 O -0.543 6.543 12 N -0.606 5.606 13 C 0.097 3.903 14 C -0.155 4.155 15 C 0.176 3.824 16 H 0.065 0.935 17 N -0.715 5.715 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.127 3.873 27 H 0.078 0.922 28 C -0.155 4.155 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.192 0.808 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.538 20.797 9.381 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.006 4.006 3 C -0.378 4.378 4 S 0.238 5.762 5 C 0.162 3.838 6 O -0.348 6.348 7 N -0.254 5.254 8 C -0.007 4.007 9 C -0.194 4.194 10 C 0.320 3.680 11 O -0.422 6.422 12 N -0.340 5.340 13 C -0.026 4.026 14 C -0.196 4.196 15 C 0.064 3.936 16 H 0.083 0.917 17 N -0.355 5.355 18 C -0.374 4.374 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.024 3.976 27 H 0.096 0.904 28 C -0.213 4.213 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.209 0.791 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.098 20.489 9.853 26.238 hybrid contribution -1.626 -1.084 -0.863 2.136 sum 11.471 19.405 8.990 24.269 Atomic orbital electron populations 1.20807 0.86451 1.04913 1.03997 1.19515 0.95970 0.84855 1.00242 1.24922 0.93081 1.01286 1.18533 1.85187 1.08662 1.01332 1.81015 1.21628 0.83807 0.95695 0.82714 1.90990 1.48592 1.42373 1.52884 1.46158 1.06376 1.07909 1.64916 1.21624 0.99967 0.82184 0.96947 1.21949 1.02912 0.96038 0.98469 1.19788 0.79122 0.86263 0.82821 1.90705 1.54682 1.66588 1.30198 1.48573 1.58958 1.20848 1.05580 1.22421 0.99708 0.98246 0.82264 1.23565 0.98181 0.99364 0.98517 1.21238 0.91000 0.91896 0.89421 0.91748 1.42342 1.08633 1.62340 1.22193 1.19236 0.96959 1.25628 0.95604 0.90936 1.24770 0.96229 1.01162 0.98502 1.69671 1.03485 1.49109 1.35453 0.86109 0.77642 0.79496 0.82844 1.20479 1.21776 1.21812 1.21926 0.96082 0.81318 0.98297 0.90353 1.22045 0.99330 0.98785 1.01124 0.89004 0.89914 0.89824 0.79120 0.87740 0.87824 0.88432 0.88373 0.91413 0.91573 0.90570 0.90481 0.77989 0.93391 0.91952 0.91068 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 9.01 36.01 0.32 -0.11 16 2 C 0.11 0.71 6.59 -82.51 -0.54 0.17 16 3 C -0.24 -1.46 11.18 28.83 0.32 -1.14 16 4 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16 5 C 0.48 5.56 8.27 53.82 0.45 6.01 16 6 O -0.47 -7.04 17.55 5.08 0.09 -6.95 16 7 N -0.53 -4.97 2.60 -117.29 -0.31 -5.27 16 8 C 0.12 1.16 4.55 -4.05 -0.02 1.14 16 9 C -0.15 -1.54 5.03 -27.88 -0.14 -1.68 16 10 C 0.53 7.42 7.64 -10.98 -0.08 7.34 16 11 O -0.54 -9.23 15.03 5.57 0.08 -9.15 16 12 N -0.61 -8.73 3.06 -163.01 -0.50 -9.23 16 13 C 0.10 1.19 6.69 -2.53 -0.02 1.17 16 14 C -0.15 -2.40 6.77 -24.59 -0.17 -2.56 16 15 C 0.18 3.25 3.12 -66.09 -0.21 3.05 16 16 H 0.06 1.21 7.82 -51.93 -0.41 0.80 16 17 N -0.71 -16.87 5.25 -51.65 -0.27 -17.14 16 18 C -0.24 -6.39 9.98 -15.06 -0.15 -6.54 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 22 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.13 2.16 3.21 -66.95 -0.21 1.95 16 27 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 28 C -0.15 -2.54 9.11 37.15 0.34 -2.20 16 29 H 0.09 0.20 7.99 -51.93 -0.41 -0.21 16 30 H 0.08 0.36 7.60 -51.93 -0.39 -0.04 16 31 H 0.08 0.35 7.62 -51.93 -0.40 -0.05 16 32 H 0.19 0.59 8.06 -52.48 -0.42 0.16 16 33 H 0.10 1.24 7.76 -51.93 -0.40 0.83 16 34 H 0.10 0.90 6.77 -51.93 -0.35 0.55 16 35 H 0.10 0.78 7.31 -51.93 -0.38 0.40 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.39 9.84 7.51 -40.82 -0.31 9.54 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.06 1.06 6.89 -51.93 -0.36 0.70 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -32.48 382.52 -8.82 -41.29 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.70 Total: 6.83 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.21 Total: 6.22 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.35 Total: -58.10 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.17 Total: -16.10 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.48 -8.82 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986367264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.010 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds