Wall clock time and date at job start Sat Apr 11 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32569 * 121.64177 * 2 1 4 4 S 1.77223 * 105.31744 * 179.97438 * 3 2 1 5 5 C 1.72211 * 94.84947 * 359.97438 * 4 3 2 6 6 O 1.21818 * 127.05934 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88265 * 359.76251 * 5 4 3 8 8 C 1.46494 * 121.38275 * 180.21850 * 7 5 4 9 9 C 1.52995 * 109.47324 * 270.22305 * 8 7 5 10 10 C 1.50708 * 109.47072 * 179.97438 * 9 8 7 11 11 O 1.21270 * 119.99817 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99889 * 180.02562 * 10 9 8 13 13 C 1.47434 * 125.64850 * 0.02562 * 12 10 9 14 14 C 1.54904 * 104.82876 * 204.09108 * 13 12 10 15 15 C 1.55155 * 101.58608 * 322.98983 * 14 13 12 16 16 H 1.08999 * 110.71955 * 277.14156 * 15 14 13 17 17 N 1.46503 * 110.72252 * 153.86695 * 15 14 13 18 18 C 1.36931 * 120.00256 * 86.45254 * 17 15 14 19 19 H 1.08004 * 119.99851 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00291 * 180.02562 * 18 17 15 21 21 N 1.31614 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47191 * 119.99674 * 22 20 18 25 25 H 1.48501 * 109.47147 * 239.99988 * 22 20 18 26 26 C 1.47024 * 125.64788 * 179.71286 * 12 10 9 27 27 H 1.09004 * 109.87897 * 59.56510 * 26 12 10 28 28 C 1.52995 * 109.88363 * 298.39519 * 26 12 10 29 29 H 1.08995 * 109.47411 * 0.02626 * 1 2 3 30 30 H 1.08998 * 109.46596 * 120.02565 * 1 2 3 31 31 H 1.09004 * 109.46950 * 240.02385 * 1 2 3 32 32 H 1.08004 * 127.33809 * 359.95205 * 3 2 1 33 33 H 1.09001 * 109.46798 * 30.22302 * 8 7 5 34 34 H 1.08999 * 109.47280 * 150.22315 * 8 7 5 35 35 H 1.09001 * 109.47180 * 299.99763 * 9 8 7 36 36 H 1.09005 * 109.47518 * 60.00172 * 9 8 7 37 37 H 1.08991 * 110.36675 * 322.92945 * 13 12 10 38 38 H 1.08996 * 110.36676 * 85.14844 * 13 12 10 39 39 H 1.09007 * 111.00800 * 81.06776 * 14 13 12 40 40 H 1.09000 * 111.00423 * 204.87476 * 14 13 12 41 41 H 0.97001 * 119.99684 * 266.45781 * 17 15 14 42 42 H 0.97004 * 120.00182 * 179.97438 * 21 20 18 43 43 H 1.09006 * 109.47090 * 61.45449 * 28 26 12 44 44 H 1.09002 * 109.47065 * 181.44822 * 28 26 12 45 45 H 1.08993 * 109.47352 * 301.45146 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6305 0.0008 5 6 3.5607 -1.0572 0.0018 6 8 4.3674 -1.9700 0.0030 7 7 2.2223 -1.1604 0.0069 8 6 1.5578 -2.4659 0.0140 9 6 1.3264 -2.9283 -1.4260 10 6 0.6433 -4.2717 -1.4186 11 8 0.3692 -4.8067 -0.3654 12 7 0.3382 -4.8788 -2.5825 13 6 0.6145 -4.3447 -3.9286 14 6 -0.4206 -5.0369 -4.8500 15 6 -0.4887 -6.4576 -4.2300 16 1 0.3265 -7.0793 -4.6001 17 7 -1.7851 -7.0819 -4.5057 18 6 -1.9785 -7.7716 -5.6727 19 1 -1.1753 -7.8556 -6.3898 20 6 -3.2070 -8.3627 -5.9342 21 7 -4.1857 -8.2607 -5.0601 22 14 -3.4707 -9.3041 -7.5259 23 1 -2.2241 -9.2720 -8.3323 24 1 -3.8237 -10.7127 -7.2152 25 1 -4.5740 -8.6755 -8.2958 26 6 -0.3195 -6.1865 -2.7201 27 1 -1.2969 -6.1624 -2.2379 28 6 0.5495 -7.2752 -2.0873 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5142 -0.8898 31 1 -0.3633 -0.5135 0.8902 32 1 1.8151 2.1368 -0.0007 33 1 2.1862 -3.1906 0.5317 34 1 0.5998 -2.3833 0.5274 35 1 0.6979 -2.2036 -1.9437 36 1 2.2843 -3.0110 -1.9395 37 1 0.4733 -3.2640 -3.9442 38 1 1.6286 -4.5986 -4.2367 39 1 -1.3888 -4.5391 -4.7934 40 1 -0.0634 -5.0758 -5.8790 41 1 -2.5064 -7.0067 -3.8615 42 1 -5.0443 -8.6734 -5.2429 43 1 0.6733 -7.0691 -1.0241 44 1 0.0681 -8.2447 -2.2157 45 1 1.5260 -7.2876 -2.5712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986367264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:03 Heat of formation + Delta-G solvation = -45.337669 kcal Electronic energy + Delta-G solvation = -27234.671472 eV Core-core repulsion = 23378.548568 eV Total energy + Delta-G solvation = -3856.122903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15435 -41.21339 -38.96393 -38.65311 -35.93745 -34.55649 -33.40043 -32.46946 -32.01219 -30.81681 -28.93269 -26.87946 -26.17113 -24.87803 -24.36335 -23.37013 -21.69078 -21.26604 -20.13724 -19.15959 -19.03978 -18.55252 -17.65750 -17.50271 -17.19481 -16.58203 -16.41613 -16.08571 -15.64693 -15.42546 -15.21538 -14.82070 -14.67154 -14.64183 -14.44190 -14.30967 -14.16550 -13.65226 -13.58433 -13.30349 -13.14106 -13.12454 -12.94221 -12.69455 -12.55688 -12.45199 -12.30002 -12.15421 -12.07213 -12.06987 -11.72615 -11.55798 -11.22316 -11.01144 -10.90188 -10.58940 -9.72311 -9.03326 -8.96549 -7.94820 -5.24534 -0.11918 0.38624 0.86551 1.10984 1.49004 1.49806 1.51823 1.59275 1.61436 2.00175 2.56826 3.31326 3.40503 3.59419 3.62931 3.67665 3.74263 3.85098 4.01610 4.15678 4.21134 4.23369 4.34108 4.38930 4.41900 4.49693 4.58689 4.63755 4.68117 4.71587 4.73858 4.81300 4.90607 5.01462 5.02167 5.18963 5.22433 5.29899 5.30365 5.44409 5.54789 5.73980 6.23018 6.25878 6.50509 7.04415 7.32625 8.04340 8.28004 9.28814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.002161 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.938037 B =12952.377777 C =13124.897168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.090 3.910 3 C -0.219 4.219 4 S -0.001 6.001 5 C 0.460 3.540 6 O -0.521 6.521 7 N -0.529 5.529 8 C 0.122 3.878 9 C -0.137 4.137 10 C 0.530 3.470 11 O -0.579 6.579 12 N -0.608 5.608 13 C 0.104 3.896 14 C -0.146 4.146 15 C 0.169 3.831 16 H 0.065 0.935 17 N -0.729 5.729 18 C -0.234 4.234 19 H 0.082 0.918 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.298 1.298 25 H -0.295 1.295 26 C 0.134 3.866 27 H 0.050 0.950 28 C -0.146 4.146 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.229 0.771 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.278 23.722 8.314 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.019 4.019 3 C -0.356 4.356 4 S 0.242 5.758 5 C 0.144 3.856 6 O -0.405 6.405 7 N -0.249 5.249 8 C -0.004 4.004 9 C -0.178 4.178 10 C 0.320 3.680 11 O -0.459 6.459 12 N -0.341 5.341 13 C -0.018 4.018 14 C -0.187 4.187 15 C 0.059 3.941 16 H 0.083 0.917 17 N -0.368 5.368 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.225 1.225 25 H -0.222 1.222 26 C 0.030 3.970 27 H 0.068 0.932 28 C -0.204 4.204 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.245 0.755 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.877 23.490 8.766 28.657 hybrid contribution -1.803 -1.876 -0.453 2.641 sum 12.074 21.614 8.313 26.116 Atomic orbital electron populations 1.20930 0.84236 1.06758 1.04069 1.19983 0.97209 0.83954 1.00735 1.25471 0.90739 1.02651 1.16743 1.85202 1.11173 0.99100 1.80279 1.22037 0.84242 0.96403 0.82957 1.90950 1.50000 1.44224 1.55342 1.46163 1.05892 1.08513 1.64349 1.21484 0.99864 0.82203 0.96813 1.21870 1.02977 0.94028 0.98889 1.20456 0.78439 0.87203 0.81930 1.90694 1.56069 1.67692 1.31492 1.48613 1.58762 1.19854 1.06868 1.22544 0.99486 0.99912 0.79867 1.23364 0.98723 0.96909 0.99676 1.21425 0.88589 0.93360 0.90684 0.91661 1.42501 1.10124 1.62884 1.21296 1.19619 0.96775 1.24080 0.96095 0.90030 1.25551 0.96412 1.03126 1.01658 1.69827 1.03781 1.51004 1.37478 0.85100 0.77806 0.77508 0.79487 1.18703 1.22545 1.22204 1.21601 0.95257 0.83186 0.97006 0.93168 1.21943 0.99752 0.98018 1.00674 0.86345 0.89650 0.89862 0.75463 0.90440 0.86630 0.85333 0.88051 0.87810 0.89494 0.92084 0.89427 0.79617 0.94096 0.92797 0.92335 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 9.01 71.24 0.64 0.17 16 2 C 0.09 0.94 6.59 40.71 0.27 1.21 16 3 C -0.22 -1.84 11.18 66.67 0.75 -1.09 16 4 S 0.00 -0.01 22.97 -56.49 -1.30 -1.31 16 5 C 0.46 10.45 8.27 129.87 1.07 11.53 16 6 O -0.52 -16.15 17.55 -4.73 -0.08 -16.24 16 7 N -0.53 -9.04 2.60 -643.45 -1.68 -10.72 16 8 C 0.12 2.29 4.55 86.38 0.39 2.68 16 9 C -0.14 -2.45 5.03 29.85 0.15 -2.30 16 10 C 0.53 14.15 7.64 87.66 0.67 14.82 16 11 O -0.58 -19.78 15.03 -3.00 -0.05 -19.83 16 12 N -0.61 -16.58 3.06 -788.04 -2.41 -19.00 16 13 C 0.10 2.20 6.69 86.85 0.58 2.78 16 14 C -0.15 -4.22 6.77 31.98 0.22 -4.00 16 15 C 0.17 6.15 3.12 46.18 0.14 6.30 16 16 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 17 N -0.73 -34.88 5.25 -317.31 -1.67 -36.54 16 18 C -0.23 -12.28 9.98 84.03 0.84 -11.45 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -58.21 13.06 21.65 0.28 -57.92 16 22 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 C 0.13 4.58 3.21 45.34 0.15 4.72 16 27 H 0.05 2.00 7.69 -2.38 -0.02 1.98 16 28 C -0.15 -4.85 9.11 71.98 0.66 -4.19 16 29 H 0.12 -0.05 7.99 -2.39 -0.02 -0.07 16 30 H 0.08 0.39 7.60 -2.39 -0.02 0.37 16 31 H 0.08 0.44 7.62 -2.39 -0.02 0.42 16 32 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 33 H 0.08 1.90 7.76 -2.39 -0.02 1.88 16 34 H 0.12 1.86 6.77 -2.39 -0.02 1.85 16 35 H 0.13 1.52 7.31 -2.39 -0.02 1.50 16 36 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.10 1.53 7.48 -2.39 -0.02 1.52 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.37 19.67 7.51 -92.71 -0.70 18.97 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.05 1.87 6.89 -2.38 -0.02 1.86 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -74.14 382.52 2.43 -71.71 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.31 Total: 25.62 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.99 Total: 17.46 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.47 Total: -124.18 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.13 Total: -36.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.30 Total: -1.31 kcal Total: -74.14 2.43 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986367264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.372 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds