Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99881 * 2 1 4 4 C 1.50693 * 109.47118 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80437 * 89.97531 * 4 3 2 6 6 C 1.30940 * 117.36463 * 180.02562 * 5 4 3 7 7 C 1.50703 * 122.90803 * 179.97438 * 6 5 4 8 8 C 1.35666 * 114.19255 * 0.26634 * 6 5 4 9 9 C 1.46675 * 126.13160 * 179.72813 * 8 6 5 10 10 O 1.21683 * 120.00392 * 353.36854 * 9 8 6 11 11 N 1.34783 * 120.00236 * 173.37355 * 9 8 6 12 12 C 1.47429 * 125.64419 * 3.27526 * 11 9 8 13 13 C 1.54691 * 104.94141 * 204.07471 * 12 11 9 14 14 C 1.55162 * 101.67559 * 323.28077 * 13 12 11 15 15 H 1.08994 * 110.71808 * 276.97137 * 14 13 12 16 16 N 1.46500 * 110.87089 * 153.76732 * 14 13 12 17 17 C 1.36944 * 119.99685 * 91.38619 * 16 14 13 18 18 H 1.08000 * 120.00086 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99664 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99598 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46955 * 60.00490 * 21 19 17 23 23 H 1.48506 * 109.46671 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47432 * 300.00042 * 21 19 17 25 25 C 1.47019 * 125.65000 * 183.58692 * 11 9 8 26 26 H 1.08992 * 109.88321 * 59.48338 * 25 11 9 27 27 C 1.52998 * 109.88264 * 298.47157 * 25 11 9 28 28 S 1.70955 * 124.80487 * 269.99786 * 4 3 2 29 29 H 1.09003 * 109.47436 * 299.99693 * 1 2 3 30 30 H 1.08995 * 109.47840 * 59.99937 * 1 2 3 31 31 H 1.09002 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47420 * 59.99861 * 3 2 1 33 33 H 1.09005 * 109.46512 * 300.00134 * 3 2 1 34 34 H 1.08996 * 109.46854 * 90.02287 * 7 6 5 35 35 H 1.09003 * 109.46848 * 330.02569 * 7 6 5 36 36 H 1.09000 * 109.47336 * 210.02411 * 7 6 5 37 37 H 1.09000 * 110.36580 * 323.00583 * 12 11 9 38 38 H 1.08997 * 110.36465 * 85.32955 * 12 11 9 39 39 H 1.08993 * 111.10411 * 205.10644 * 13 12 11 40 40 H 1.09000 * 110.81347 * 81.31951 * 13 12 11 41 41 H 0.96993 * 120.00512 * 271.38552 * 16 14 13 42 42 H 0.97005 * 119.99638 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47184 * 61.45450 * 27 25 11 44 44 H 1.09005 * 109.47073 * 181.45492 * 27 25 11 45 45 H 1.09001 * 109.46812 * 301.45535 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2484 1.1280 -1.0637 6 6 5.5428 1.0250 -0.8947 7 6 6.5148 0.9471 -2.0437 8 6 5.9327 0.9882 0.4042 9 6 7.3116 0.8715 0.8903 10 8 8.2195 0.6761 0.1040 11 7 7.5732 0.9806 2.2079 12 6 6.5673 1.1483 3.2726 13 6 7.3284 1.8239 4.4376 14 6 8.7189 1.1422 4.3414 15 1 8.7113 0.1774 4.8485 16 7 9.7639 2.0077 4.8937 17 6 10.1083 1.9075 6.2153 18 1 9.6099 1.1900 6.8503 19 6 11.0988 2.7272 6.7384 20 7 11.7066 3.6013 5.9644 21 14 11.5691 2.5899 8.5411 22 1 12.0554 1.2154 8.8224 23 1 12.6434 3.5682 8.8482 24 1 10.3821 2.8776 9.3857 25 6 8.9093 0.9584 2.8210 26 1 9.5138 1.7728 2.4219 27 6 9.5900 -0.3821 2.5369 28 16 4.4857 1.1093 1.4027 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6884 1.8463 -0.8900 34 1 6.8310 1.9526 -2.3209 35 1 6.0318 0.4700 -2.8965 36 1 7.3847 0.3621 -1.7447 37 1 5.7541 1.7876 2.9288 38 1 6.1817 0.1783 3.5864 39 1 6.8529 1.6083 5.3944 40 1 7.4084 2.8989 4.2763 41 1 10.2118 2.6518 4.3233 42 1 12.3985 4.1744 6.3302 43 1 9.7095 -0.5081 1.4608 44 1 10.5690 -0.4012 3.0158 45 1 8.9764 -1.1919 2.9316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987430149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -12.392979 kcal Electronic energy + Delta-G solvation = -27185.775464 eV Core-core repulsion = 23331.081149 eV Total energy + Delta-G solvation = -3854.694315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54728 -39.72583 -38.23289 -37.37287 -34.23955 -32.70558 -31.75929 -31.00537 -29.55925 -29.07956 -27.89240 -26.45190 -25.35267 -23.40673 -23.13131 -22.81475 -21.13923 -19.93786 -18.48651 -18.35554 -17.30759 -17.04160 -16.73190 -16.34299 -15.98572 -15.77638 -15.17959 -14.83010 -14.47367 -14.18606 -13.93530 -13.66538 -13.54472 -13.20639 -13.07641 -12.86628 -12.71577 -12.57737 -12.49907 -12.17456 -12.03631 -11.84345 -11.74393 -11.44156 -11.21290 -11.09879 -10.88805 -10.67314 -10.35794 -10.29337 -10.14057 -9.90069 -9.84206 -9.64362 -9.55497 -9.05977 -8.95862 -8.47783 -7.09944 -5.86345 -3.17440 0.01700 0.98508 1.40833 2.22243 2.95119 3.11748 3.31716 3.38519 3.43460 3.44454 3.92729 4.46156 4.47509 4.50976 4.79156 4.84236 4.86262 4.90739 4.93020 4.98409 5.15032 5.23274 5.23864 5.38510 5.45039 5.59439 5.60848 5.66871 5.70923 5.78531 5.86500 6.00573 6.05046 6.19967 6.26530 6.37797 6.48965 6.55260 6.56794 6.64288 6.82602 7.42350 7.58218 7.60732 8.14162 8.30584 9.42229 9.95378 10.30185 11.35505 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.002615 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.081034 B =10703.878966 C =11731.922429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.024 3.976 5 N -0.462 5.462 6 C 0.143 3.857 7 C -0.091 4.091 8 C -0.286 4.286 9 C 0.608 3.392 10 O -0.523 6.523 11 N -0.603 5.603 12 C 0.089 3.911 13 C -0.152 4.152 14 C 0.178 3.822 15 H 0.070 0.930 16 N -0.712 5.712 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.128 3.872 26 H 0.081 0.919 27 C -0.155 4.155 28 S 0.212 5.788 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.258 0.742 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.301 -5.448 -11.375 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.251 4.251 5 N -0.178 5.178 6 C 0.004 3.996 7 C -0.150 4.150 8 C -0.411 4.411 9 C 0.395 3.605 10 O -0.402 6.402 11 N -0.336 5.336 12 C -0.036 4.036 13 C -0.193 4.193 14 C 0.065 3.935 15 H 0.088 0.912 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.025 3.975 26 H 0.099 0.901 27 C -0.213 4.213 28 S 0.471 5.529 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.196 -5.708 -11.067 24.583 hybrid contribution 0.491 0.492 0.147 0.710 sum -20.705 -5.216 -10.920 23.982 Atomic orbital electron populations 1.22815 0.79924 1.03378 1.00381 1.87968 1.20356 1.26220 1.95528 1.20799 0.84606 0.86097 1.02539 1.27175 1.00699 1.03252 0.93947 1.66061 1.04486 1.15380 1.31871 1.20621 0.89851 0.95400 0.93693 1.20696 0.96981 1.03866 0.93429 1.25613 0.98232 1.19885 0.97319 1.16255 0.85708 0.77425 0.81092 1.90757 1.45121 1.50111 1.54183 1.48414 1.09546 1.70958 1.04690 1.22579 0.91285 1.00680 0.89006 1.23555 0.98725 1.01182 0.95858 1.21240 0.88320 0.94736 0.89156 0.91193 1.42335 1.41369 1.42400 1.09108 1.19160 1.15942 1.16799 0.85869 0.90972 1.24777 0.98940 0.98664 0.98142 1.69656 1.28081 1.24991 1.34890 0.86248 0.77845 0.77244 0.84689 1.21136 1.21664 1.21174 1.22037 0.81825 0.98866 0.94769 0.90106 1.22058 1.00978 0.95784 1.02481 1.84260 0.95528 1.64227 1.08870 0.93594 0.93587 0.89074 0.90672 0.90084 0.90215 0.90826 0.87767 0.91371 0.90783 0.90053 0.90408 0.77912 0.93255 0.91698 0.90919 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.67 10.69 -35.23 -0.38 -4.04 16 3 C 0.14 1.18 6.51 36.00 0.23 1.42 16 4 C 0.02 0.27 7.01 -13.29 -0.09 0.18 16 5 N -0.46 -6.27 10.50 -7.70 -0.08 -6.35 16 6 C 0.14 2.01 6.79 -83.89 -0.57 1.44 16 7 C -0.09 -1.14 9.79 36.01 0.35 -0.78 16 8 C -0.29 -4.08 6.38 -37.10 -0.24 -4.32 16 9 C 0.61 9.88 7.61 -12.85 -0.10 9.78 16 10 O -0.52 -9.53 13.16 5.20 0.07 -9.46 16 11 N -0.60 -9.42 3.07 -164.68 -0.51 -9.93 16 12 C 0.09 1.18 5.63 -2.64 -0.01 1.16 16 13 C -0.15 -2.37 6.76 -24.70 -0.17 -2.53 16 14 C 0.18 3.27 3.14 -66.09 -0.21 3.06 16 15 H 0.07 1.28 7.80 -51.93 -0.41 0.88 16 16 N -0.71 -16.73 5.23 -51.65 -0.27 -17.00 16 17 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 21 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.13 2.22 3.23 -66.95 -0.22 2.00 16 26 H 0.08 1.56 7.72 -51.93 -0.40 1.16 16 27 C -0.15 -2.54 9.11 37.16 0.34 -2.20 16 28 S 0.21 2.36 18.75 -107.50 -2.02 0.35 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.44 5.86 -51.93 -0.30 1.13 16 37 H 0.07 0.81 4.98 -29.40 -0.15 0.66 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.39 9.84 7.56 -40.82 -0.31 9.53 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 43 H 0.06 1.10 6.76 -51.93 -0.35 0.75 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -31.61 378.28 -8.12 -39.73 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.54 Total: 7.31 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 0.19 Total: 3.58 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.13 Total: -59.66 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.31 Total: -13.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.02 Total: 0.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.61 -8.12 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987430149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.340 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds