Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99881 * 2 1 4 4 C 1.50693 * 109.47118 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80437 * 89.97531 * 4 3 2 6 6 C 1.30940 * 117.36463 * 180.02562 * 5 4 3 7 7 C 1.50703 * 122.90803 * 179.97438 * 6 5 4 8 8 C 1.35666 * 114.19255 * 0.26634 * 6 5 4 9 9 C 1.46675 * 126.13160 * 179.72813 * 8 6 5 10 10 O 1.21683 * 120.00392 * 353.36854 * 9 8 6 11 11 N 1.34783 * 120.00236 * 173.37355 * 9 8 6 12 12 C 1.47429 * 125.64419 * 3.27526 * 11 9 8 13 13 C 1.54691 * 104.94141 * 204.07471 * 12 11 9 14 14 C 1.55162 * 101.67559 * 323.28077 * 13 12 11 15 15 H 1.08994 * 110.71808 * 276.97137 * 14 13 12 16 16 N 1.46500 * 110.87089 * 153.76732 * 14 13 12 17 17 C 1.36944 * 119.99685 * 91.38619 * 16 14 13 18 18 H 1.08000 * 120.00086 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99664 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99598 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46955 * 60.00490 * 21 19 17 23 23 H 1.48506 * 109.46671 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47432 * 300.00042 * 21 19 17 25 25 C 1.47019 * 125.65000 * 183.58692 * 11 9 8 26 26 H 1.08992 * 109.88321 * 59.48338 * 25 11 9 27 27 C 1.52998 * 109.88264 * 298.47157 * 25 11 9 28 28 S 1.70955 * 124.80487 * 269.99786 * 4 3 2 29 29 H 1.09003 * 109.47436 * 299.99693 * 1 2 3 30 30 H 1.08995 * 109.47840 * 59.99937 * 1 2 3 31 31 H 1.09002 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47420 * 59.99861 * 3 2 1 33 33 H 1.09005 * 109.46512 * 300.00134 * 3 2 1 34 34 H 1.08996 * 109.46854 * 90.02287 * 7 6 5 35 35 H 1.09003 * 109.46848 * 330.02569 * 7 6 5 36 36 H 1.09000 * 109.47336 * 210.02411 * 7 6 5 37 37 H 1.09000 * 110.36580 * 323.00583 * 12 11 9 38 38 H 1.08997 * 110.36465 * 85.32955 * 12 11 9 39 39 H 1.08993 * 111.10411 * 205.10644 * 13 12 11 40 40 H 1.09000 * 110.81347 * 81.31951 * 13 12 11 41 41 H 0.96993 * 120.00512 * 271.38552 * 16 14 13 42 42 H 0.97005 * 119.99638 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47184 * 61.45450 * 27 25 11 44 44 H 1.09005 * 109.47073 * 181.45492 * 27 25 11 45 45 H 1.09001 * 109.46812 * 301.45535 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2484 1.1280 -1.0637 6 6 5.5428 1.0250 -0.8947 7 6 6.5148 0.9471 -2.0437 8 6 5.9327 0.9882 0.4042 9 6 7.3116 0.8715 0.8903 10 8 8.2195 0.6761 0.1040 11 7 7.5732 0.9806 2.2079 12 6 6.5673 1.1483 3.2726 13 6 7.3284 1.8239 4.4376 14 6 8.7189 1.1422 4.3414 15 1 8.7113 0.1774 4.8485 16 7 9.7639 2.0077 4.8937 17 6 10.1083 1.9075 6.2153 18 1 9.6099 1.1900 6.8503 19 6 11.0988 2.7272 6.7384 20 7 11.7066 3.6013 5.9644 21 14 11.5691 2.5899 8.5411 22 1 12.0554 1.2154 8.8224 23 1 12.6434 3.5682 8.8482 24 1 10.3821 2.8776 9.3857 25 6 8.9093 0.9584 2.8210 26 1 9.5138 1.7728 2.4219 27 6 9.5900 -0.3821 2.5369 28 16 4.4857 1.1093 1.4027 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6884 1.8463 -0.8900 34 1 6.8310 1.9526 -2.3209 35 1 6.0318 0.4700 -2.8965 36 1 7.3847 0.3621 -1.7447 37 1 5.7541 1.7876 2.9288 38 1 6.1817 0.1783 3.5864 39 1 6.8529 1.6083 5.3944 40 1 7.4084 2.8989 4.2763 41 1 10.2118 2.6518 4.3233 42 1 12.3985 4.1744 6.3302 43 1 9.7095 -0.5081 1.4608 44 1 10.5690 -0.4012 3.0158 45 1 8.9764 -1.1919 2.9316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987430149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -34.241586 kcal Electronic energy + Delta-G solvation = -27186.722890 eV Core-core repulsion = 23331.081149 eV Total energy + Delta-G solvation = -3855.641741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67704 -40.85558 -38.97614 -38.59726 -35.97621 -33.80392 -33.29614 -32.33028 -31.13720 -29.80928 -29.04030 -26.99546 -26.90430 -25.04126 -24.33693 -23.76561 -22.41023 -21.32770 -19.67591 -19.37875 -19.07796 -17.86258 -17.70468 -17.48413 -16.88193 -16.58197 -16.52209 -16.15407 -15.71597 -15.48471 -15.25802 -15.02462 -14.90556 -14.56268 -14.14795 -14.01320 -13.64895 -13.52742 -13.51719 -13.35807 -13.26110 -13.06817 -12.90872 -12.70127 -12.58116 -12.39372 -12.34928 -12.21900 -12.14571 -11.73495 -11.64219 -11.16787 -10.90091 -10.79754 -10.64854 -10.58633 -10.08033 -9.64952 -9.03098 -7.92682 -5.22955 -0.96356 0.04675 0.44755 1.20454 1.51166 1.53685 1.59389 1.71488 1.96478 2.58207 2.59939 3.19713 3.29874 3.42068 3.60855 3.75165 3.77358 3.89406 3.99304 4.13492 4.17189 4.25726 4.32068 4.34142 4.45098 4.53934 4.55607 4.59869 4.61548 4.64022 4.70308 4.83094 4.83682 4.90480 5.01318 5.17654 5.19661 5.25441 5.28588 5.40242 5.55919 6.04646 6.26509 6.30657 6.51389 6.89572 7.34103 8.04960 8.28875 9.30391 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.002615 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.081034 B =10703.878966 C =11731.922429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.135 3.865 4 C 0.026 3.974 5 N -0.484 5.484 6 C 0.139 3.861 7 C -0.089 4.089 8 C -0.321 4.321 9 C 0.605 3.395 10 O -0.553 6.553 11 N -0.605 5.605 12 C 0.094 3.906 13 C -0.142 4.142 14 C 0.173 3.827 15 H 0.078 0.922 16 N -0.726 5.726 17 C -0.237 4.237 18 H 0.085 0.915 19 C -0.075 4.075 20 N -0.971 5.971 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.302 1.302 24 H -0.275 1.275 25 C 0.135 3.865 26 H 0.052 0.948 27 C -0.145 4.145 28 S 0.266 5.734 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.584 -6.365 -10.441 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.056 3.944 4 C -0.248 4.248 5 N -0.201 5.201 6 C -0.001 4.001 7 C -0.147 4.147 8 C -0.445 4.445 9 C 0.394 3.606 10 O -0.434 6.434 11 N -0.337 5.337 12 C -0.030 4.030 13 C -0.183 4.183 14 C 0.063 3.937 15 H 0.096 0.904 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.103 0.897 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.229 1.229 24 H -0.201 1.201 25 C 0.031 3.969 26 H 0.070 0.930 27 C -0.203 4.203 28 S 0.526 5.474 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.560 -6.666 -10.118 27.386 hybrid contribution 1.346 0.729 -0.230 1.548 sum -23.213 -5.938 -10.348 26.100 Atomic orbital electron populations 1.23023 0.77943 1.04323 1.01730 1.87915 1.22525 1.26718 1.95820 1.21043 0.82484 0.86295 1.04571 1.27844 1.02276 1.00950 0.93697 1.66140 1.04239 1.16909 1.32850 1.20828 0.90434 0.94810 0.94005 1.20655 0.96401 1.03962 0.93710 1.25459 0.98431 1.22181 0.98403 1.16535 0.86438 0.76764 0.80836 1.90737 1.46389 1.51367 1.54866 1.48403 1.09218 1.71003 1.05123 1.22700 0.90810 1.02222 0.87239 1.23358 0.96994 1.00039 0.97881 1.21420 0.88448 0.94418 0.89419 0.90418 1.42492 1.42674 1.42958 1.08395 1.19588 1.14716 1.15603 0.86932 0.89704 1.25570 0.99857 0.99231 1.02041 1.69826 1.29173 1.26539 1.36545 0.85225 0.77332 0.76972 0.80288 1.20400 1.22858 1.20055 1.21756 0.82725 0.98309 0.94132 0.92970 1.21954 1.00688 0.95848 1.01851 1.83843 0.93058 1.63057 1.07459 0.91833 0.92631 0.88439 0.87608 0.89095 0.89768 0.89521 0.89356 0.89595 0.88048 0.88211 0.92079 0.79606 0.94137 0.92555 0.91927 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.73 10.69 -148.98 -1.59 -8.32 16 3 C 0.14 1.87 6.51 71.23 0.46 2.33 16 4 C 0.03 0.54 7.01 88.46 0.62 1.16 16 5 N -0.48 -12.44 10.50 -178.28 -1.87 -14.31 16 6 C 0.14 3.80 6.79 42.10 0.29 4.09 16 7 C -0.09 -2.23 9.79 71.24 0.70 -1.53 16 8 C -0.32 -8.81 6.38 23.88 0.15 -8.65 16 9 C 0.61 19.56 7.61 86.45 0.66 20.22 16 10 O -0.55 -20.71 13.16 -4.29 -0.06 -20.76 16 11 N -0.60 -18.40 3.07 -793.16 -2.43 -20.83 16 12 C 0.09 2.24 5.63 86.78 0.49 2.73 16 13 C -0.14 -4.15 6.76 31.91 0.22 -3.94 16 14 C 0.17 6.23 3.14 46.18 0.15 6.38 16 15 H 0.08 2.70 7.80 -2.39 -0.02 2.68 16 16 N -0.73 -34.43 5.23 -317.32 -1.66 -36.09 16 17 C -0.24 -12.26 9.96 84.03 0.84 -11.43 16 18 H 0.09 4.10 7.83 -2.91 -0.02 4.07 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.97 -58.13 13.06 21.65 0.28 -57.85 16 21 Si 0.97 44.37 29.55 68.60 2.03 46.39 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.13 4.70 3.23 45.34 0.15 4.84 16 26 H 0.05 2.12 7.72 -2.39 -0.02 2.10 16 27 C -0.15 -4.78 9.11 71.98 0.66 -4.12 16 28 S 0.27 5.16 18.75 -56.49 -1.06 4.11 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.52 5.86 -2.39 -0.01 2.51 16 37 H 0.09 1.77 4.98 -16.71 -0.08 1.68 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.37 19.62 7.56 -92.71 -0.70 18.92 16 42 H 0.25 14.68 8.31 -92.70 -0.77 13.90 16 43 H 0.06 1.94 6.76 -2.39 -0.02 1.93 16 44 H 0.06 2.15 8.14 -2.38 -0.02 2.14 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -69.66 378.28 0.96 -68.70 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.24 Total: 29.08 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 7.08 Total: 9.88 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.68 Total: -129.08 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.65 Total: -29.09 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.06 Total: 4.11 kcal Total: -69.66 0.96 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987430149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.460 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds