Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32560 * 121.65100 * 2 1 4 4 S 1.77226 * 105.32467 * 180.19352 * 3 2 1 5 5 C 1.72214 * 94.84439 * 359.76129 * 4 3 2 6 6 O 1.21826 * 127.05774 * 180.02562 * 5 4 3 7 7 N 1.34240 * 105.88669 * 0.02562 * 5 4 3 8 8 C 1.46495 * 121.38256 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47119 * 90.02479 * 8 7 5 10 10 C 1.50700 * 109.46891 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00484 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99804 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64758 * 359.97438 * 12 10 9 14 14 C 1.54327 * 107.27336 * 178.97550 * 13 12 10 15 15 H 1.08993 * 110.72079 * 96.16743 * 14 13 12 16 16 N 1.46496 * 110.72108 * 219.44674 * 14 13 12 17 17 C 1.36943 * 119.99804 * 273.54304 * 16 14 13 18 18 H 1.07998 * 119.99804 * 359.97438 * 17 16 14 19 19 C 1.38807 * 119.99940 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47219 * 59.99520 * 21 19 17 23 23 H 1.48501 * 109.47157 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46975 * 299.99354 * 21 19 17 25 25 C 1.55165 * 102.94078 * 337.80587 * 14 13 12 26 26 C 1.47425 * 125.64906 * 180.02562 * 12 10 9 27 27 H 1.08997 * 110.36655 * 85.26071 * 26 12 10 28 28 C 1.53003 * 110.36526 * 323.04117 * 26 12 10 29 29 H 1.08996 * 109.47819 * 270.24931 * 1 2 3 30 30 H 1.09002 * 109.46907 * 30.24375 * 1 2 3 31 31 H 1.09004 * 109.47337 * 150.24114 * 1 2 3 32 32 H 1.08010 * 127.34017 * 359.93623 * 3 2 1 33 33 H 1.09002 * 109.47094 * 330.02239 * 8 7 5 34 34 H 1.08999 * 109.47298 * 210.02300 * 8 7 5 35 35 H 1.09002 * 109.47333 * 59.99907 * 9 8 7 36 36 H 1.08999 * 109.46889 * 300.00072 * 9 8 7 37 37 H 1.08997 * 109.88723 * 59.55959 * 13 12 10 38 38 H 1.08998 * 109.88661 * 298.38940 * 13 12 10 39 39 H 0.96996 * 120.00232 * 93.54399 * 16 14 13 40 40 H 0.97004 * 119.99895 * 180.02562 * 20 19 17 41 41 H 1.08995 * 111.00547 * 153.57467 * 25 14 13 42 42 H 1.09001 * 111.00003 * 277.43047 * 25 14 13 43 43 H 1.08997 * 109.47000 * 61.45857 * 28 26 12 44 44 H 1.09003 * 109.46650 * 181.45430 * 28 26 12 45 45 H 1.08994 * 109.47048 * 301.45295 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2025 1.1284 0.0000 4 16 3.9033 0.6302 -0.0058 5 6 3.5605 -1.0574 -0.0006 6 8 4.3671 -1.9704 -0.0014 7 7 2.2221 -1.1605 0.0044 8 6 1.5576 -2.4661 0.0093 9 6 1.3309 -2.9176 1.4535 10 6 0.6478 -4.2609 1.4585 11 8 0.3693 -4.8035 0.4102 12 7 0.3465 -4.8593 2.6279 13 6 0.6265 -4.3166 3.9653 14 6 0.0836 -5.3307 4.9942 15 1 0.8775 -5.9937 5.3379 16 7 -0.5413 -4.6386 6.1241 17 6 0.2224 -4.2339 7.1863 18 1 1.2853 -4.4254 7.1912 19 6 -0.3697 -3.5786 8.2571 20 7 -1.6651 -3.3457 8.2513 21 14 0.6721 -3.0260 9.7058 22 1 1.7117 -2.0761 9.2342 23 1 -0.1922 -2.3549 10.7097 24 1 1.3253 -4.2073 10.3249 25 6 -0.9758 -6.1190 4.1795 26 6 -0.3175 -6.1670 2.7779 27 1 0.4155 -6.9723 2.7304 28 6 -1.3811 -6.3516 1.6936 29 1 -0.3634 0.0045 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3634 -0.8922 -0.5101 32 1 1.8153 2.1367 -0.0010 33 1 2.1842 -3.1946 -0.5051 34 1 0.5979 -2.3872 -0.5015 35 1 0.7043 -2.1890 1.9679 36 1 2.2905 -2.9964 1.9644 37 1 0.1233 -3.3577 4.0891 38 1 1.7013 -4.1935 4.0979 39 1 -1.4959 -4.4669 6.1198 40 1 -2.0788 -2.8874 8.9995 41 1 -1.1108 -7.1228 4.5822 42 1 -1.9236 -5.5816 4.1479 43 1 -0.9073 -6.3283 0.7122 44 1 -1.8799 -7.3107 1.8335 45 1 -2.1136 -5.5475 1.7626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988968716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -41.195507 kcal Electronic energy + Delta-G solvation = -27474.403911 eV Core-core repulsion = 23618.460625 eV Total energy + Delta-G solvation = -3855.943286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.18508 -41.22242 -38.90607 -38.66400 -35.98722 -34.61374 -33.31722 -32.98023 -31.93256 -30.11005 -29.05124 -26.69386 -26.20884 -25.69730 -24.34087 -22.80341 -21.79843 -21.32126 -20.03388 -19.21371 -19.07978 -18.45712 -17.80660 -17.43849 -17.23426 -16.63761 -16.54873 -15.99670 -15.69814 -15.42635 -15.29908 -14.96103 -14.67521 -14.55140 -14.41803 -14.33648 -14.14422 -13.78834 -13.48175 -13.28571 -13.18702 -13.06064 -12.90130 -12.79232 -12.46288 -12.40059 -12.30153 -12.17020 -12.11610 -12.08947 -11.72752 -11.56160 -11.24234 -11.02784 -10.78110 -10.54454 -9.67602 -9.07848 -8.99027 -7.95290 -5.25258 -0.14783 0.35102 0.83360 1.08085 1.49908 1.50839 1.51303 1.57433 1.61269 2.01712 2.56341 3.29289 3.36102 3.56175 3.60470 3.67780 3.80896 3.87107 3.91482 4.13635 4.18834 4.24077 4.28481 4.38792 4.48300 4.51438 4.54341 4.62230 4.74363 4.74574 4.76958 4.77900 4.86519 4.98821 5.11135 5.14203 5.23352 5.27288 5.31992 5.51955 5.54080 5.71126 6.19454 6.25710 6.47978 7.04706 7.33964 8.04800 8.29069 9.27147 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.003207 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.247899 B = 8727.484860 C =10594.434956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.090 3.910 3 C -0.222 4.222 4 S -0.001 6.001 5 C 0.459 3.541 6 O -0.521 6.521 7 N -0.530 5.530 8 C 0.124 3.876 9 C -0.145 4.145 10 C 0.535 3.465 11 O -0.566 6.566 12 N -0.608 5.608 13 C 0.087 3.913 14 C 0.164 3.836 15 H 0.066 0.934 16 N -0.723 5.723 17 C -0.246 4.246 18 H 0.078 0.922 19 C -0.064 4.064 20 N -0.965 5.965 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.279 1.279 25 C -0.123 4.123 26 C 0.135 3.865 27 H 0.082 0.918 28 C -0.153 4.153 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 6.737 -18.721 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.019 4.019 3 C -0.359 4.359 4 S 0.242 5.758 5 C 0.143 3.857 6 O -0.405 6.405 7 N -0.250 5.250 8 C -0.001 4.001 9 C -0.185 4.185 10 C 0.324 3.676 11 O -0.447 6.447 12 N -0.341 5.341 13 C -0.039 4.039 14 C 0.054 3.946 15 H 0.084 0.916 16 N -0.362 5.362 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.614 5.614 21 Si 0.795 3.205 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.206 1.206 25 C -0.162 4.162 26 C 0.032 3.968 27 H 0.100 0.900 28 C -0.210 4.210 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.210 0.790 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.684 6.612 -19.202 20.640 hybrid contribution -0.735 -0.399 1.238 1.494 sum 2.949 6.213 -17.963 19.235 Atomic orbital electron populations 1.20963 0.84163 1.05951 1.05000 1.20007 0.97315 0.84022 1.00590 1.25439 0.90773 1.02718 1.16973 1.85152 1.11182 0.99198 1.80249 1.22031 0.84276 0.96412 0.82960 1.90939 1.49987 1.44182 1.55418 1.46187 1.05929 1.08686 1.64240 1.21529 1.00198 0.82128 0.96231 1.21867 1.02496 0.95199 0.98960 1.20128 0.78456 0.86826 0.82158 1.90622 1.55923 1.66746 1.31381 1.48645 1.58504 1.21203 1.05737 1.22965 1.00252 0.99242 0.81474 1.21341 0.95132 0.91691 0.86439 0.91601 1.42467 1.07692 1.68397 1.17674 1.19567 0.92286 1.29485 0.96463 0.90453 1.25451 0.96780 1.02250 1.01264 1.69785 1.10421 1.48275 1.32958 0.85336 0.77656 0.78080 0.79409 1.20518 1.22340 1.20561 1.23048 0.98219 1.01787 0.93135 1.21983 0.94578 0.84800 0.95418 0.90008 1.22060 0.97677 1.02218 0.99089 0.88976 0.86353 0.90253 0.75478 0.89916 0.85966 0.86855 0.89394 0.91929 0.92001 0.79009 0.93942 0.88617 0.91069 0.91025 0.90199 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.69 71.23 0.69 -0.16 16 2 C 0.09 1.31 6.59 40.71 0.27 1.58 16 3 C -0.22 -2.81 11.24 66.67 0.75 -2.06 16 4 S 0.00 -0.02 22.97 -56.49 -1.30 -1.32 16 5 C 0.46 12.26 8.27 129.87 1.07 13.33 16 6 O -0.52 -17.99 17.55 -4.75 -0.08 -18.08 16 7 N -0.53 -11.16 2.60 -643.44 -1.68 -12.84 16 8 C 0.12 2.68 4.56 86.38 0.39 3.07 16 9 C -0.14 -3.38 5.22 29.85 0.16 -3.22 16 10 C 0.54 14.96 7.63 87.66 0.67 15.63 16 11 O -0.57 -17.70 13.63 -3.02 -0.04 -17.74 16 12 N -0.61 -17.34 3.24 -788.12 -2.56 -19.90 16 13 C 0.09 2.74 6.24 86.73 0.54 3.28 16 14 C 0.16 5.73 3.59 46.18 0.17 5.89 16 15 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 16 N -0.72 -32.85 5.18 -317.33 -1.64 -34.49 16 17 C -0.25 -12.60 9.98 84.03 0.84 -11.76 16 18 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 20 N -0.96 -55.54 13.06 21.65 0.28 -55.26 16 21 Si 0.97 43.71 29.55 68.60 2.03 45.74 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 C -0.12 -3.51 6.12 31.99 0.20 -3.31 16 26 C 0.13 3.57 3.76 45.47 0.17 3.74 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 C -0.15 -3.75 8.71 71.98 0.63 -3.12 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 0.37 8.10 -2.39 -0.02 0.35 16 31 H 0.08 0.69 6.18 -2.38 -0.01 0.68 16 32 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.08 2.14 7.76 -2.39 -0.02 2.13 16 34 H 0.12 2.14 6.07 -2.39 -0.01 2.12 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 2.14 8.03 -2.39 -0.02 2.12 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.38 18.54 7.71 -92.71 -0.72 17.82 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.07 2.14 7.92 -2.39 -0.02 2.12 16 43 H 0.07 1.98 5.89 -2.39 -0.01 1.96 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.97 381.34 2.32 -65.65 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.29 Total: 28.32 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.01 Total: 19.89 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.59 Total: -122.48 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.12 Total: -35.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.30 Total: -1.32 kcal Total: -67.97 2.32 -65.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988968716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.454 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds