Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99788 * 2 1 4 4 C 1.50704 * 109.46808 * 180.02562 * 3 2 1 5 5 N 1.29429 * 124.80524 * 89.95933 * 4 3 2 6 6 C 1.30949 * 117.36004 * 179.76209 * 5 4 3 7 7 C 1.50701 * 122.89842 * 180.30531 * 6 5 4 8 8 C 1.35660 * 114.19219 * 0.48789 * 6 5 4 9 9 C 1.46683 * 126.12627 * 179.82329 * 8 6 5 10 10 O 1.21683 * 120.00585 * 353.48712 * 9 8 6 11 11 N 1.34774 * 119.99558 * 173.49188 * 9 8 6 12 12 C 1.47424 * 125.65349 * 354.46806 * 11 9 8 13 13 C 1.54913 * 104.83548 * 204.08455 * 12 11 9 14 14 H 1.08997 * 111.03469 * 204.89734 * 13 12 11 15 15 N 1.46499 * 111.00639 * 81.06101 * 13 12 11 16 16 C 1.36939 * 120.00051 * 92.80077 * 15 13 12 17 17 H 1.08003 * 119.99460 * 0.02562 * 16 15 13 18 18 C 1.38802 * 120.00046 * 179.97438 * 16 15 13 19 19 N 1.31628 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00157 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47482 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46873 * 60.00117 * 20 18 16 23 23 H 1.48502 * 109.47138 * 300.00675 * 20 18 16 24 24 C 1.55153 * 101.57881 * 322.98840 * 13 12 11 25 25 C 1.47028 * 125.64745 * 174.41531 * 11 9 8 26 26 H 1.08997 * 110.01139 * 59.49568 * 25 11 9 27 27 C 1.52998 * 109.87931 * 298.40300 * 25 11 9 28 28 S 1.70953 * 124.80128 * 269.99742 * 4 3 2 29 29 H 1.08997 * 109.47619 * 59.99756 * 1 2 3 30 30 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47342 * 299.99567 * 1 2 3 32 32 H 1.09001 * 109.47156 * 60.00320 * 3 2 1 33 33 H 1.09004 * 109.47367 * 300.00093 * 3 2 1 34 34 H 1.09004 * 109.47070 * 270.18972 * 7 6 5 35 35 H 1.08999 * 109.47678 * 30.19939 * 7 6 5 36 36 H 1.09006 * 109.46501 * 150.19636 * 7 6 5 37 37 H 1.08998 * 110.36845 * 85.24315 * 12 11 9 38 38 H 1.09004 * 110.36614 * 322.92189 * 12 11 9 39 39 H 0.96998 * 119.99613 * 272.80859 * 15 13 12 40 40 H 0.97000 * 119.99605 * 359.97438 * 19 18 16 41 41 H 1.08999 * 110.72173 * 153.86515 * 24 13 12 42 42 H 1.09004 * 110.72096 * 277.13910 * 24 13 12 43 43 H 1.09006 * 109.47259 * 302.18855 * 27 25 11 44 44 H 1.08996 * 109.47559 * 62.18955 * 27 25 11 45 45 H 1.08998 * 109.46959 * 182.19192 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2484 1.1275 -1.0637 6 6 5.5433 1.0299 -0.8946 7 6 6.5158 0.9596 -2.0436 8 6 5.9331 0.9936 0.4043 9 6 7.3127 0.8842 0.8904 10 8 8.2221 0.6974 0.1038 11 7 7.5731 0.9906 2.2085 12 6 6.5905 1.3295 3.2539 13 6 7.4318 1.9213 4.4122 14 1 6.9191 1.8054 5.3671 15 7 7.7558 3.3277 4.1607 16 6 6.9419 4.3155 4.6478 17 1 6.0615 4.0576 5.2177 18 6 7.2492 5.6480 4.4099 19 7 8.3225 5.9623 3.7158 20 14 6.1394 6.9955 5.0749 21 1 6.6830 8.3215 4.6859 22 1 6.0780 6.9003 6.5557 23 1 4.7747 6.8358 4.5117 24 6 8.7061 1.0381 4.3543 25 6 8.8841 0.7867 2.8421 26 1 9.6097 1.4893 2.4324 27 6 9.3588 -0.6484 2.6055 28 16 4.4857 1.1092 1.4027 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 6.6708 -0.0820 -2.3252 35 1 6.1139 1.5101 -2.8941 36 1 7.4665 1.3997 -1.7423 37 1 6.0653 0.4338 3.5857 38 1 5.8820 2.0701 2.8828 39 1 8.5467 3.5592 3.6491 40 1 8.8989 5.2626 3.3708 41 1 9.5649 1.5731 4.7599 42 1 8.5492 0.0993 4.8855 43 1 8.6202 -1.3454 3.0015 44 1 9.4822 -0.8186 1.5360 45 1 10.3122 -0.8036 3.1105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989737331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -15.302123 kcal Electronic energy + Delta-G solvation = -27876.620740 eV Core-core repulsion = 24021.800276 eV Total energy + Delta-G solvation = -3854.820464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.38676 -39.61752 -38.09453 -37.33230 -34.37595 -32.60334 -31.76804 -31.39164 -28.92150 -28.43064 -27.91725 -26.31251 -25.69195 -23.65065 -23.03287 -22.69408 -20.85590 -19.90498 -18.33387 -18.13370 -17.54975 -16.88335 -16.61190 -16.22011 -15.88724 -15.66895 -15.12966 -14.81182 -14.54139 -13.97611 -13.91252 -13.73198 -13.58777 -13.17353 -13.06508 -12.84623 -12.60207 -12.50910 -12.39923 -12.28307 -12.03026 -11.80779 -11.70943 -11.33576 -11.18918 -11.04117 -10.80728 -10.61673 -10.38353 -10.15388 -10.05580 -9.84105 -9.52848 -9.39107 -9.28590 -9.12411 -8.81699 -8.32552 -7.19651 -6.21363 -3.24065 0.22835 1.21155 1.64370 2.40844 3.10735 3.28417 3.44544 3.47271 3.47934 3.65547 4.10961 4.55036 4.60950 4.65587 4.95330 4.95577 5.02104 5.02655 5.07288 5.11282 5.15206 5.21615 5.29909 5.34889 5.49458 5.55505 5.63027 5.73163 5.75293 5.81677 5.84037 5.92302 5.98603 5.99879 6.24602 6.26359 6.38038 6.40642 6.51385 6.61824 6.70019 7.60393 7.67491 7.73118 8.28040 8.63549 9.07023 9.94003 10.07495 11.25926 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.004386 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.874101 B = 6381.704474 C = 8155.998894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.022 3.978 5 N -0.463 5.463 6 C 0.139 3.861 7 C -0.083 4.083 8 C -0.285 4.285 9 C 0.611 3.389 10 O -0.532 6.532 11 N -0.595 5.595 12 C 0.055 3.945 13 C 0.180 3.820 14 H 0.080 0.920 15 N -0.721 5.721 16 C -0.343 4.343 17 H 0.068 0.932 18 C -0.038 4.038 19 N -0.936 5.936 20 Si 1.078 2.922 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.295 1.295 24 C -0.140 4.140 25 C 0.140 3.860 26 H 0.076 0.924 27 C -0.159 4.159 28 S 0.227 5.773 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.370 0.630 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 -13.676 -3.813 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.060 3.940 4 C -0.253 4.253 5 N -0.179 5.179 6 C 0.000 4.000 7 C -0.142 4.142 8 C -0.409 4.409 9 C 0.398 3.602 10 O -0.412 6.412 11 N -0.327 5.327 12 C -0.073 4.073 13 C 0.067 3.933 14 H 0.097 0.903 15 N -0.361 5.361 16 C -0.473 4.473 17 H 0.086 0.914 18 C -0.237 4.237 19 N -0.580 5.580 20 Si 0.909 3.091 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.222 1.222 24 C -0.179 4.179 25 C 0.038 3.962 26 H 0.094 0.906 27 C -0.217 4.217 28 S 0.486 5.514 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.203 0.797 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.851 -12.249 -3.456 16.725 hybrid contribution 0.535 -1.398 -0.982 1.791 sum -10.316 -13.647 -4.438 17.674 Atomic orbital electron populations 1.22801 0.80064 1.03215 1.00411 1.87951 1.20259 1.26414 1.95545 1.20804 0.84615 0.85912 1.02654 1.27062 1.00632 1.03740 0.93816 1.66030 1.04424 1.15609 1.31875 1.20565 0.89868 0.95963 0.93635 1.20577 0.96968 1.03206 0.93423 1.25561 0.98350 1.19670 0.97342 1.16222 0.85761 0.77130 0.81044 1.90748 1.45188 1.51029 1.54202 1.48243 1.11459 1.67804 1.05226 1.23663 0.93099 0.99197 0.91344 1.21209 0.92304 0.85169 0.94618 0.90267 1.42362 1.29824 0.99384 1.64560 1.20025 1.06667 0.88450 1.32168 0.91430 1.25791 1.00665 0.97294 0.99903 1.70888 1.14658 1.35103 1.37376 0.83276 0.74358 0.76175 0.75339 1.20972 1.22063 1.22194 1.23126 1.00580 1.00504 0.93704 1.21500 0.84694 0.96898 0.93144 0.90591 1.22130 1.00974 0.95732 1.02912 1.84315 0.95273 1.63106 1.08721 0.93621 0.89197 0.93590 0.90561 0.90046 0.90301 0.90935 0.88490 0.91926 0.89705 0.79684 0.93247 0.89613 0.90386 0.92708 0.91608 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.44 10.69 -35.23 -0.38 -4.81 16 3 C 0.14 1.56 6.51 36.01 0.23 1.80 16 4 C 0.02 0.32 7.02 -13.29 -0.09 0.22 16 5 N -0.46 -7.56 10.50 -7.70 -0.08 -7.64 16 6 C 0.14 2.33 6.79 -83.89 -0.57 1.76 16 7 C -0.08 -1.22 9.62 36.01 0.35 -0.88 16 8 C -0.28 -4.93 6.35 -37.10 -0.24 -5.17 16 9 C 0.61 11.33 7.53 -12.85 -0.10 11.24 16 10 O -0.53 -10.60 13.63 5.20 0.07 -10.52 16 11 N -0.60 -10.30 3.07 -164.54 -0.50 -10.81 16 12 C 0.05 0.91 5.00 -2.53 -0.01 0.90 16 13 C 0.18 3.22 3.72 -65.78 -0.24 2.97 16 14 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 15 N -0.72 -16.75 5.23 -51.35 -0.27 -17.02 16 16 C -0.34 -8.98 9.96 -15.06 -0.15 -9.13 16 17 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 18 C -0.04 -1.05 5.50 -17.43 -0.10 -1.15 16 19 N -0.94 -28.21 13.70 55.49 0.76 -27.45 16 20 Si 1.08 24.88 29.92 -169.99 -5.09 19.79 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.14 -2.06 6.07 -24.90 -0.15 -2.21 16 25 C 0.14 2.22 3.43 -66.95 -0.23 1.99 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 C -0.16 -2.14 9.10 37.16 0.34 -1.80 16 28 S 0.23 3.33 18.89 -107.50 -2.03 1.30 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.57 6.17 -51.93 -0.32 1.25 16 37 H 0.06 0.88 7.97 -51.93 -0.41 0.47 16 38 H 0.09 1.57 5.80 -40.81 -0.24 1.33 16 39 H 0.37 9.18 6.70 -40.82 -0.27 8.91 16 40 H 0.26 7.67 6.77 -40.82 -0.28 7.40 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.08 0.94 7.85 -51.93 -0.41 0.54 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.99 7.09 -51.93 -0.37 0.62 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -33.01 378.37 -8.24 -41.25 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.57 Total: 8.32 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 0.15 Total: 1.89 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.09 Total: -62.92 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.31 Total: -15.34 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.79 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.03 Total: 1.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.01 -8.24 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989737331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.947 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds