Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32565 * 121.64500 * 2 1 4 4 S 1.77229 * 105.32011 * 179.97438 * 3 2 1 5 5 C 1.72211 * 94.84755 * 359.80670 * 4 3 2 6 6 O 1.21819 * 127.06134 * 180.19928 * 5 4 3 7 7 N 1.34254 * 105.88129 * 0.32515 * 5 4 3 8 8 C 1.46504 * 121.37617 * 179.88152 * 7 5 4 9 9 C 1.50703 * 109.46780 * 269.71491 * 8 7 5 10 10 O 1.21274 * 119.99916 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99778 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00210 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.52040 * 35.07288 * 12 11 9 14 14 C 1.53038 * 109.49284 * 274.99364 * 12 11 9 15 15 C 1.53041 * 109.53729 * 178.67810 * 14 12 11 16 16 C 1.53191 * 109.30786 * 61.36975 * 15 14 12 17 17 N 1.46926 * 108.77740 * 305.36253 * 16 15 14 18 18 C 1.36936 * 120.63203 * 233.58665 * 17 16 15 19 19 H 1.08006 * 119.99973 * 150.43817 * 18 17 16 20 20 C 1.38804 * 120.00274 * 330.44290 * 18 17 16 21 21 N 1.31620 * 119.99953 * 344.28253 * 20 18 17 22 22 Si 1.86802 * 120.00327 * 164.28812 * 20 18 17 23 23 H 1.48506 * 109.47153 * 266.30453 * 22 20 18 24 24 H 1.48499 * 109.47180 * 26.30176 * 22 20 18 25 25 H 1.48495 * 109.47561 * 146.30394 * 22 20 18 26 26 C 1.46928 * 118.73507 * 53.86244 * 17 16 15 27 27 H 1.08992 * 109.58666 * 65.92743 * 26 17 16 28 28 C 1.53006 * 109.58385 * 186.35236 * 26 17 16 29 29 H 1.09008 * 109.46878 * 270.02596 * 1 2 3 30 30 H 1.09006 * 109.47058 * 30.02208 * 1 2 3 31 31 H 1.08995 * 109.47208 * 150.02652 * 1 2 3 32 32 H 1.08000 * 127.33848 * 359.97404 * 3 2 1 33 33 H 1.09000 * 109.46995 * 149.71757 * 8 7 5 34 34 H 1.08998 * 109.47346 * 29.71676 * 8 7 5 35 35 H 0.97007 * 119.99933 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46135 * 58.66566 * 14 12 11 37 37 H 1.08995 * 109.46561 * 298.70339 * 14 12 11 38 38 H 1.08998 * 109.49885 * 301.41991 * 15 14 12 39 39 H 1.08994 * 109.49873 * 181.31750 * 15 14 12 40 40 H 1.09007 * 109.58340 * 185.57893 * 16 15 14 41 41 H 1.08998 * 109.70667 * 65.22581 * 16 15 14 42 42 H 0.97006 * 120.00109 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.46933 * 60.00456 * 28 26 17 44 44 H 1.09001 * 109.46782 * 179.97438 * 28 26 17 45 45 H 1.08990 * 109.47330 * 299.99895 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6304 0.0008 5 6 3.5607 -1.0573 0.0068 6 8 4.3673 -1.9702 0.0129 7 7 2.2222 -1.1604 0.0006 8 6 1.5577 -2.4661 0.0007 9 6 1.3305 -2.9141 -1.4201 10 8 1.6879 -2.2117 -2.3419 11 7 0.7291 -4.0948 -1.6663 12 6 0.5087 -4.5307 -3.0475 13 1 1.3400 -4.2010 -3.6706 14 6 -0.7949 -3.9247 -3.5724 15 6 -1.0094 -4.3528 -5.0260 16 6 -1.1244 -5.8789 -5.0929 17 7 0.0613 -6.4707 -4.4583 18 6 0.8255 -7.3891 -5.1274 19 1 1.8820 -7.4683 -4.9171 20 6 0.2426 -8.2181 -6.0758 21 7 -1.0663 -8.3490 -6.1201 22 14 1.3158 -9.1483 -7.2894 23 1 1.4494 -8.3575 -8.5393 24 1 2.6594 -9.3666 -6.6959 25 1 0.6919 -10.4600 -7.5979 26 6 0.4077 -6.0630 -3.0899 27 1 -0.3667 -6.4002 -2.4011 28 6 1.7520 -6.6787 -2.6962 29 1 -0.3633 0.0005 1.0278 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.8152 2.1367 -0.0004 33 1 0.5995 -2.3861 0.5141 34 1 2.1858 -3.1934 0.5150 35 1 0.4429 -4.6565 -0.9290 36 1 -0.7374 -2.8376 -3.5188 37 1 -1.6288 -4.2745 -2.9640 38 1 -0.1638 -4.0247 -5.6304 39 1 -1.9259 -3.9019 -5.4065 40 1 -1.1780 -6.1959 -6.1345 41 1 -2.0214 -6.2034 -4.5656 42 1 -1.4737 -8.9281 -6.7832 43 1 2.5247 -6.3341 -3.3835 44 1 2.0074 -6.3747 -1.6811 45 1 1.6818 -7.7653 -2.7436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994404981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -14.287206 kcal Electronic energy + Delta-G solvation = -28109.416904 eV Core-core repulsion = 24254.640449 eV Total energy + Delta-G solvation = -3854.776454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.42041 -39.54116 -37.81943 -37.51874 -34.41824 -32.91896 -32.54821 -31.75184 -30.58701 -29.18175 -27.09166 -26.06454 -25.03323 -23.98780 -22.38418 -20.98999 -20.76593 -20.23184 -19.41842 -18.28510 -17.64109 -17.39149 -16.42886 -15.83352 -15.71656 -15.41646 -15.07316 -14.83518 -14.37320 -14.02363 -13.94928 -13.87381 -13.83255 -13.67865 -13.40897 -13.04288 -12.76901 -12.63276 -12.35757 -11.83002 -11.75886 -11.58791 -11.37369 -11.16133 -10.95507 -10.80097 -10.61624 -10.40415 -10.33731 -10.25904 -10.16134 -10.06491 -9.84140 -9.57707 -9.37998 -8.80307 -8.49527 -8.14163 -6.72024 -5.83544 -3.28485 0.76309 1.19470 1.57424 1.93691 2.45595 2.54678 3.23397 3.36127 3.43662 3.44929 4.17367 4.44362 4.45113 4.60643 4.73810 4.77420 5.03785 5.12649 5.23360 5.25674 5.33219 5.38146 5.45624 5.52732 5.70208 5.82516 5.89138 6.00290 6.14884 6.27069 6.35820 6.45101 6.46070 6.52719 6.63200 6.68176 6.76840 6.93731 7.01273 7.11539 7.34047 7.54826 7.61574 7.78872 8.20280 8.40804 9.16068 9.78321 10.34412 11.25036 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.002716 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.254431 B =10305.911947 C =10915.573055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.113 3.887 3 C -0.241 4.241 4 S 0.003 5.997 5 C 0.487 3.513 6 O -0.470 6.470 7 N -0.516 5.516 8 C 0.079 3.921 9 C 0.495 3.505 10 O -0.526 6.526 11 N -0.713 5.713 12 C 0.131 3.869 13 H 0.086 0.914 14 C -0.115 4.115 15 C -0.140 4.140 16 C 0.170 3.830 17 N -0.582 5.582 18 C -0.254 4.254 19 H 0.071 0.929 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.278 1.278 25 H -0.291 1.291 26 C 0.168 3.832 27 H 0.029 0.971 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.192 0.808 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.398 0.602 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.254 0.746 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 17.154 16.282 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 C -0.379 4.379 4 S 0.246 5.754 5 C 0.169 3.831 6 O -0.349 6.349 7 N -0.236 5.236 8 C -0.051 4.051 9 C 0.278 3.722 10 O -0.402 6.402 11 N -0.363 5.363 12 C 0.025 3.975 13 H 0.104 0.896 14 C -0.153 4.153 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.305 5.305 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.218 1.218 26 C 0.060 3.940 27 H 0.046 0.954 28 C -0.195 4.195 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.209 0.791 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.231 0.769 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.327 17.589 15.479 23.468 hybrid contribution -0.946 -1.503 -0.395 1.820 sum 0.381 16.086 15.083 22.055 Atomic orbital electron populations 1.20778 0.86677 1.04936 1.03640 1.19368 0.95771 0.84757 0.99909 1.24821 0.93192 1.01200 1.18664 1.85082 1.08514 1.00849 1.81003 1.21550 0.83522 0.95836 0.82191 1.90976 1.48555 1.42437 1.52926 1.45595 1.06306 1.06614 1.65106 1.21756 1.01109 0.85253 0.96950 1.20601 0.78492 0.82313 0.90790 1.90756 1.50041 1.53885 1.45517 1.46081 1.60127 1.19925 1.10211 1.21953 0.98158 0.97258 0.80113 0.89590 1.21744 0.96821 0.99018 0.97763 1.22182 1.00361 1.00774 0.94686 1.20828 0.88087 0.86641 1.00022 1.44053 1.30256 1.46959 1.09226 1.19186 0.90975 1.10913 1.17250 0.91160 1.25080 0.95578 0.97391 1.01280 1.70030 1.08605 1.40067 1.35880 0.86283 0.79889 0.79000 0.81642 1.21403 1.20322 1.21759 1.20648 0.95289 0.89047 0.88982 0.95359 1.21820 0.97162 1.01839 0.98637 0.89552 0.88941 0.90614 0.79121 0.86069 0.85837 0.76869 0.93341 0.92704 0.92521 0.92950 0.89440 0.96226 0.93625 0.92689 0.94323 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 9.30 36.01 0.34 -0.24 16 2 C 0.11 1.01 6.59 -82.51 -0.54 0.47 16 3 C -0.24 -2.00 11.24 28.82 0.32 -1.67 16 4 S 0.00 0.03 22.97 -107.50 -2.47 -2.44 16 5 C 0.49 6.86 8.27 53.82 0.45 7.31 16 6 O -0.47 -8.14 17.55 5.08 0.09 -8.05 16 7 N -0.52 -5.90 2.09 -118.56 -0.25 -6.14 16 8 C 0.08 0.77 5.47 -5.19 -0.03 0.74 16 9 C 0.49 6.82 7.60 -10.99 -0.08 6.73 16 10 O -0.53 -9.69 16.10 5.56 0.09 -9.60 16 11 N -0.71 -9.39 4.60 -53.47 -0.25 -9.63 16 12 C 0.13 2.26 2.01 -67.59 -0.14 2.13 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 14 C -0.11 -1.94 5.46 -26.69 -0.15 -2.09 16 15 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 16 C 0.17 3.92 5.28 -3.71 -0.02 3.90 16 17 N -0.58 -13.92 2.98 -164.52 -0.49 -14.41 16 18 C -0.25 -6.71 8.57 -15.06 -0.13 -6.84 16 19 H 0.07 1.84 6.24 -52.48 -0.33 1.51 16 20 C 0.01 0.15 4.93 -17.43 -0.09 0.07 16 21 N -0.90 -25.48 11.23 55.49 0.62 -24.86 16 22 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.17 3.28 3.05 -67.37 -0.21 3.07 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 C -0.14 -2.53 7.84 37.16 0.29 -2.24 16 29 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.09 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 6.70 -51.93 -0.35 0.16 16 32 H 0.19 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.67 6.83 -51.93 -0.35 0.32 16 34 H 0.12 1.11 7.80 -51.93 -0.40 0.71 16 35 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 2.28 6.13 -51.93 -0.32 1.96 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.05 1.09 7.44 -51.93 -0.39 0.71 16 44 H 0.04 0.58 7.82 -51.93 -0.41 0.18 16 45 H 0.06 1.29 7.62 -51.93 -0.40 0.90 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -34.25 374.34 -8.81 -43.05 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.62 Total: 1.46 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.14 Total: 8.49 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.36 Total: -55.04 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.18 Total: -17.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.47 Total: -2.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.25 -8.81 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994404981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds