Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32565 * 121.64500 * 2 1 4 4 S 1.77229 * 105.32011 * 179.97438 * 3 2 1 5 5 C 1.72211 * 94.84755 * 359.80670 * 4 3 2 6 6 O 1.21819 * 127.06134 * 180.19928 * 5 4 3 7 7 N 1.34254 * 105.88129 * 0.32515 * 5 4 3 8 8 C 1.46504 * 121.37617 * 179.88152 * 7 5 4 9 9 C 1.50703 * 109.46780 * 269.71491 * 8 7 5 10 10 O 1.21274 * 119.99916 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99778 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00210 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.52040 * 35.07288 * 12 11 9 14 14 C 1.53038 * 109.49284 * 274.99364 * 12 11 9 15 15 C 1.53041 * 109.53729 * 178.67810 * 14 12 11 16 16 C 1.53191 * 109.30786 * 61.36975 * 15 14 12 17 17 N 1.46926 * 108.77740 * 305.36253 * 16 15 14 18 18 C 1.36936 * 120.63203 * 233.58665 * 17 16 15 19 19 H 1.08006 * 119.99973 * 150.43817 * 18 17 16 20 20 C 1.38804 * 120.00274 * 330.44290 * 18 17 16 21 21 N 1.31620 * 119.99953 * 344.28253 * 20 18 17 22 22 Si 1.86802 * 120.00327 * 164.28812 * 20 18 17 23 23 H 1.48506 * 109.47153 * 266.30453 * 22 20 18 24 24 H 1.48499 * 109.47180 * 26.30176 * 22 20 18 25 25 H 1.48495 * 109.47561 * 146.30394 * 22 20 18 26 26 C 1.46928 * 118.73507 * 53.86244 * 17 16 15 27 27 H 1.08992 * 109.58666 * 65.92743 * 26 17 16 28 28 C 1.53006 * 109.58385 * 186.35236 * 26 17 16 29 29 H 1.09008 * 109.46878 * 270.02596 * 1 2 3 30 30 H 1.09006 * 109.47058 * 30.02208 * 1 2 3 31 31 H 1.08995 * 109.47208 * 150.02652 * 1 2 3 32 32 H 1.08000 * 127.33848 * 359.97404 * 3 2 1 33 33 H 1.09000 * 109.46995 * 149.71757 * 8 7 5 34 34 H 1.08998 * 109.47346 * 29.71676 * 8 7 5 35 35 H 0.97007 * 119.99933 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46135 * 58.66566 * 14 12 11 37 37 H 1.08995 * 109.46561 * 298.70339 * 14 12 11 38 38 H 1.08998 * 109.49885 * 301.41991 * 15 14 12 39 39 H 1.08994 * 109.49873 * 181.31750 * 15 14 12 40 40 H 1.09007 * 109.58340 * 185.57893 * 16 15 14 41 41 H 1.08998 * 109.70667 * 65.22581 * 16 15 14 42 42 H 0.97006 * 120.00109 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.46933 * 60.00456 * 28 26 17 44 44 H 1.09001 * 109.46782 * 179.97438 * 28 26 17 45 45 H 1.08990 * 109.47330 * 299.99895 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6304 0.0008 5 6 3.5607 -1.0573 0.0068 6 8 4.3673 -1.9702 0.0129 7 7 2.2222 -1.1604 0.0006 8 6 1.5577 -2.4661 0.0007 9 6 1.3305 -2.9141 -1.4201 10 8 1.6879 -2.2117 -2.3419 11 7 0.7291 -4.0948 -1.6663 12 6 0.5087 -4.5307 -3.0475 13 1 1.3400 -4.2010 -3.6706 14 6 -0.7949 -3.9247 -3.5724 15 6 -1.0094 -4.3528 -5.0260 16 6 -1.1244 -5.8789 -5.0929 17 7 0.0613 -6.4707 -4.4583 18 6 0.8255 -7.3891 -5.1274 19 1 1.8820 -7.4683 -4.9171 20 6 0.2426 -8.2181 -6.0758 21 7 -1.0663 -8.3490 -6.1201 22 14 1.3158 -9.1483 -7.2894 23 1 1.4494 -8.3575 -8.5393 24 1 2.6594 -9.3666 -6.6959 25 1 0.6919 -10.4600 -7.5979 26 6 0.4077 -6.0630 -3.0899 27 1 -0.3667 -6.4002 -2.4011 28 6 1.7520 -6.6787 -2.6962 29 1 -0.3633 0.0005 1.0278 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.8152 2.1367 -0.0004 33 1 0.5995 -2.3861 0.5141 34 1 2.1858 -3.1934 0.5150 35 1 0.4429 -4.6565 -0.9290 36 1 -0.7374 -2.8376 -3.5188 37 1 -1.6288 -4.2745 -2.9640 38 1 -0.1638 -4.0247 -5.6304 39 1 -1.9259 -3.9019 -5.4065 40 1 -1.1780 -6.1959 -6.1345 41 1 -2.0214 -6.2034 -4.5656 42 1 -1.4737 -8.9281 -6.7832 43 1 2.5247 -6.3341 -3.3835 44 1 2.0074 -6.3747 -1.6811 45 1 1.6818 -7.7653 -2.7436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994404981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = -37.594140 kcal Electronic energy + Delta-G solvation = -28110.427568 eV Core-core repulsion = 24254.640449 eV Total energy + Delta-G solvation = -3855.787119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -42.31064 -40.78349 -39.19228 -38.62016 -35.94191 -34.34862 -33.60924 -33.34580 -31.61624 -30.55168 -28.17379 -27.38602 -26.81542 -24.94147 -23.83355 -22.37535 -22.05548 -21.37638 -20.90824 -19.07365 -18.76669 -18.37797 -18.16490 -17.25245 -16.81759 -16.64560 -16.44908 -15.93587 -15.61788 -15.56689 -15.23512 -15.06913 -14.80705 -14.61049 -14.55598 -14.40653 -14.29303 -13.54698 -13.36866 -13.24886 -13.07578 -12.85452 -12.73148 -12.56679 -12.54393 -12.39795 -12.11880 -12.02631 -11.86329 -11.79153 -11.66183 -11.34157 -11.26129 -11.14331 -10.55385 -10.48635 -10.08012 -8.96261 -8.66763 -7.88375 -5.34369 -0.13596 0.40242 0.83873 1.07130 1.43742 1.46491 1.47520 1.54009 1.65729 2.16112 2.51278 3.27005 3.48136 3.57741 3.72126 3.79392 3.89269 4.02585 4.09263 4.19449 4.21896 4.34840 4.49460 4.57310 4.59706 4.66379 4.73431 4.77369 4.86447 4.89660 4.94212 5.02164 5.11994 5.19388 5.25591 5.28265 5.41218 5.45886 5.57204 5.67648 5.68524 5.75621 6.18461 6.39858 6.49390 7.13843 7.17103 7.84825 8.35357 9.18090 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.002716 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.254431 B =10305.911947 C =10915.573055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.097 3.903 3 C -0.227 4.227 4 S -0.008 6.008 5 C 0.465 3.535 6 O -0.522 6.522 7 N -0.516 5.516 8 C 0.082 3.918 9 C 0.496 3.504 10 O -0.576 6.576 11 N -0.699 5.699 12 C 0.148 3.852 13 H 0.048 0.952 14 C -0.104 4.104 15 C -0.131 4.131 16 C 0.176 3.824 17 N -0.602 5.602 18 C -0.256 4.256 19 H 0.067 0.933 20 C -0.044 4.044 21 N -0.930 5.930 22 Si 0.957 3.043 23 H -0.290 1.290 24 H -0.271 1.271 25 H -0.292 1.292 26 C 0.165 3.835 27 H 0.042 0.958 28 C -0.129 4.129 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.228 0.772 33 H 0.173 0.827 34 H 0.132 0.868 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.009 0.991 42 H 0.249 0.751 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 18.997 18.567 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 C -0.364 4.364 4 S 0.235 5.765 5 C 0.149 3.851 6 O -0.406 6.406 7 N -0.236 5.236 8 C -0.046 4.046 9 C 0.282 3.718 10 O -0.455 6.455 11 N -0.352 5.352 12 C 0.041 3.959 13 H 0.066 0.934 14 C -0.143 4.143 15 C -0.170 4.170 16 C 0.051 3.949 17 N -0.325 5.325 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.217 1.217 24 H -0.196 1.196 25 H -0.219 1.219 26 C 0.059 3.941 27 H 0.060 0.940 28 C -0.187 4.187 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.245 0.755 33 H 0.190 0.810 34 H 0.150 0.850 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.040 19.463 17.821 26.389 hybrid contribution -0.535 -1.967 -1.069 2.301 sum -0.575 17.496 16.752 24.230 Atomic orbital electron populations 1.20924 0.83751 1.05303 1.05659 1.20021 0.97477 0.83935 0.99787 1.25382 0.90620 1.02779 1.17625 1.85085 1.11591 0.99357 1.80432 1.21969 0.84328 0.96380 0.82470 1.90929 1.50019 1.44173 1.55436 1.45717 1.05699 1.08027 1.64178 1.21948 1.03630 0.84909 0.94118 1.21279 0.76991 0.81510 0.92064 1.90743 1.51890 1.55331 1.47491 1.45804 1.60047 1.20294 1.09026 1.21387 0.97122 0.95446 0.81975 0.93405 1.21645 0.97018 0.99454 0.96178 1.22024 1.00753 0.97792 0.96469 1.20633 0.87550 0.89079 0.97672 1.44285 1.30159 1.46872 1.11223 1.19404 0.91212 1.10678 1.17286 0.91522 1.25708 0.96582 0.98769 1.02970 1.70151 1.09810 1.41086 1.36538 0.85404 0.78742 0.77644 0.79573 1.21702 1.19605 1.21904 1.20819 0.95901 0.90483 0.86932 0.93999 1.21738 0.96046 1.00651 1.00227 0.86572 0.87450 0.91343 0.75505 0.80992 0.84972 0.74502 0.92378 0.90745 0.94348 0.90661 0.93067 0.97304 0.94138 0.94835 0.90651 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.30 71.24 0.66 0.01 16 2 C 0.10 1.42 6.59 40.71 0.27 1.69 16 3 C -0.23 -3.06 11.24 66.67 0.75 -2.31 16 4 S -0.01 -0.17 22.97 -56.49 -1.30 -1.46 16 5 C 0.46 12.97 8.27 129.87 1.07 14.04 16 6 O -0.52 -18.57 17.55 -4.73 -0.08 -18.65 16 7 N -0.52 -10.74 2.09 -647.48 -1.35 -12.10 16 8 C 0.08 1.36 5.47 85.63 0.47 1.82 16 9 C 0.50 12.64 7.60 87.66 0.67 13.31 16 10 O -0.58 -20.75 16.10 -3.01 -0.05 -20.80 16 11 N -0.70 -16.67 4.60 -441.49 -2.03 -18.70 16 12 C 0.15 4.95 2.01 45.21 0.09 5.04 16 13 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 14 C -0.10 -3.33 5.46 30.62 0.17 -3.16 16 15 C -0.13 -4.94 6.08 30.67 0.19 -4.75 16 16 C 0.18 8.25 5.28 86.36 0.46 8.71 16 17 N -0.60 -29.14 2.98 -674.42 -2.01 -31.15 16 18 C -0.26 -13.79 8.57 84.03 0.72 -13.07 16 19 H 0.07 3.57 6.24 -2.91 -0.02 3.56 16 20 C -0.04 -2.46 4.93 84.86 0.42 -2.04 16 21 N -0.93 -53.90 11.23 21.65 0.24 -53.66 16 22 Si 0.96 45.17 29.58 68.60 2.03 47.20 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 C 0.17 6.30 3.05 45.12 0.14 6.44 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.13 -4.69 7.84 71.98 0.56 -4.13 16 29 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 30 H 0.11 0.44 8.10 -2.38 -0.02 0.42 16 31 H 0.07 0.60 6.70 -2.39 -0.02 0.59 16 32 H 0.23 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.17 1.03 6.83 -2.39 -0.02 1.01 16 34 H 0.13 2.03 7.80 -2.39 -0.02 2.02 16 35 H 0.42 6.76 8.60 -92.70 -0.80 5.96 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 2.76 6.13 -2.38 -0.01 2.75 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 43 H 0.03 1.34 7.44 -2.39 -0.02 1.32 16 44 H 0.07 2.14 7.82 -2.39 -0.02 2.12 16 45 H 0.05 1.96 7.62 -2.39 -0.02 1.94 16 Total: -1.00 -79.63 374.34 2.30 -77.33 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.22 Total: 10.38 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 6.63 Total: 21.62 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.15 Total: -115.60 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.13 Total: -39.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.30 Total: -1.46 kcal Total: -79.63 2.30 -77.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994404981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.736 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds