Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32561 * 121.64834 * 2 1 4 4 S 1.77230 * 105.32014 * 180.19827 * 3 2 1 5 5 C 1.72210 * 94.84832 * 359.76788 * 4 3 2 6 6 O 1.21821 * 127.05708 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88100 * 359.97438 * 5 4 3 8 8 C 1.46505 * 121.37819 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47097 * 90.02605 * 8 7 5 10 10 C 1.50699 * 109.47537 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99803 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00350 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.63178 * 359.97438 * 12 10 9 14 14 C 1.53159 * 108.76987 * 233.63011 * 13 12 10 15 15 C 1.53046 * 109.32667 * 305.35456 * 14 13 12 16 16 C 1.53039 * 109.52798 * 61.37318 * 15 14 13 17 17 H 1.08997 * 109.49901 * 58.58690 * 16 15 14 18 18 N 1.46495 * 109.50019 * 178.68853 * 16 15 14 19 19 C 1.36933 * 120.00261 * 204.99517 * 18 16 15 20 20 H 1.08003 * 120.00107 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00269 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00142 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99813 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46748 * 90.00192 * 23 21 19 25 25 H 1.48495 * 109.47433 * 209.99672 * 23 21 19 26 26 H 1.48496 * 109.47243 * 330.00512 * 23 21 19 27 27 C 1.46931 * 120.63030 * 179.97438 * 12 10 9 28 28 H 1.09005 * 109.47143 * 270.23719 * 1 2 3 29 29 H 1.08999 * 109.47050 * 30.23672 * 1 2 3 30 30 H 1.08996 * 109.47646 * 150.24113 * 1 2 3 31 31 H 1.08001 * 127.34030 * 359.94532 * 3 2 1 32 32 H 1.09000 * 109.46972 * 330.02620 * 8 7 5 33 33 H 1.08995 * 109.47044 * 210.02839 * 8 7 5 34 34 H 1.09005 * 109.47196 * 59.99677 * 9 8 7 35 35 H 1.09001 * 109.47364 * 300.00514 * 9 8 7 36 36 H 1.08999 * 109.58766 * 353.41859 * 13 12 10 37 37 H 1.09002 * 109.58364 * 113.69954 * 13 12 10 38 38 H 1.08996 * 109.48005 * 185.40991 * 14 13 12 39 39 H 1.08994 * 109.50349 * 65.31594 * 14 13 12 40 40 H 1.09002 * 109.46115 * 301.35771 * 15 14 13 41 41 H 1.09004 * 109.45806 * 181.38656 * 15 14 13 42 42 H 0.97001 * 119.99932 * 25.00302 * 18 16 15 43 43 H 0.97008 * 119.99867 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.58425 * 6.59260 * 27 12 10 45 45 H 1.08995 * 109.70793 * 246.22878 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0010 6 8 4.3672 -1.9703 -0.0020 7 7 2.2221 -1.1605 0.0052 8 6 1.5576 -2.4661 0.0103 9 6 1.3322 -2.9181 1.4545 10 6 0.6481 -4.2608 1.4598 11 8 0.3686 -4.8031 0.4115 12 7 0.3476 -4.8595 2.6292 13 6 0.6812 -4.2158 3.9072 14 6 1.4949 -5.1974 4.7558 15 6 0.7189 -6.5091 4.8967 16 6 0.5056 -7.1283 3.5135 17 1 1.4717 -7.3037 3.0404 18 7 -0.2098 -8.3992 3.6518 19 6 -0.0802 -9.3660 2.6908 20 1 0.5498 -9.1918 1.8310 21 6 -0.7584 -10.5701 2.8216 22 7 -0.6334 -11.4995 1.8981 23 14 -1.8486 -10.8712 4.3083 24 1 -3.2289 -10.4112 4.0111 25 1 -1.8674 -12.3224 4.6226 26 1 -1.3163 -10.1193 5.4729 27 6 -0.3199 -6.1682 2.6505 28 1 -0.3634 0.0043 1.0277 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3634 -0.8921 -0.5100 31 1 1.8153 2.1367 -0.0008 32 1 2.1838 -3.1945 -0.5049 33 1 0.5975 -2.3871 -0.4997 34 1 0.7061 -2.1896 1.9697 35 1 2.2923 -2.9970 1.9645 36 1 1.2705 -3.3179 3.7212 37 1 -0.2359 -3.9486 4.4321 38 1 1.6668 -4.7686 5.7430 39 1 2.4517 -5.3911 4.2711 40 1 -0.2481 -6.3110 5.3590 41 1 1.2850 -7.2006 5.5208 42 1 -0.7754 -8.5559 4.4241 43 1 -1.1077 -12.3408 1.9893 44 1 -0.3909 -6.5587 1.6353 45 1 -1.3193 -6.0644 3.0728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999357480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = -21.794811 kcal Electronic energy + Delta-G solvation = -27361.145904 eV Core-core repulsion = 23506.043896 eV Total energy + Delta-G solvation = -3855.102009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41076 -40.02776 -37.89572 -37.52624 -34.70492 -33.71268 -32.41405 -31.65574 -31.31470 -29.22221 -28.27151 -25.85887 -24.66346 -23.89268 -23.17539 -21.80519 -20.75844 -20.28758 -18.93529 -18.41041 -17.75603 -17.57737 -16.63547 -16.60099 -15.88267 -15.58658 -15.23332 -14.78008 -14.61981 -14.38446 -14.33971 -14.12246 -14.05059 -13.71904 -13.45296 -13.21795 -13.07660 -12.80222 -12.64053 -12.53510 -12.42635 -11.83336 -11.64246 -11.55530 -11.46192 -11.26525 -10.97167 -10.78511 -10.70956 -10.35686 -10.32259 -10.00500 -9.93857 -9.72284 -9.60452 -9.15588 -8.48183 -8.29523 -7.33262 -5.79535 -3.17402 0.63668 1.02335 1.45557 1.82725 2.37524 2.63385 3.08723 3.34040 3.36220 3.42557 4.06206 4.38949 4.41081 4.49075 4.55190 4.65626 4.72008 4.90109 4.93111 4.97169 5.05659 5.09387 5.11757 5.20592 5.30561 5.33217 5.40091 5.44708 5.58813 5.65778 5.73570 5.77599 5.83592 5.96629 6.02087 6.17895 6.32403 6.39981 6.56308 6.67368 6.84204 7.01148 7.49596 7.95861 8.21256 8.39012 9.15874 9.87371 10.05637 11.38394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.002338 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.341299 B =11973.967836 C =12147.333072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.105 3.895 3 C -0.242 4.242 4 S -0.005 6.005 5 C 0.479 3.521 6 O -0.466 6.466 7 N -0.533 5.533 8 C 0.115 3.885 9 C -0.155 4.155 10 C 0.516 3.484 11 O -0.537 6.537 12 N -0.605 5.605 13 C 0.106 3.894 14 C -0.131 4.131 15 C -0.129 4.129 16 C 0.173 3.827 17 H 0.060 0.940 18 N -0.742 5.742 19 C -0.249 4.249 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.930 5.930 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.092 3.908 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.191 0.809 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.096 0.904 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 30.583 1.966 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.006 4.006 3 C -0.380 4.380 4 S 0.238 5.762 5 C 0.161 3.839 6 O -0.345 6.345 7 N -0.254 5.254 8 C -0.010 4.010 9 C -0.196 4.196 10 C 0.303 3.697 11 O -0.415 6.415 12 N -0.338 5.338 13 C -0.017 4.017 14 C -0.169 4.169 15 C -0.168 4.168 16 C 0.062 3.938 17 H 0.078 0.922 18 N -0.384 5.384 19 C -0.379 4.379 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.577 5.577 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.032 4.032 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.208 0.792 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.035 30.162 1.187 30.454 hybrid contribution -2.020 -1.033 1.181 2.558 sum 2.015 29.129 2.368 29.294 Atomic orbital electron populations 1.20842 0.86560 1.04803 1.04164 1.19490 0.95923 0.84902 1.00257 1.24881 0.93143 1.01279 1.18725 1.85196 1.08571 1.01408 1.81052 1.21629 0.83817 0.95679 0.82754 1.91007 1.48544 1.42308 1.52643 1.46177 1.06395 1.07902 1.64880 1.21679 1.00125 0.82201 0.97036 1.21983 1.02918 0.96252 0.98418 1.20185 0.79170 0.86503 0.83878 1.90751 1.53957 1.65814 1.30934 1.48236 1.59233 1.21207 1.05163 1.21751 0.99566 0.95670 0.84714 1.21871 0.99363 0.96019 0.99691 1.21866 1.00160 0.96055 0.98699 1.20466 0.95188 0.85435 0.92726 0.92246 1.42717 1.56317 1.13473 1.25912 1.19096 1.24575 0.93299 1.00917 0.89064 1.24691 1.00044 0.96356 0.97804 1.69709 1.46424 1.07008 1.34565 0.86553 0.81216 0.77286 0.83462 1.21044 1.21675 1.20317 1.22723 0.95686 0.80598 1.04182 0.89508 0.89064 0.90077 0.79177 0.87592 0.87727 0.88535 0.88289 0.90360 0.91270 0.90840 0.91305 0.92127 0.91266 0.80460 0.92970 0.88578 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 9.69 36.00 0.35 -0.04 16 2 C 0.11 0.69 6.59 -82.51 -0.54 0.15 16 3 C -0.24 -1.42 11.24 28.82 0.32 -1.10 16 4 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16 5 C 0.48 5.64 8.27 53.82 0.45 6.09 16 6 O -0.47 -7.20 17.55 5.08 0.09 -7.11 16 7 N -0.53 -4.98 2.60 -117.28 -0.31 -5.29 16 8 C 0.11 1.16 4.56 -4.04 -0.02 1.14 16 9 C -0.15 -1.51 4.37 -27.89 -0.12 -1.63 16 10 C 0.52 7.30 7.70 -10.99 -0.08 7.22 16 11 O -0.54 -9.87 15.39 5.55 0.09 -9.78 16 12 N -0.60 -8.38 2.97 -172.76 -0.51 -8.89 16 13 C 0.11 1.05 6.34 -3.73 -0.02 1.03 16 14 C -0.13 -1.41 6.08 -26.63 -0.16 -1.57 16 15 C -0.13 -1.84 5.36 -26.69 -0.14 -1.98 16 16 C 0.17 3.23 2.92 -67.79 -0.20 3.03 16 17 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 18 N -0.74 -17.16 4.93 -53.29 -0.26 -17.42 16 19 C -0.25 -7.02 10.41 -15.06 -0.16 -7.18 16 20 H 0.09 2.82 8.06 -52.48 -0.42 2.39 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 23 Si 0.88 21.83 27.74 -169.99 -4.71 17.11 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 27 C 0.09 1.63 6.02 -3.69 -0.02 1.61 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.18 8.10 -51.93 -0.42 -0.24 16 30 H 0.08 0.35 6.18 -51.93 -0.32 0.03 16 31 H 0.19 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.11 1.34 7.76 -51.93 -0.40 0.94 16 33 H 0.10 0.93 6.07 -51.93 -0.32 0.61 16 34 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 35 H 0.10 0.99 7.69 -51.93 -0.40 0.59 16 36 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.36 8.12 5.66 -40.82 -0.23 7.89 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.10 2.06 7.00 -51.93 -0.36 1.69 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -35.70 375.76 -8.67 -44.38 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.57 Total: 5.58 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.45 Total: 6.87 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.31 Total: -60.20 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.17 Total: -16.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.70 -8.67 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999357480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.581 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds