Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.77229 * 127.33793 * 2 1 4 4 C 1.72220 * 94.84569 * 179.81197 * 3 2 1 5 5 O 1.21825 * 127.05630 * 180.20303 * 4 3 2 6 6 N 1.34240 * 105.88374 * 0.32262 * 4 3 2 7 7 C 1.46500 * 121.38248 * 179.87855 * 6 4 3 8 8 C 1.50694 * 109.47284 * 269.72180 * 7 6 4 9 9 O 1.21284 * 119.99775 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00303 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99838 * 359.97438 * 10 8 7 12 12 C 1.46498 * 120.00315 * 179.97438 * 10 8 7 13 13 C 1.53781 * 113.61237 * 63.22502 * 12 10 8 14 14 C 1.53778 * 87.07919 * 89.11963 * 13 12 10 15 15 N 1.46503 * 113.61257 * 270.79699 * 14 13 12 16 16 C 1.36934 * 120.00530 * 202.17187 * 15 14 13 17 17 H 1.08000 * 119.99517 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.00562 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99937 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46557 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46828 * 120.00245 * 20 18 16 23 23 H 1.48497 * 109.47023 * 240.00326 * 20 18 16 24 24 C 1.53776 * 87.17633 * 25.38640 * 14 13 12 25 25 C 1.32564 * 127.34327 * 180.02562 * 2 1 3 26 26 C 1.50703 * 121.64271 * 359.97305 * 25 2 1 27 27 H 1.09001 * 109.46781 * 269.99686 * 1 2 3 28 28 H 1.08993 * 109.47296 * 29.99589 * 1 2 3 29 29 H 1.08999 * 109.47148 * 149.99740 * 1 2 3 30 30 H 1.08998 * 109.47164 * 149.71425 * 7 6 4 31 31 H 1.08998 * 109.46454 * 29.72144 * 7 6 4 32 32 H 1.08993 * 109.47210 * 268.85957 * 11 10 8 33 33 H 1.09004 * 109.47145 * 28.85659 * 11 10 8 34 34 H 1.09000 * 109.46995 * 148.85496 * 11 10 8 35 35 H 1.09004 * 112.90734 * 291.97256 * 12 10 8 36 36 H 1.08999 * 113.61298 * 334.56469 * 13 12 10 37 37 H 1.08999 * 113.61124 * 203.66465 * 13 12 10 38 38 H 1.08994 * 113.61470 * 139.98575 * 14 13 12 39 39 H 0.97003 * 119.99766 * 22.16935 * 15 14 13 40 40 H 0.97004 * 120.00231 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.60852 * 89.16017 * 24 14 13 42 42 H 1.08996 * 113.61803 * 220.05872 * 24 14 13 43 43 H 1.09004 * 109.47117 * 270.02545 * 26 25 2 44 44 H 1.09000 * 109.47176 * 30.02619 * 26 25 2 45 45 H 1.08997 * 109.47071 * 150.02942 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4091 0.0000 4 6 4.0345 0.4840 0.0056 5 8 5.1760 0.9096 0.0112 6 7 3.6509 -0.8024 -0.0001 7 6 4.6313 -1.8910 -0.0002 8 6 4.9675 -2.2641 -1.4210 9 8 4.4397 -1.6787 -2.3428 10 7 5.8547 -3.2482 -1.6674 11 6 6.4927 -3.9550 -0.5540 12 6 6.1811 -3.6113 -3.0487 13 6 6.8518 -2.4772 -3.8416 14 6 8.1959 -3.0176 -3.3257 15 7 8.6108 -2.4349 -2.0472 16 6 9.9313 -2.4485 -1.6848 17 1 10.6670 -2.8885 -2.3418 18 6 10.3245 -1.8960 -0.4737 19 7 9.4280 -1.3593 0.3267 20 14 12.1258 -1.9152 0.0209 21 1 12.9246 -2.5717 -1.0450 22 1 12.6023 -0.5213 0.2087 23 1 12.2821 -2.6673 1.2917 24 6 7.5055 -4.3844 -3.1845 25 6 2.3111 -1.0539 -0.0005 26 6 1.7707 -2.4607 -0.0005 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 4.2133 -2.7566 0.5136 31 1 5.5357 -1.5653 0.5137 32 1 7.4244 -3.4538 -0.2917 33 1 5.8247 -3.9541 0.3074 34 1 6.7036 -4.9828 -0.8492 35 1 5.3469 -4.0770 -3.5734 36 1 6.6096 -1.4818 -3.4695 37 1 6.7302 -2.5679 -4.9210 38 1 8.9883 -3.0038 -4.0740 39 1 7.9501 -2.0394 -1.4573 40 1 9.7027 -0.9735 1.1733 41 1 7.5630 -4.9975 -4.0840 42 1 7.7903 -4.9264 -2.2828 43 1 1.6404 -2.7999 1.0272 44 1 0.8097 -2.4807 -0.5144 45 1 2.4712 -3.1190 -0.5142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999875939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = -6.442662 kcal Electronic energy + Delta-G solvation = -28787.751761 eV Core-core repulsion = 24933.315472 eV Total energy + Delta-G solvation = -3854.436289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.41844 -41.25516 -39.18479 -38.74248 -35.84771 -35.11468 -34.47538 -32.00095 -31.10985 -30.14259 -28.20400 -26.78495 -26.09411 -25.74755 -25.10269 -23.85811 -21.41345 -20.72229 -19.54971 -19.34764 -19.26715 -18.35432 -18.02515 -17.41740 -16.79493 -16.77346 -16.57705 -16.24039 -15.80098 -15.41270 -14.97595 -14.89659 -14.87296 -14.59772 -14.43416 -14.01464 -13.75062 -13.61772 -13.46933 -13.37908 -13.31464 -13.12749 -12.83942 -12.82534 -12.63085 -12.54746 -12.42670 -12.12133 -11.86136 -11.76482 -11.72782 -11.29157 -11.26590 -10.98865 -10.86767 -10.36384 -9.57805 -8.99975 -8.88990 -7.93711 -5.22758 -0.19559 0.35725 0.77077 1.03874 1.41542 1.44599 1.47220 1.55972 1.63865 2.07263 2.54450 3.27792 3.37777 3.50774 3.66276 3.68707 3.79634 3.89682 4.03220 4.10708 4.22662 4.27023 4.28494 4.33987 4.57378 4.61558 4.68063 4.75673 4.80052 4.86192 4.90800 4.98263 5.03998 5.06265 5.10089 5.22431 5.26835 5.38711 5.42454 5.50285 5.67324 5.69142 6.20073 6.26952 6.32197 7.01895 7.33535 8.09563 8.34177 9.28085 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.003837 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.008664 B = 7295.535117 C = 8411.739704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.199 4.199 3 S -0.008 6.008 4 C 0.460 3.540 5 O -0.524 6.524 6 N -0.513 5.513 7 C 0.086 3.914 8 C 0.499 3.501 9 O -0.569 6.569 10 N -0.580 5.580 11 C 0.066 3.934 12 C 0.132 3.868 13 C -0.161 4.161 14 C 0.142 3.858 15 N -0.717 5.717 16 C -0.241 4.241 17 H 0.077 0.923 18 C -0.068 4.068 19 N -0.961 5.961 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.304 1.304 23 H -0.289 1.289 24 C -0.153 4.153 25 C 0.087 3.913 26 C -0.095 4.095 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.025 0.975 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.376 0.624 40 H 0.248 0.752 41 H 0.119 0.881 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.895 -9.026 0.365 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.318 4.318 3 S 0.236 5.764 4 C 0.143 3.857 5 O -0.407 6.407 6 N -0.232 5.232 7 C -0.043 4.043 8 C 0.286 3.714 9 O -0.448 6.448 10 N -0.312 5.312 11 C -0.076 4.076 12 C 0.028 3.972 13 C -0.200 4.200 14 C 0.032 3.968 15 N -0.357 5.357 16 C -0.373 4.373 17 H 0.094 0.906 18 C -0.261 4.261 19 N -0.611 5.611 20 Si 0.798 3.202 21 H -0.190 1.190 22 H -0.232 1.232 23 H -0.216 1.216 24 C -0.193 4.193 25 C -0.022 4.022 26 C -0.153 4.153 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.210 0.790 40 H 0.057 0.943 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.413 -7.167 -0.118 22.581 hybrid contribution 1.952 -0.281 0.528 2.042 sum -19.461 -7.448 0.411 20.842 Atomic orbital electron populations 1.20307 0.82312 1.04578 1.04398 1.24083 1.01041 0.89718 1.16997 1.84844 0.97475 1.13025 1.81095 1.22069 0.94767 0.86156 0.82700 1.91022 1.21644 1.73043 1.54972 1.45669 1.07144 1.06220 1.64188 1.21824 0.94686 0.92341 0.95447 1.20896 0.79491 0.79480 0.91488 1.90668 1.54353 1.52928 1.46880 1.47522 1.40875 1.35241 1.07534 1.22160 0.98977 0.98232 0.88193 1.21925 0.97308 0.96523 0.81406 1.23728 0.97770 0.97540 1.00971 1.21484 0.93815 0.93526 0.87976 1.42471 1.05598 1.69116 1.18522 1.19650 0.85854 1.30812 1.00997 0.90556 1.25462 1.01168 1.01626 0.97797 1.69831 1.33713 1.45572 1.11979 0.85151 0.80703 0.76374 0.77947 1.19036 1.23224 1.21578 1.24022 0.93512 0.98078 1.03697 1.19915 0.80378 1.00500 1.01380 1.20936 1.02705 0.86142 1.05556 0.88653 0.90565 0.87860 0.81623 0.87930 0.92794 0.88992 0.88727 0.88596 0.95562 0.87081 0.92232 0.79006 0.94304 0.86283 0.90532 0.86794 0.86676 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.10 71.24 0.72 0.12 16 2 C -0.20 -4.17 6.72 24.53 0.16 -4.00 16 3 S -0.01 -0.24 22.97 -56.49 -1.30 -1.54 16 4 C 0.46 18.34 8.27 129.87 1.07 19.42 16 5 O -0.52 -26.75 17.55 -4.75 -0.08 -26.84 16 6 N -0.51 -16.36 2.09 -647.51 -1.35 -17.71 16 7 C 0.09 2.64 4.00 85.63 0.34 2.98 16 8 C 0.50 17.98 7.17 87.66 0.63 18.61 16 9 O -0.57 -24.18 15.38 -3.04 -0.05 -24.23 16 10 N -0.58 -19.11 2.08 -819.33 -1.71 -20.81 16 11 C 0.07 1.98 8.65 127.77 1.11 3.08 16 12 C 0.13 4.15 4.14 45.58 0.19 4.34 16 13 C -0.16 -6.00 7.13 31.12 0.22 -5.78 16 14 C 0.14 5.69 4.55 45.51 0.21 5.90 16 15 N -0.72 -36.32 4.06 -320.47 -1.30 -37.62 16 16 C -0.24 -13.31 9.97 84.03 0.84 -12.47 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 19 N -0.96 -58.99 13.06 21.65 0.28 -58.71 16 20 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 C -0.15 -4.56 7.17 31.18 0.22 -4.33 16 25 C 0.09 1.96 6.59 40.71 0.27 2.23 16 26 C -0.09 -1.17 9.07 71.24 0.65 -0.52 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.62 6.77 -2.39 -0.02 0.60 16 30 H 0.17 3.22 6.09 -2.39 -0.01 3.20 16 31 H 0.10 3.87 7.76 -2.39 -0.02 3.85 16 32 H 0.05 2.22 6.15 -2.39 -0.01 2.20 16 33 H 0.09 2.04 6.40 -2.39 -0.02 2.03 16 34 H 0.09 2.35 6.55 -2.39 -0.02 2.33 16 35 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.03 1.22 7.18 -2.39 -0.02 1.20 16 37 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.06 2.36 8.12 -2.39 -0.02 2.35 16 39 H 0.38 20.70 5.53 -92.71 -0.51 20.18 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.12 2.70 8.14 -2.38 -0.02 2.69 16 42 H 0.08 2.38 5.90 -2.39 -0.01 2.36 16 43 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.11 0.86 6.69 -2.39 -0.02 0.84 16 45 H 0.07 0.95 6.70 -2.39 -0.02 0.94 16 Total: -1.00 -84.28 371.92 4.14 -80.14 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.52 Total: 32.64 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 7.10 Total: 26.16 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -4.08 Total: -134.85 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.13 Total: -51.06 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.30 Total: -1.54 kcal Total: -84.28 4.14 -80.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999875939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.696 kcal (2) G-P(sol) polarization free energy of solvation -84.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds