Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77221 * 127.34345 * 2 1 4 4 C 1.72205 * 94.84812 * 180.21042 * 3 2 1 5 5 O 1.21832 * 127.05677 * 179.79911 * 4 3 2 6 6 N 1.34239 * 105.88562 * 359.83075 * 4 3 2 7 7 C 1.46503 * 121.38160 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47251 * 269.98149 * 7 6 4 9 9 O 1.21281 * 119.99973 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00192 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.62688 * 359.72152 * 10 8 7 12 12 C 1.52762 * 109.01078 * 233.58185 * 11 10 8 13 13 C 1.53049 * 109.38157 * 305.59240 * 12 11 10 14 14 C 1.53035 * 109.53714 * 61.23588 * 13 12 11 15 15 H 1.08994 * 109.50235 * 58.58569 * 14 13 12 16 16 N 1.46507 * 109.52250 * 178.66780 * 14 13 12 17 17 C 1.36931 * 119.99962 * 204.85430 * 16 14 13 18 18 H 1.08002 * 120.00002 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00044 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00116 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99788 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47034 * 90.00495 * 21 19 17 23 23 H 1.48498 * 109.47320 * 210.00432 * 21 19 17 24 24 H 1.48497 * 109.47230 * 330.00384 * 21 19 17 25 25 C 1.46928 * 120.63255 * 179.97438 * 10 8 7 26 26 C 1.32568 * 127.33597 * 179.90127 * 2 1 3 27 27 C 1.50703 * 121.64811 * 0.02562 * 26 2 1 28 28 H 1.08995 * 109.47477 * 270.09614 * 1 2 3 29 29 H 1.09001 * 109.46929 * 30.09582 * 1 2 3 30 30 H 1.09007 * 109.47325 * 150.09326 * 1 2 3 31 31 H 1.08996 * 109.46901 * 29.98428 * 7 6 4 32 32 H 1.09007 * 109.47106 * 149.98329 * 7 6 4 33 33 H 1.08999 * 109.58760 * 353.42110 * 11 10 8 34 34 H 1.09007 * 109.58741 * 113.84401 * 11 10 8 35 35 H 1.08990 * 109.56878 * 185.55334 * 12 11 10 36 36 H 1.09000 * 109.38346 * 65.50979 * 12 11 10 37 37 H 1.09003 * 109.45437 * 301.21830 * 13 12 11 38 38 H 1.08989 * 109.44773 * 181.25009 * 13 12 11 39 39 H 0.97004 * 119.99991 * 24.85866 * 16 14 13 40 40 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.58484 * 246.15992 * 25 10 8 42 42 H 1.08999 * 109.58562 * 6.44561 * 25 10 8 43 43 H 1.09002 * 109.47152 * 269.71198 * 27 26 2 44 44 H 1.09001 * 109.46980 * 149.71298 * 27 26 2 45 45 H 1.09004 * 109.47113 * 29.71279 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4089 0.0000 4 6 4.0344 0.4838 -0.0063 5 8 5.1760 0.9094 -0.0121 6 7 3.6507 -0.8026 -0.0042 7 6 4.6312 -1.8912 -0.0078 8 6 4.9612 -2.2653 -1.4298 9 8 4.4295 -1.6806 -2.3497 10 7 5.8474 -3.2497 -1.6793 11 6 6.5043 -3.9630 -0.5755 12 6 8.0174 -3.9070 -0.7774 13 6 8.3645 -4.4437 -2.1681 14 6 7.7004 -3.5697 -3.2344 15 1 8.0413 -2.5403 -3.1252 16 7 8.0586 -4.0648 -4.5659 17 6 8.0363 -3.2165 -5.6406 18 1 7.7542 -2.1826 -5.5067 19 6 8.3753 -3.6857 -6.9024 20 7 8.3533 -2.8705 -7.9354 21 14 8.8625 -5.4741 -7.1340 22 1 7.6526 -6.2822 -7.4309 23 1 9.8205 -5.5839 -8.2633 24 1 9.5018 -5.9778 -5.8919 25 6 6.1790 -3.6261 -3.0603 26 6 2.3110 -1.0540 0.0018 27 6 1.7705 -2.4608 0.0037 28 1 -0.3634 0.0017 1.0276 29 1 -0.3633 0.8891 -0.5153 30 1 -0.3634 -0.8909 -0.5124 31 1 5.5378 -1.5652 0.5019 32 1 4.2152 -2.7565 0.5084 33 1 6.2455 -3.4889 0.3712 34 1 6.1779 -5.0030 -0.5669 35 1 8.5097 -4.5158 -0.0192 36 1 8.3559 -2.8744 -0.6912 37 1 8.0042 -5.4682 -2.2621 38 1 9.4456 -4.4249 -2.3049 39 1 8.3116 -4.9935 -4.6862 40 1 8.5905 -3.1982 -8.8170 41 1 5.8255 -4.6381 -3.2580 42 1 5.7037 -2.9312 -3.7526 43 1 1.6447 -2.8004 1.0318 44 1 2.4688 -3.1190 -0.5134 45 1 0.8072 -2.4806 -0.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000991605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = -18.597510 kcal Electronic energy + Delta-G solvation = -27879.424080 eV Core-core repulsion = 24024.460716 eV Total energy + Delta-G solvation = -3854.963363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.43980 -39.74286 -37.82700 -37.39383 -34.74065 -33.80742 -32.46648 -31.43426 -30.56108 -29.75849 -28.61406 -25.82754 -24.89444 -24.02425 -23.33127 -21.83299 -20.62039 -20.01750 -19.04157 -18.42574 -17.71315 -17.57779 -17.00866 -16.07752 -15.66489 -15.38052 -15.17701 -14.64925 -14.38268 -14.31492 -14.19139 -14.09384 -13.79413 -13.70349 -13.31899 -13.17128 -13.09524 -12.82904 -12.70117 -12.60699 -12.46428 -12.19763 -11.73792 -11.57797 -11.28974 -11.10839 -10.97787 -10.79879 -10.73726 -10.33420 -10.19864 -10.09058 -9.95817 -9.61392 -9.41803 -9.15994 -8.52054 -8.01335 -7.33548 -5.79016 -3.17169 0.80714 1.22023 1.58179 1.97514 2.48321 2.55136 3.05474 3.33935 3.36017 3.42498 4.19568 4.26891 4.44330 4.55207 4.62972 4.70001 4.76138 4.87085 4.92118 5.02657 5.05257 5.05899 5.25956 5.27153 5.33375 5.37527 5.40209 5.53110 5.58508 5.64453 5.71787 5.80680 5.93811 5.97240 6.00295 6.16239 6.30291 6.51464 6.52418 6.65884 6.82485 7.17498 7.42159 7.96232 8.13929 8.39319 9.16145 9.87375 10.05535 11.38926 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.002885 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.441371 B = 9703.865624 C =10217.234776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.209 4.209 3 S 0.004 5.996 4 C 0.488 3.512 5 O -0.469 6.469 6 N -0.515 5.515 7 C 0.082 3.918 8 C 0.494 3.506 9 O -0.521 6.521 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.132 4.132 13 C -0.129 4.129 14 C 0.172 3.828 15 H 0.060 0.940 16 N -0.741 5.741 17 C -0.250 4.250 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.094 3.906 26 C 0.105 3.895 27 C -0.099 4.099 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -2.401 24.916 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.329 4.329 3 S 0.248 5.752 4 C 0.170 3.830 5 O -0.348 6.348 6 N -0.235 5.235 7 C -0.047 4.047 8 C 0.279 3.721 9 O -0.396 6.396 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.170 4.170 13 C -0.167 4.167 14 C 0.062 3.938 15 H 0.078 0.922 16 N -0.383 5.383 17 C -0.380 4.380 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.030 4.030 26 C -0.005 4.005 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.371 -0.255 24.215 28.160 hybrid contribution 0.881 -2.695 -0.442 2.869 sum -13.490 -2.950 23.773 27.493 Atomic orbital electron populations 1.20102 0.85721 1.03434 1.02638 1.23429 0.99636 0.92141 1.17652 1.85036 0.97802 1.11110 1.81261 1.21486 0.94668 0.84587 0.82214 1.90980 1.19258 1.71645 1.52961 1.45575 1.05730 1.06996 1.65211 1.21771 0.94684 0.91294 0.96933 1.20632 0.80230 0.80321 0.90896 1.90782 1.51562 1.51579 1.45686 1.48242 1.41599 1.35377 1.08543 1.21706 0.93730 0.97317 0.89075 1.21811 0.94711 1.02467 0.98048 1.21858 1.01493 0.99559 0.93826 1.20468 0.90915 0.97420 0.85043 0.92236 1.42709 1.81897 1.10004 1.03729 1.19100 1.39498 0.93911 0.85474 0.89100 1.24694 1.01338 0.97348 0.95468 1.69709 1.54410 1.34292 0.99242 0.86549 0.78323 0.86355 0.77261 1.21042 1.21665 1.20301 1.22753 0.99402 1.00762 0.80128 1.19168 0.81818 0.98152 1.01371 1.20762 1.02438 0.89215 1.03438 0.90734 0.90801 0.90319 0.85954 0.86252 0.90512 0.90951 0.90637 0.91228 0.92064 0.91191 0.80446 0.92956 0.91959 0.88670 0.89648 0.90806 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.10 36.01 0.36 0.00 16 2 C -0.21 -2.03 6.72 -36.22 -0.24 -2.27 16 3 S 0.00 0.05 22.96 -107.50 -2.47 -2.42 16 4 C 0.49 7.44 8.27 53.81 0.45 7.88 16 5 O -0.47 -8.64 17.55 5.07 0.09 -8.55 16 6 N -0.51 -6.45 2.09 -118.57 -0.25 -6.70 16 7 C 0.08 0.88 3.81 -5.19 -0.02 0.86 16 8 C 0.49 7.48 7.50 -10.99 -0.08 7.40 16 9 O -0.52 -10.52 15.84 5.56 0.09 -10.44 16 10 N -0.60 -8.44 2.98 -173.00 -0.52 -8.95 16 11 C 0.10 0.98 6.31 -3.93 -0.02 0.96 16 12 C -0.13 -1.37 6.07 -26.83 -0.16 -1.54 16 13 C -0.13 -1.82 5.36 -26.69 -0.14 -1.96 16 14 C 0.17 3.27 2.92 -67.79 -0.20 3.07 16 15 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 16 N -0.74 -17.29 4.93 -53.29 -0.26 -17.55 16 17 C -0.25 -7.14 10.41 -15.06 -0.16 -7.29 16 18 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 21 Si 0.89 21.93 27.74 -169.99 -4.71 17.21 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 25 C 0.09 1.68 6.02 -3.69 -0.02 1.65 16 26 C 0.10 1.06 6.59 -82.51 -0.54 0.52 16 27 C -0.10 -0.64 9.08 36.01 0.33 -0.32 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.37 6.76 -51.92 -0.35 0.02 16 31 H 0.12 1.22 7.34 -51.93 -0.38 0.84 16 32 H 0.12 0.76 6.65 -51.93 -0.35 0.41 16 33 H 0.08 0.49 5.93 -51.93 -0.31 0.18 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.55 6.70 -51.93 -0.35 0.20 16 45 H 0.09 0.48 6.68 -51.93 -0.35 0.14 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -37.93 373.91 -8.67 -46.60 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.49 Total: 4.90 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.56 Total: 9.10 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.25 Total: -62.04 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.47 Total: -2.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.93 -8.67 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000991605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.001 kcal (2) G-P(sol) polarization free energy of solvation -37.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds