Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77221 * 127.34345 * 2 1 4 4 C 1.72205 * 94.84812 * 180.21042 * 3 2 1 5 5 O 1.21832 * 127.05677 * 179.79911 * 4 3 2 6 6 N 1.34239 * 105.88562 * 359.83075 * 4 3 2 7 7 C 1.46503 * 121.38160 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47251 * 269.98149 * 7 6 4 9 9 O 1.21281 * 119.99973 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00192 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.62688 * 359.72152 * 10 8 7 12 12 C 1.52762 * 109.01078 * 233.58185 * 11 10 8 13 13 C 1.53049 * 109.38157 * 305.59240 * 12 11 10 14 14 C 1.53035 * 109.53714 * 61.23588 * 13 12 11 15 15 H 1.08994 * 109.50235 * 58.58569 * 14 13 12 16 16 N 1.46507 * 109.52250 * 178.66780 * 14 13 12 17 17 C 1.36931 * 119.99962 * 204.85430 * 16 14 13 18 18 H 1.08002 * 120.00002 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00044 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00116 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99788 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47034 * 90.00495 * 21 19 17 23 23 H 1.48498 * 109.47320 * 210.00432 * 21 19 17 24 24 H 1.48497 * 109.47230 * 330.00384 * 21 19 17 25 25 C 1.46928 * 120.63255 * 179.97438 * 10 8 7 26 26 C 1.32568 * 127.33597 * 179.90127 * 2 1 3 27 27 C 1.50703 * 121.64811 * 0.02562 * 26 2 1 28 28 H 1.08995 * 109.47477 * 270.09614 * 1 2 3 29 29 H 1.09001 * 109.46929 * 30.09582 * 1 2 3 30 30 H 1.09007 * 109.47325 * 150.09326 * 1 2 3 31 31 H 1.08996 * 109.46901 * 29.98428 * 7 6 4 32 32 H 1.09007 * 109.47106 * 149.98329 * 7 6 4 33 33 H 1.08999 * 109.58760 * 353.42110 * 11 10 8 34 34 H 1.09007 * 109.58741 * 113.84401 * 11 10 8 35 35 H 1.08990 * 109.56878 * 185.55334 * 12 11 10 36 36 H 1.09000 * 109.38346 * 65.50979 * 12 11 10 37 37 H 1.09003 * 109.45437 * 301.21830 * 13 12 11 38 38 H 1.08989 * 109.44773 * 181.25009 * 13 12 11 39 39 H 0.97004 * 119.99991 * 24.85866 * 16 14 13 40 40 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.58484 * 246.15992 * 25 10 8 42 42 H 1.08999 * 109.58562 * 6.44561 * 25 10 8 43 43 H 1.09002 * 109.47152 * 269.71198 * 27 26 2 44 44 H 1.09001 * 109.46980 * 149.71298 * 27 26 2 45 45 H 1.09004 * 109.47113 * 29.71279 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4089 0.0000 4 6 4.0344 0.4838 -0.0063 5 8 5.1760 0.9094 -0.0121 6 7 3.6507 -0.8026 -0.0042 7 6 4.6312 -1.8912 -0.0078 8 6 4.9612 -2.2653 -1.4298 9 8 4.4295 -1.6806 -2.3497 10 7 5.8474 -3.2497 -1.6793 11 6 6.5043 -3.9630 -0.5755 12 6 8.0174 -3.9070 -0.7774 13 6 8.3645 -4.4437 -2.1681 14 6 7.7004 -3.5697 -3.2344 15 1 8.0413 -2.5403 -3.1252 16 7 8.0586 -4.0648 -4.5659 17 6 8.0363 -3.2165 -5.6406 18 1 7.7542 -2.1826 -5.5067 19 6 8.3753 -3.6857 -6.9024 20 7 8.3533 -2.8705 -7.9354 21 14 8.8625 -5.4741 -7.1340 22 1 7.6526 -6.2822 -7.4309 23 1 9.8205 -5.5839 -8.2633 24 1 9.5018 -5.9778 -5.8919 25 6 6.1790 -3.6261 -3.0603 26 6 2.3110 -1.0540 0.0018 27 6 1.7705 -2.4608 0.0037 28 1 -0.3634 0.0017 1.0276 29 1 -0.3633 0.8891 -0.5153 30 1 -0.3634 -0.8909 -0.5124 31 1 5.5378 -1.5652 0.5019 32 1 4.2152 -2.7565 0.5084 33 1 6.2455 -3.4889 0.3712 34 1 6.1779 -5.0030 -0.5669 35 1 8.5097 -4.5158 -0.0192 36 1 8.3559 -2.8744 -0.6912 37 1 8.0042 -5.4682 -2.2621 38 1 9.4456 -4.4249 -2.3049 39 1 8.3116 -4.9935 -4.6862 40 1 8.5905 -3.1982 -8.8170 41 1 5.8255 -4.6381 -3.2580 42 1 5.7037 -2.9312 -3.7526 43 1 1.6447 -2.8004 1.0318 44 1 2.4688 -3.1190 -0.5134 45 1 0.8072 -2.4806 -0.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000991605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = -46.904850 kcal Electronic energy + Delta-G solvation = -27880.651578 eV Core-core repulsion = 24024.460716 eV Total energy + Delta-G solvation = -3856.190862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.42621 -40.91125 -38.96072 -38.65890 -36.41132 -34.65920 -34.06686 -32.98910 -31.61834 -30.56511 -29.88434 -26.82905 -25.84258 -25.64830 -24.47792 -23.18864 -21.99457 -21.03576 -20.23762 -19.58027 -19.29232 -18.76761 -18.06863 -17.24121 -16.80694 -16.63555 -16.51308 -16.17836 -15.72439 -15.52689 -15.10319 -14.96683 -14.90229 -14.77498 -14.52133 -14.33749 -14.12397 -13.90288 -13.65910 -13.52561 -13.45047 -13.29859 -12.99828 -12.86077 -12.63212 -12.44081 -12.12644 -11.98166 -11.89975 -11.89370 -11.83737 -11.43341 -11.32017 -11.24920 -11.10340 -10.41585 -9.91462 -9.32144 -8.92106 -8.08739 -5.46014 -0.20124 0.32930 0.73259 0.98591 1.33544 1.37084 1.40802 1.47655 1.60516 1.97699 2.43925 3.21332 3.27862 3.45507 3.52024 3.71331 3.91811 3.93811 4.01643 4.07092 4.08813 4.22172 4.24177 4.31568 4.55219 4.57235 4.66917 4.67887 4.73546 4.80724 4.86745 4.87968 4.96869 5.03377 5.08231 5.10879 5.32963 5.38501 5.41046 5.42199 5.62881 5.68494 6.12956 6.14649 6.31216 6.97503 7.00913 7.71718 7.95539 9.13393 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.002885 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.441371 B = 9703.865624 C =10217.234776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.201 4.201 3 S -0.012 6.012 4 C 0.466 3.534 5 O -0.523 6.523 6 N -0.515 5.515 7 C 0.088 3.912 8 C 0.487 3.513 9 O -0.586 6.586 10 N -0.599 5.599 11 C 0.097 3.903 12 C -0.127 4.127 13 C -0.120 4.120 14 C 0.167 3.833 15 H 0.018 0.982 16 N -0.742 5.742 17 C -0.243 4.243 18 H 0.036 0.964 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.241 1.241 25 C 0.108 3.892 26 C 0.088 3.912 27 C -0.096 4.096 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.176 0.824 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.372 0.628 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.930 -6.876 28.733 33.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.320 4.320 3 S 0.231 5.769 4 C 0.150 3.850 5 O -0.407 6.407 6 N -0.234 5.234 7 C -0.040 4.040 8 C 0.274 3.726 9 O -0.466 6.466 10 N -0.332 5.332 11 C -0.024 4.024 12 C -0.165 4.165 13 C -0.159 4.159 14 C 0.058 3.942 15 H 0.036 0.964 16 N -0.386 5.386 17 C -0.373 4.373 18 H 0.054 0.946 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.794 3.206 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.165 1.165 25 C -0.018 4.018 26 C -0.021 4.021 27 C -0.155 4.155 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.194 0.806 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.207 0.793 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.139 0.861 44 H 0.085 0.915 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.689 -4.785 28.145 32.576 hybrid contribution 1.176 -1.170 -1.611 2.313 sum -14.513 -5.954 26.533 30.824 Atomic orbital electron populations 1.20305 0.82782 1.04341 1.04455 1.24051 1.01040 0.90062 1.16876 1.85008 0.97978 1.13087 1.80786 1.21893 0.94686 0.85935 0.82519 1.90928 1.21146 1.73030 1.55551 1.45691 1.07156 1.06439 1.64157 1.22002 0.95503 0.92733 0.93772 1.21500 0.79425 0.79370 0.92287 1.90757 1.54097 1.53695 1.48052 1.48297 1.41429 1.35430 1.08051 1.22206 0.92446 0.99094 0.88649 1.21844 0.95957 1.02126 0.96596 1.21798 1.00615 0.99559 0.93884 1.20658 0.92106 0.96561 0.84872 0.96376 1.42591 1.82307 1.09665 1.03992 1.18913 1.38351 0.92500 0.87585 0.94568 1.25703 1.01861 1.03435 0.94720 1.69935 1.56396 1.37344 0.99924 0.85223 0.78119 0.78984 0.78252 1.19998 1.22177 1.16524 1.22174 0.97767 0.99905 0.81962 1.19874 0.80691 1.00261 1.01247 1.20942 1.02513 0.86225 1.05787 0.88343 0.90864 0.88286 0.84960 0.80632 0.86468 0.87546 0.86133 0.93000 0.89656 0.91676 0.79315 0.93137 0.90299 0.94495 0.86054 0.91529 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.10 71.24 0.72 0.17 16 2 C -0.20 -3.59 6.72 24.53 0.16 -3.42 16 3 S -0.01 -0.32 22.96 -56.49 -1.30 -1.61 16 4 C 0.47 14.80 8.27 129.88 1.07 15.88 16 5 O -0.52 -20.61 17.55 -4.77 -0.08 -20.69 16 6 N -0.52 -12.53 2.09 -647.49 -1.35 -13.89 16 7 C 0.09 1.70 3.81 85.63 0.33 2.02 16 8 C 0.49 14.69 7.50 87.66 0.66 15.35 16 9 O -0.59 -25.18 15.84 -3.03 -0.05 -25.22 16 10 N -0.60 -16.07 2.98 -819.65 -2.44 -18.51 16 11 C 0.10 1.35 6.31 86.22 0.54 1.90 16 12 C -0.13 -2.15 6.07 30.53 0.19 -1.96 16 13 C -0.12 -3.07 5.36 30.62 0.16 -2.91 16 14 C 0.17 6.50 2.92 45.08 0.13 6.63 16 15 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 16 N -0.74 -35.21 4.93 -322.51 -1.59 -36.80 16 17 C -0.24 -14.67 10.41 84.04 0.88 -13.80 16 18 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 20 N -0.99 -66.12 13.97 21.65 0.30 -65.82 16 21 Si 0.97 45.62 27.74 68.60 1.90 47.52 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.24 -9.85 6.52 99.48 0.65 -9.20 16 25 C 0.11 3.95 6.02 86.38 0.52 4.47 16 26 C 0.09 1.60 6.59 40.71 0.27 1.86 16 27 C -0.10 -0.85 9.08 71.24 0.65 -0.21 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.55 6.76 -2.38 -0.02 0.54 16 31 H 0.13 2.35 7.34 -2.39 -0.02 2.33 16 32 H 0.18 1.32 6.65 -2.38 -0.02 1.30 16 33 H 0.12 0.78 5.93 -2.39 -0.01 0.76 16 34 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.37 16.12 5.66 -92.71 -0.52 15.60 16 40 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.04 1.77 7.00 -2.39 -0.02 1.76 16 43 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.07 0.73 6.70 -2.39 -0.02 0.72 16 45 H 0.11 0.67 6.68 -2.38 -0.02 0.66 16 Total: -1.00 -96.31 373.91 2.57 -93.74 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.44 Total: 18.85 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.74 Total: 22.43 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -5.08 Total: -135.01 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.13 Total: -45.92 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.30 Total: -1.61 kcal Total: -96.31 2.57 -93.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000991605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.837 kcal (2) G-P(sol) polarization free energy of solvation -96.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds