Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.77228 * 127.34023 * 2 1 4 4 C 1.72201 * 94.84894 * 180.02562 * 3 2 1 5 5 O 1.21834 * 127.06037 * 180.02562 * 4 3 2 6 6 N 1.34245 * 105.88589 * 359.97438 * 4 3 2 7 7 C 1.46499 * 121.37997 * 180.27317 * 6 4 3 8 8 C 1.50707 * 109.47218 * 269.71636 * 7 6 4 9 9 O 1.21277 * 119.99563 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00086 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.62901 * 0.02562 * 10 8 7 12 12 C 1.53194 * 108.77834 * 126.36979 * 11 10 8 13 13 C 1.53041 * 109.31171 * 54.62860 * 12 11 10 14 14 C 1.53042 * 109.54023 * 298.63804 * 13 12 11 15 15 H 1.08999 * 109.49941 * 301.38078 * 14 13 12 16 16 N 1.46500 * 109.49839 * 181.31633 * 14 13 12 17 17 C 1.36940 * 119.99869 * 154.99985 * 16 14 13 18 18 H 1.07999 * 119.99922 * 0.02562 * 17 16 14 19 19 C 1.38819 * 119.99523 * 180.02562 * 17 16 14 20 20 N 1.31612 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99481 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47401 * 90.00187 * 21 19 17 23 23 H 1.48494 * 109.47174 * 210.00081 * 21 19 17 24 24 H 1.48504 * 109.47484 * 329.99853 * 21 19 17 25 25 C 1.46926 * 120.62742 * 179.72068 * 10 8 7 26 26 C 1.32561 * 127.34007 * 179.97438 * 2 1 3 27 27 C 1.50696 * 121.64781 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47013 * 269.99764 * 1 2 3 29 29 H 1.09001 * 109.46982 * 30.00557 * 1 2 3 30 30 H 1.09002 * 109.47017 * 150.00019 * 1 2 3 31 31 H 1.08992 * 109.47637 * 29.72000 * 7 6 4 32 32 H 1.09004 * 109.47006 * 149.71957 * 7 6 4 33 33 H 1.09001 * 109.58705 * 246.15252 * 11 10 8 34 34 H 1.08998 * 109.58994 * 6.57853 * 11 10 8 35 35 H 1.08998 * 109.50111 * 174.58549 * 12 11 10 36 36 H 1.09005 * 109.49347 * 294.65141 * 12 11 10 37 37 H 1.09001 * 109.46230 * 58.65856 * 13 12 11 38 38 H 1.08997 * 109.46124 * 178.63314 * 13 12 11 39 39 H 0.96997 * 120.00117 * 335.00368 * 16 14 13 40 40 H 0.97007 * 120.00161 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.58745 * 353.41767 * 25 10 8 42 42 H 1.08994 * 109.58600 * 113.84979 * 25 10 8 43 43 H 1.09001 * 109.47151 * 269.97691 * 27 26 2 44 44 H 1.08999 * 109.47425 * 29.97620 * 27 26 2 45 45 H 1.09005 * 109.47591 * 149.97570 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4840 -0.0008 5 8 5.1760 0.9097 -0.0006 6 7 3.6508 -0.8024 -0.0004 7 6 4.6313 -1.8909 0.0051 8 6 4.9680 -2.2709 -1.4139 9 8 4.4411 -1.6894 -2.3386 10 7 5.8546 -3.2569 -1.6552 11 6 6.5006 -3.9708 -0.5454 12 6 6.2829 -5.4755 -0.7337 13 6 6.7795 -5.8890 -2.1210 14 6 5.9786 -5.1471 -3.1935 15 1 4.9193 -5.3784 -3.0817 16 7 6.4333 -5.5670 -4.5213 17 6 5.5906 -5.4693 -5.5962 18 1 4.5909 -5.0822 -5.4652 19 6 6.0213 -5.8677 -6.8543 20 7 7.2394 -6.3398 -7.0139 21 14 4.8720 -5.7337 -8.3207 22 1 5.0368 -4.4030 -8.9589 23 1 5.1978 -6.7978 -9.3038 24 1 3.4676 -5.8938 -7.8653 25 6 6.1883 -3.6428 -3.0330 26 6 2.3111 -1.0539 0.0005 27 6 1.7707 -2.4607 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.5356 -1.5628 0.5176 32 1 4.2131 -2.7541 0.5229 33 1 7.5688 -3.7536 -0.5437 34 1 6.0596 -3.6532 0.3995 35 1 6.8378 -6.0217 0.0291 36 1 5.2207 -5.7034 -0.6441 37 1 7.8358 -5.6383 -2.2182 38 1 6.6481 -6.9635 -2.2483 39 1 7.3313 -5.9143 -4.6391 40 1 7.5403 -6.6186 -7.8929 41 1 5.5413 -3.1089 -3.7289 42 1 7.2304 -3.3983 -3.2387 43 1 1.6405 -2.7998 1.0282 44 1 0.8096 -2.4808 -0.5133 45 1 2.4712 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000991606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = -23.801851 kcal Electronic energy + Delta-G solvation = -27895.571251 eV Core-core repulsion = 24040.382211 eV Total energy + Delta-G solvation = -3855.189040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.43686 -39.70275 -37.83320 -37.32657 -34.61079 -33.79707 -32.44295 -31.32940 -30.46741 -29.67021 -28.20142 -25.78505 -24.85570 -24.10661 -23.38834 -21.99504 -20.61643 -19.89765 -19.01223 -18.41191 -17.68631 -17.14498 -16.99151 -16.04859 -15.72171 -15.43334 -15.01184 -14.68945 -14.31681 -14.20106 -14.15040 -14.01591 -13.81076 -13.56810 -13.43809 -13.21236 -13.08303 -12.81805 -12.61710 -12.48764 -12.40873 -12.14564 -11.60081 -11.42588 -11.13432 -11.11532 -10.89183 -10.74891 -10.66992 -10.25776 -10.21994 -10.10220 -9.89769 -9.74629 -9.39958 -9.12746 -8.47112 -8.02288 -7.05746 -5.83089 -3.13336 0.79218 1.21489 1.57096 1.96665 2.49328 2.56303 3.09567 3.42358 3.48054 3.48785 4.21785 4.29602 4.45440 4.53769 4.71420 4.74131 4.78591 4.89293 4.95274 5.06403 5.09753 5.12737 5.28451 5.38349 5.41823 5.45334 5.49606 5.56113 5.60241 5.70802 5.83152 5.92420 5.97939 6.07268 6.11999 6.26088 6.39910 6.51806 6.60332 6.74800 6.91356 7.15329 7.47049 7.66795 8.16484 8.34870 9.46817 9.99996 10.35068 11.39042 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003049 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.759772 B = 9180.263621 C =10120.506986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.209 4.209 3 S 0.003 5.997 4 C 0.489 3.511 5 O -0.474 6.474 6 N -0.514 5.514 7 C 0.082 3.918 8 C 0.494 3.506 9 O -0.525 6.525 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.129 4.129 13 C -0.127 4.127 14 C 0.170 3.830 15 H 0.050 0.950 16 N -0.717 5.717 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.092 3.908 26 C 0.107 3.893 27 C -0.101 4.101 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 6.744 22.632 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.329 4.329 3 S 0.246 5.754 4 C 0.171 3.829 5 O -0.353 6.353 6 N -0.234 5.234 7 C -0.047 4.047 8 C 0.279 3.721 9 O -0.401 6.401 10 N -0.336 5.336 11 C -0.019 4.019 12 C -0.168 4.168 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.358 5.358 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.032 4.032 26 C -0.003 4.003 27 C -0.160 4.160 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.212 8.667 21.966 25.727 hybrid contribution 0.317 -1.409 -1.011 1.763 sum -9.895 7.258 20.954 24.283 Atomic orbital electron populations 1.20106 0.85690 1.03456 1.02661 1.23423 0.99638 0.92016 1.17801 1.84996 0.97854 1.11240 1.81295 1.21479 0.94632 0.84604 0.82213 1.90962 1.19295 1.71740 1.53303 1.45569 1.05782 1.06992 1.65066 1.21785 0.94619 0.91246 0.97080 1.20613 0.80073 0.80571 0.90835 1.90762 1.51753 1.52297 1.45275 1.48276 1.42075 1.34494 1.08705 1.21808 0.98448 0.92914 0.88776 1.21884 1.02022 0.94491 0.98394 1.21833 1.00224 1.01037 0.93445 1.20383 0.97173 0.90281 0.86323 0.93221 1.42372 1.15967 1.75388 1.02074 1.19251 0.95404 1.36054 0.86909 0.91089 1.24749 0.96691 1.01440 0.97655 1.69657 1.16836 1.48606 1.22790 0.86190 0.79982 0.77320 0.82708 1.21551 1.21701 1.20664 1.22768 1.01055 0.99451 0.79918 1.19195 0.81771 0.98232 1.01102 1.20779 1.02567 0.89142 1.03505 0.90714 0.90842 0.90243 0.86049 0.86152 0.90882 0.90619 0.90759 0.91541 0.91925 0.91248 0.78017 0.93395 0.89130 0.91891 0.89592 0.88896 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.10 36.01 0.36 -0.01 16 2 C -0.21 -2.06 6.72 -36.22 -0.24 -2.30 16 3 S 0.00 0.03 22.96 -107.50 -2.47 -2.44 16 4 C 0.49 7.31 8.27 53.82 0.45 7.75 16 5 O -0.47 -8.45 17.55 5.07 0.09 -8.37 16 6 N -0.51 -6.48 2.09 -118.57 -0.25 -6.73 16 7 C 0.08 0.90 3.81 -5.19 -0.02 0.88 16 8 C 0.49 7.60 7.49 -10.98 -0.08 7.52 16 9 O -0.53 -10.62 15.84 5.56 0.09 -10.53 16 10 N -0.60 -8.72 2.98 -173.05 -0.52 -9.23 16 11 C 0.10 1.04 6.34 -3.71 -0.02 1.01 16 12 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 13 C -0.13 -1.85 5.36 -26.69 -0.14 -1.99 16 14 C 0.17 3.22 2.91 -68.05 -0.20 3.02 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 N -0.72 -17.48 5.12 -53.54 -0.27 -17.75 16 17 C -0.25 -6.76 9.93 -15.06 -0.15 -6.91 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.09 1.72 5.98 -3.95 -0.02 1.69 16 26 C 0.11 1.11 6.59 -82.51 -0.54 0.57 16 27 C -0.10 -0.73 9.07 36.00 0.33 -0.40 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.41 6.77 -51.93 -0.35 0.06 16 31 H 0.12 1.21 7.60 -51.93 -0.39 0.81 16 32 H 0.12 0.84 6.39 -51.93 -0.33 0.51 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.50 5.93 -51.93 -0.31 0.20 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.56 6.69 -51.93 -0.35 0.22 16 45 H 0.07 0.64 6.70 -51.93 -0.35 0.29 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -35.94 377.02 -9.03 -44.96 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.53 Total: 4.97 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.55 Total: 8.99 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.31 Total: -60.79 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.47 Total: -2.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.94 -9.03 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000991606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.163 kcal (2) G-P(sol) polarization free energy of solvation -35.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds