Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.77228 * 127.34023 * 2 1 4 4 C 1.72201 * 94.84894 * 180.02562 * 3 2 1 5 5 O 1.21834 * 127.06037 * 180.02562 * 4 3 2 6 6 N 1.34245 * 105.88589 * 359.97438 * 4 3 2 7 7 C 1.46499 * 121.37997 * 180.27317 * 6 4 3 8 8 C 1.50707 * 109.47218 * 269.71636 * 7 6 4 9 9 O 1.21277 * 119.99563 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00086 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.62901 * 0.02562 * 10 8 7 12 12 C 1.53194 * 108.77834 * 126.36979 * 11 10 8 13 13 C 1.53041 * 109.31171 * 54.62860 * 12 11 10 14 14 C 1.53042 * 109.54023 * 298.63804 * 13 12 11 15 15 H 1.08999 * 109.49941 * 301.38078 * 14 13 12 16 16 N 1.46500 * 109.49839 * 181.31633 * 14 13 12 17 17 C 1.36940 * 119.99869 * 154.99985 * 16 14 13 18 18 H 1.07999 * 119.99922 * 0.02562 * 17 16 14 19 19 C 1.38819 * 119.99523 * 180.02562 * 17 16 14 20 20 N 1.31612 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99481 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47401 * 90.00187 * 21 19 17 23 23 H 1.48494 * 109.47174 * 210.00081 * 21 19 17 24 24 H 1.48504 * 109.47484 * 329.99853 * 21 19 17 25 25 C 1.46926 * 120.62742 * 179.72068 * 10 8 7 26 26 C 1.32561 * 127.34007 * 179.97438 * 2 1 3 27 27 C 1.50696 * 121.64781 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47013 * 269.99764 * 1 2 3 29 29 H 1.09001 * 109.46982 * 30.00557 * 1 2 3 30 30 H 1.09002 * 109.47017 * 150.00019 * 1 2 3 31 31 H 1.08992 * 109.47637 * 29.72000 * 7 6 4 32 32 H 1.09004 * 109.47006 * 149.71957 * 7 6 4 33 33 H 1.09001 * 109.58705 * 246.15252 * 11 10 8 34 34 H 1.08998 * 109.58994 * 6.57853 * 11 10 8 35 35 H 1.08998 * 109.50111 * 174.58549 * 12 11 10 36 36 H 1.09005 * 109.49347 * 294.65141 * 12 11 10 37 37 H 1.09001 * 109.46230 * 58.65856 * 13 12 11 38 38 H 1.08997 * 109.46124 * 178.63314 * 13 12 11 39 39 H 0.96997 * 120.00117 * 335.00368 * 16 14 13 40 40 H 0.97007 * 120.00161 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.58745 * 353.41767 * 25 10 8 42 42 H 1.08994 * 109.58600 * 113.84979 * 25 10 8 43 43 H 1.09001 * 109.47151 * 269.97691 * 27 26 2 44 44 H 1.08999 * 109.47425 * 29.97620 * 27 26 2 45 45 H 1.09005 * 109.47591 * 149.97570 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4840 -0.0008 5 8 5.1760 0.9097 -0.0006 6 7 3.6508 -0.8024 -0.0004 7 6 4.6313 -1.8909 0.0051 8 6 4.9680 -2.2709 -1.4139 9 8 4.4411 -1.6894 -2.3386 10 7 5.8546 -3.2569 -1.6552 11 6 6.5006 -3.9708 -0.5454 12 6 6.2829 -5.4755 -0.7337 13 6 6.7795 -5.8890 -2.1210 14 6 5.9786 -5.1471 -3.1935 15 1 4.9193 -5.3784 -3.0817 16 7 6.4333 -5.5670 -4.5213 17 6 5.5906 -5.4693 -5.5962 18 1 4.5909 -5.0822 -5.4652 19 6 6.0213 -5.8677 -6.8543 20 7 7.2394 -6.3398 -7.0139 21 14 4.8720 -5.7337 -8.3207 22 1 5.0368 -4.4030 -8.9589 23 1 5.1978 -6.7978 -9.3038 24 1 3.4676 -5.8938 -7.8653 25 6 6.1883 -3.6428 -3.0330 26 6 2.3111 -1.0539 0.0005 27 6 1.7707 -2.4607 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.5356 -1.5628 0.5176 32 1 4.2131 -2.7541 0.5229 33 1 7.5688 -3.7536 -0.5437 34 1 6.0596 -3.6532 0.3995 35 1 6.8378 -6.0217 0.0291 36 1 5.2207 -5.7034 -0.6441 37 1 7.8358 -5.6383 -2.2182 38 1 6.6481 -6.9635 -2.2483 39 1 7.3313 -5.9143 -4.6391 40 1 7.5403 -6.6186 -7.8929 41 1 5.5413 -3.1089 -3.7289 42 1 7.2304 -3.3983 -3.2387 43 1 1.6405 -2.7998 1.0282 44 1 0.8096 -2.4808 -0.5133 45 1 2.4712 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000991606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = -48.897055 kcal Electronic energy + Delta-G solvation = -27896.659461 eV Core-core repulsion = 24040.382211 eV Total energy + Delta-G solvation = -3856.277250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.41896 -40.89127 -38.92025 -38.60968 -36.28594 -34.65292 -33.97381 -32.77864 -31.48625 -30.43844 -29.65035 -26.81908 -25.92776 -25.73723 -24.48382 -23.27605 -21.87093 -20.92880 -20.18934 -19.28163 -19.15681 -18.76250 -18.03540 -17.19947 -16.91128 -16.67811 -16.36992 -16.06202 -15.61537 -15.43908 -15.25694 -14.95577 -14.92059 -14.79494 -14.51041 -14.15759 -14.04156 -13.72178 -13.66164 -13.49377 -13.39251 -13.11340 -12.94005 -12.86714 -12.55716 -12.42229 -12.23156 -12.04277 -11.91299 -11.89298 -11.71584 -11.36429 -11.30315 -11.21031 -11.08286 -10.40403 -9.83557 -9.06266 -8.91320 -8.01602 -5.30915 -0.18820 0.33155 0.72681 0.99496 1.38758 1.42006 1.44464 1.51866 1.59611 1.97689 2.50961 3.28062 3.32214 3.49440 3.68510 3.75847 3.95819 3.97958 4.04367 4.08648 4.16973 4.25303 4.31156 4.36126 4.54908 4.57654 4.66721 4.71447 4.73982 4.85308 4.86971 4.87824 5.01311 5.04093 5.08140 5.15532 5.36231 5.38751 5.40535 5.44850 5.52695 5.63785 6.13095 6.21180 6.32564 6.98058 7.27788 8.00558 8.24450 9.21086 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003049 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.759772 B = 9180.263621 C =10120.506986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.201 4.201 3 S -0.007 6.007 4 C 0.468 3.532 5 O -0.521 6.521 6 N -0.515 5.515 7 C 0.087 3.913 8 C 0.488 3.512 9 O -0.585 6.585 10 N -0.598 5.598 11 C 0.095 3.905 12 C -0.118 4.118 13 C -0.120 4.120 14 C 0.170 3.830 15 H 0.038 0.962 16 N -0.731 5.731 17 C -0.245 4.245 18 H 0.066 0.934 19 C -0.067 4.067 20 N -0.964 5.964 21 Si 0.967 3.033 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.270 1.270 25 C 0.108 3.892 26 C 0.088 3.912 27 C -0.098 4.098 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.171 0.829 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.377 0.623 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 5.609 25.778 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.320 4.320 3 S 0.237 5.763 4 C 0.151 3.849 5 O -0.405 6.405 6 N -0.234 5.234 7 C -0.041 4.041 8 C 0.276 3.724 9 O -0.465 6.465 10 N -0.331 5.331 11 C -0.026 4.026 12 C -0.157 4.157 13 C -0.159 4.159 14 C 0.060 3.940 15 H 0.056 0.944 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.084 0.916 19 C -0.260 4.260 20 N -0.614 5.614 21 Si 0.796 3.204 22 H -0.219 1.219 23 H -0.215 1.215 24 H -0.195 1.195 25 C -0.018 4.018 26 C -0.021 4.021 27 C -0.156 4.156 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.189 0.811 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.209 0.791 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.123 0.877 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.173 7.507 25.193 28.969 hybrid contribution 0.836 -1.012 -1.939 2.342 sum -11.338 6.494 23.254 26.673 Atomic orbital electron populations 1.20304 0.82908 1.04306 1.04439 1.24022 1.01010 0.90206 1.16769 1.84966 0.97796 1.12763 1.80767 1.21866 0.94728 0.85781 0.82513 1.90915 1.20984 1.72969 1.55624 1.45677 1.07021 1.06532 1.64179 1.21990 0.95603 0.92610 0.93870 1.21461 0.79025 0.79625 0.92296 1.90736 1.53954 1.54257 1.47534 1.48293 1.42035 1.34736 1.08014 1.22254 0.99170 0.92381 0.88767 1.21877 1.03020 0.94744 0.96027 1.21762 0.99491 0.99988 0.94637 1.20560 0.97167 0.90800 0.85441 0.94419 1.42545 1.15208 1.75703 1.03578 1.19515 0.95535 1.34543 0.88136 0.91577 1.25484 0.98210 1.02185 1.00156 1.69786 1.18381 1.50243 1.22990 0.85247 0.78755 0.76833 0.79603 1.21935 1.21485 1.19501 1.22150 0.99121 0.98473 0.82086 1.19813 0.80836 1.00087 1.01326 1.20930 1.02464 0.86518 1.05718 0.88365 0.90720 0.88523 0.84606 0.81137 0.89982 0.85897 0.86803 0.90654 0.91985 0.91778 0.79088 0.93819 0.93746 0.93062 0.86091 0.87669 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.10 71.24 0.72 0.15 16 2 C -0.20 -3.54 6.72 24.54 0.16 -3.38 16 3 S -0.01 -0.16 22.96 -56.49 -1.30 -1.46 16 4 C 0.47 14.09 8.27 129.87 1.07 15.16 16 5 O -0.52 -19.25 17.55 -4.78 -0.08 -19.33 16 6 N -0.51 -12.25 2.09 -647.50 -1.35 -13.61 16 7 C 0.09 1.68 3.81 85.64 0.33 2.01 16 8 C 0.49 14.69 7.49 87.66 0.66 15.35 16 9 O -0.58 -24.48 15.84 -3.02 -0.05 -24.53 16 10 N -0.60 -16.70 2.98 -819.81 -2.44 -19.14 16 11 C 0.10 1.54 6.34 86.36 0.55 2.08 16 12 C -0.12 -1.92 6.08 30.67 0.19 -1.74 16 13 C -0.12 -3.32 5.36 30.62 0.16 -3.16 16 14 C 0.17 6.54 2.91 44.92 0.13 6.67 16 15 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 16 N -0.73 -36.75 5.12 -323.29 -1.66 -38.40 16 17 C -0.25 -13.94 9.93 84.03 0.83 -13.10 16 18 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 19 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 20 N -0.96 -59.05 13.06 21.65 0.28 -58.77 16 21 Si 0.97 47.26 29.55 68.60 2.03 49.28 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 25 C 0.11 4.14 5.98 86.21 0.52 4.65 16 26 C 0.09 1.62 6.59 40.71 0.27 1.89 16 27 C -0.10 -1.03 9.07 71.23 0.65 -0.39 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.62 6.77 -2.39 -0.02 0.61 16 31 H 0.14 2.29 7.60 -2.39 -0.02 2.27 16 32 H 0.17 1.49 6.39 -2.38 -0.02 1.48 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.12 0.90 5.93 -2.39 -0.01 0.89 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.38 20.04 7.80 -92.71 -0.72 19.31 16 40 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 41 H 0.04 2.10 7.01 -2.39 -0.02 2.09 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.10 0.87 6.69 -2.39 -0.02 0.85 16 45 H 0.06 0.86 6.70 -2.38 -0.02 0.85 16 Total: -1.00 -85.86 377.02 2.43 -83.43 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.30 Total: 19.77 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.70 Total: 22.75 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.17 Total: -129.92 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.13 Total: -43.86 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.30 Total: -1.46 kcal Total: -85.86 2.43 -83.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000991606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.538 kcal (2) G-P(sol) polarization free energy of solvation -85.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds