Wall clock time and date at job start Sat Apr 11 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32562 * 121.64589 * 2 1 4 4 S 1.77223 * 105.32272 * 179.97438 * 3 2 1 5 5 C 1.72212 * 94.84630 * 359.97438 * 4 3 2 6 6 O 1.21823 * 127.05589 * 179.97438 * 5 4 3 7 7 N 1.34241 * 105.88333 * 0.26242 * 5 4 3 8 8 C 1.46499 * 121.38166 * 179.73755 * 7 5 4 9 9 C 1.50696 * 109.47117 * 90.02433 * 8 7 5 10 10 O 1.21285 * 119.99888 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00323 * 180.02562 * 9 8 7 12 12 C 1.46927 * 120.62748 * 359.97438 * 11 9 8 13 13 C 1.53188 * 108.77474 * 233.58989 * 12 11 9 14 14 C 1.53041 * 109.31292 * 305.36291 * 13 12 11 15 15 C 1.53039 * 109.53533 * 61.36824 * 14 13 12 16 16 H 1.09003 * 109.50101 * 58.58710 * 15 14 13 17 17 N 1.46501 * 109.49793 * 178.68363 * 15 14 13 18 18 C 1.46506 * 120.00091 * 59.99840 * 17 15 14 19 19 C 1.36936 * 120.00020 * 239.99946 * 17 15 14 20 20 H 1.07998 * 120.00297 * 22.07070 * 19 17 15 21 21 C 1.38814 * 120.00104 * 202.06579 * 19 17 15 22 22 N 1.31628 * 119.99834 * 12.40670 * 21 19 17 23 23 Si 1.86797 * 120.00182 * 192.40190 * 21 19 17 24 24 H 1.48508 * 109.47158 * 60.00391 * 23 21 19 25 25 H 1.48500 * 109.47250 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47471 * 300.00366 * 23 21 19 27 27 C 1.46919 * 120.63309 * 179.72094 * 11 9 8 28 28 H 1.08998 * 109.47205 * 0.02679 * 1 2 3 29 29 H 1.08999 * 109.47000 * 120.02728 * 1 2 3 30 30 H 1.08997 * 109.47360 * 240.02576 * 1 2 3 31 31 H 1.08004 * 127.33917 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47629 * 210.02544 * 8 7 5 33 33 H 1.09004 * 109.47334 * 330.02764 * 8 7 5 34 34 H 1.09001 * 109.58687 * 353.37470 * 12 11 9 35 35 H 1.09000 * 109.58391 * 113.65771 * 12 11 9 36 36 H 1.08995 * 109.50269 * 65.32016 * 13 12 11 37 37 H 1.09006 * 109.49979 * 185.38487 * 13 12 11 38 38 H 1.09004 * 109.46337 * 181.38894 * 14 13 12 39 39 H 1.08999 * 109.46253 * 301.34843 * 14 13 12 40 40 H 1.08997 * 109.46766 * 94.30872 * 18 17 15 41 41 H 1.08995 * 109.47026 * 214.30454 * 18 17 15 42 42 H 1.08993 * 109.46879 * 334.31016 * 18 17 15 43 43 H 0.96999 * 119.99729 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.58893 * 246.20170 * 27 11 9 45 45 H 1.09003 * 109.59033 * 6.62337 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6304 0.0008 5 6 3.5607 -1.0573 0.0018 6 8 4.3674 -1.9701 0.0022 7 7 2.2222 -1.1604 -0.0044 8 6 1.5577 -2.4660 -0.0112 9 6 1.3231 -2.9177 1.4072 10 8 1.6758 -2.2176 2.3327 11 7 0.7213 -4.0995 1.6474 12 6 0.2880 -4.9582 0.5367 13 6 -1.1942 -5.2967 0.7244 14 6 -1.4016 -5.9101 2.1111 15 6 -0.9978 -4.8969 3.1846 16 1 -1.5945 -3.9915 3.0731 17 7 -1.2263 -5.4734 4.5118 18 6 -0.5321 -6.7018 4.9063 19 6 -2.0886 -4.8642 5.3838 20 1 -2.8530 -4.1986 5.0109 21 6 -1.9804 -5.1021 6.7471 22 7 -0.9149 -5.7081 7.2268 23 14 -3.3466 -4.5622 7.9009 24 1 -4.6131 -5.2371 7.5184 25 1 -2.9917 -4.9304 9.2950 26 1 -3.5219 -3.0906 7.8063 27 6 0.4912 -4.5562 3.0247 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5143 -0.8897 30 1 -0.3634 -0.5134 0.8902 31 1 1.8152 2.1367 -0.0004 32 1 0.6022 -2.3848 -0.5294 33 1 2.1886 -3.1921 -0.5240 34 1 0.4258 -4.4316 -0.4076 35 1 0.8768 -5.8755 0.5328 36 1 -1.7890 -4.3876 0.6361 37 1 -1.5041 -6.0099 -0.0394 38 1 -2.4514 -6.1746 2.2379 39 1 -0.7876 -6.8055 2.2076 40 1 0.3785 -6.4465 5.4482 41 1 -1.1822 -7.2964 5.5480 42 1 -0.2762 -7.2763 4.0161 43 1 -0.8391 -5.8740 8.1795 44 1 1.0946 -5.4424 3.2215 45 1 0.7631 -3.7642 3.7226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027677913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:18 Heat of formation + Delta-G solvation = -2.426121 kcal Electronic energy + Delta-G solvation = -28231.282563 eV Core-core repulsion = 24377.020444 eV Total energy + Delta-G solvation = -3854.262119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.40404 -39.68966 -37.74181 -37.36139 -35.18276 -32.88382 -32.36651 -31.36636 -30.48397 -28.83355 -27.03490 -26.04495 -25.04547 -23.96175 -23.35178 -21.80543 -21.02149 -19.62924 -18.77011 -18.20398 -17.71726 -17.15098 -16.78840 -15.99430 -15.62775 -15.32153 -14.95458 -14.87919 -14.38059 -14.24861 -14.00790 -13.87063 -13.82377 -13.73480 -13.32935 -13.03133 -12.73357 -12.67789 -12.42931 -12.22279 -11.94984 -11.74459 -11.31763 -11.26341 -11.09818 -10.82936 -10.70663 -10.46112 -10.41725 -10.26368 -10.25863 -10.19227 -9.88153 -9.81808 -9.43723 -8.63895 -8.42623 -8.09104 -6.80743 -5.75490 -3.21867 0.81092 1.25342 1.62635 1.97994 2.50848 2.57721 3.10071 3.37661 3.42791 3.43554 4.24137 4.31110 4.45087 4.47248 4.73179 4.80538 4.80735 5.00473 5.14043 5.17267 5.18460 5.33242 5.38581 5.43478 5.46952 5.49865 5.65425 5.81066 5.88919 5.90871 6.02659 6.14884 6.29397 6.41430 6.51323 6.56033 6.71776 6.85288 6.89832 7.15442 7.35105 7.48432 7.68862 7.77797 8.17518 8.36201 9.19682 9.82190 10.30290 11.29212 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.003003 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.390435 B = 9320.291705 C = 9934.129169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.113 3.887 3 C -0.240 4.240 4 S 0.002 5.998 5 C 0.487 3.513 6 O -0.473 6.473 7 N -0.516 5.516 8 C 0.082 3.918 9 C 0.495 3.505 10 O -0.525 6.525 11 N -0.601 5.601 12 C 0.105 3.895 13 C -0.130 4.130 14 C -0.135 4.135 15 C 0.171 3.829 16 H 0.064 0.936 17 N -0.591 5.591 18 C 0.161 3.839 19 C -0.259 4.259 20 H 0.068 0.932 21 C 0.005 3.995 22 N -0.906 5.906 23 Si 0.906 3.094 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.098 3.902 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.192 0.808 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 8.238 -21.125 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.003 3.997 3 C -0.378 4.378 4 S 0.245 5.755 5 C 0.170 3.830 6 O -0.352 6.352 7 N -0.237 5.237 8 C -0.047 4.047 9 C 0.280 3.720 10 O -0.401 6.401 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.169 4.169 14 C -0.174 4.174 15 C 0.061 3.939 16 H 0.083 0.917 17 N -0.313 5.313 18 C 0.017 3.983 19 C -0.389 4.389 20 H 0.086 0.914 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.736 3.264 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C -0.026 4.026 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.209 0.791 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.528 8.618 -20.390 22.416 hybrid contribution -1.828 -0.604 0.824 2.094 sum 1.700 8.014 -19.567 21.213 Atomic orbital electron populations 1.20790 0.86622 1.05086 1.03657 1.19389 0.95832 0.84713 0.99774 1.24844 0.93090 1.01175 1.18681 1.85044 1.08656 1.00822 1.81017 1.21547 0.83513 0.95835 0.82149 1.90961 1.48608 1.42506 1.53141 1.45628 1.06307 1.06697 1.65054 1.21782 1.00760 0.85043 0.97099 1.20605 0.78693 0.81915 0.90822 1.90768 1.50316 1.53839 1.45201 1.48296 1.58116 1.18490 1.08662 1.21802 0.96347 0.95041 0.88663 1.21898 0.94873 1.01340 0.98752 1.22104 1.02065 0.99796 0.93450 1.20691 0.92097 0.94793 0.86309 0.91749 1.43939 1.50713 1.25181 1.11422 1.20802 0.96974 0.86503 0.94041 1.19170 1.07372 1.25248 0.87080 0.91406 1.25032 0.97099 1.00371 0.96917 1.70064 1.26388 1.46001 1.12546 0.86314 0.81572 0.78459 0.80043 1.21057 1.21583 1.20897 1.22714 0.99449 1.00289 0.80100 0.88914 0.90202 0.89711 0.79089 0.86153 0.86056 0.90699 0.91000 0.91675 0.91028 0.91553 0.92152 0.95314 0.93635 0.98246 0.93596 0.91877 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.01 36.01 0.32 -0.38 16 2 C 0.11 1.13 6.59 -82.51 -0.54 0.59 16 3 C -0.24 -2.19 11.17 28.82 0.32 -1.87 16 4 S 0.00 0.02 22.97 -107.50 -2.47 -2.45 16 5 C 0.49 7.19 8.27 53.82 0.45 7.63 16 6 O -0.47 -8.38 17.55 5.08 0.09 -8.29 16 7 N -0.52 -6.38 2.09 -118.57 -0.25 -6.63 16 8 C 0.08 0.89 4.09 -5.20 -0.02 0.87 16 9 C 0.49 7.63 7.77 -10.98 -0.09 7.54 16 10 O -0.53 -10.66 15.84 5.55 0.09 -10.58 16 11 N -0.60 -8.84 2.97 -172.53 -0.51 -9.35 16 12 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 13 C -0.13 -1.38 6.08 -26.61 -0.16 -1.55 16 14 C -0.13 -2.05 5.13 -26.69 -0.14 -2.18 16 15 C 0.17 3.31 2.75 -67.61 -0.19 3.13 16 16 H 0.06 1.31 7.86 -51.93 -0.41 0.90 16 17 N -0.59 -14.34 2.82 -173.11 -0.49 -14.83 16 18 C 0.16 3.87 7.91 59.85 0.47 4.34 16 19 C -0.26 -7.02 9.60 -15.06 -0.14 -7.16 16 20 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.00 0.13 5.11 -17.43 -0.09 0.04 16 22 N -0.91 -26.33 10.63 55.49 0.59 -25.74 16 23 Si 0.91 21.77 29.57 -169.99 -5.03 16.74 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.10 1.85 5.81 -3.51 -0.02 1.83 16 28 H 0.09 0.44 7.99 -51.93 -0.41 0.03 16 29 H 0.08 0.38 7.62 -51.93 -0.40 -0.02 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.19 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.12 0.82 6.37 -51.93 -0.33 0.49 16 33 H 0.12 1.20 7.60 -51.93 -0.39 0.80 16 34 H 0.07 0.51 5.93 -51.93 -0.31 0.20 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.93 6.71 -51.93 -0.35 0.59 16 40 H 0.03 0.76 7.41 -51.93 -0.39 0.37 16 41 H 0.04 1.18 7.20 -51.93 -0.37 0.81 16 42 H 0.00 -0.02 6.46 -51.93 -0.34 -0.35 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.06 1.23 7.52 -51.93 -0.39 0.83 16 45 H 0.09 2.09 7.00 -51.93 -0.36 1.72 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -35.17 371.97 -8.75 -43.92 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.53 Total: -2.26 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 0.15 Total: 13.87 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.66 Total: -56.56 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.18 Total: -18.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.47 Total: -2.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.17 -8.75 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027677913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.493 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds