Wall clock time and date at job start Sat Apr 11 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32562 * 121.64589 * 2 1 4 4 S 1.77223 * 105.32272 * 179.97438 * 3 2 1 5 5 C 1.72212 * 94.84630 * 359.97438 * 4 3 2 6 6 O 1.21823 * 127.05589 * 179.97438 * 5 4 3 7 7 N 1.34241 * 105.88333 * 0.26242 * 5 4 3 8 8 C 1.46499 * 121.38166 * 179.73755 * 7 5 4 9 9 C 1.50696 * 109.47117 * 90.02433 * 8 7 5 10 10 O 1.21285 * 119.99888 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00323 * 180.02562 * 9 8 7 12 12 C 1.46927 * 120.62748 * 359.97438 * 11 9 8 13 13 C 1.53188 * 108.77474 * 233.58989 * 12 11 9 14 14 C 1.53041 * 109.31292 * 305.36291 * 13 12 11 15 15 C 1.53039 * 109.53533 * 61.36824 * 14 13 12 16 16 H 1.09003 * 109.50101 * 58.58710 * 15 14 13 17 17 N 1.46501 * 109.49793 * 178.68363 * 15 14 13 18 18 C 1.46506 * 120.00091 * 59.99840 * 17 15 14 19 19 C 1.36936 * 120.00020 * 239.99946 * 17 15 14 20 20 H 1.07998 * 120.00297 * 22.07070 * 19 17 15 21 21 C 1.38814 * 120.00104 * 202.06579 * 19 17 15 22 22 N 1.31628 * 119.99834 * 12.40670 * 21 19 17 23 23 Si 1.86797 * 120.00182 * 192.40190 * 21 19 17 24 24 H 1.48508 * 109.47158 * 60.00391 * 23 21 19 25 25 H 1.48500 * 109.47250 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47471 * 300.00366 * 23 21 19 27 27 C 1.46919 * 120.63309 * 179.72094 * 11 9 8 28 28 H 1.08998 * 109.47205 * 0.02679 * 1 2 3 29 29 H 1.08999 * 109.47000 * 120.02728 * 1 2 3 30 30 H 1.08997 * 109.47360 * 240.02576 * 1 2 3 31 31 H 1.08004 * 127.33917 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47629 * 210.02544 * 8 7 5 33 33 H 1.09004 * 109.47334 * 330.02764 * 8 7 5 34 34 H 1.09001 * 109.58687 * 353.37470 * 12 11 9 35 35 H 1.09000 * 109.58391 * 113.65771 * 12 11 9 36 36 H 1.08995 * 109.50269 * 65.32016 * 13 12 11 37 37 H 1.09006 * 109.49979 * 185.38487 * 13 12 11 38 38 H 1.09004 * 109.46337 * 181.38894 * 14 13 12 39 39 H 1.08999 * 109.46253 * 301.34843 * 14 13 12 40 40 H 1.08997 * 109.46766 * 94.30872 * 18 17 15 41 41 H 1.08995 * 109.47026 * 214.30454 * 18 17 15 42 42 H 1.08993 * 109.46879 * 334.31016 * 18 17 15 43 43 H 0.96999 * 119.99729 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.58893 * 246.20170 * 27 11 9 45 45 H 1.09003 * 109.59033 * 6.62337 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6304 0.0008 5 6 3.5607 -1.0573 0.0018 6 8 4.3674 -1.9701 0.0022 7 7 2.2222 -1.1604 -0.0044 8 6 1.5577 -2.4660 -0.0112 9 6 1.3231 -2.9177 1.4072 10 8 1.6758 -2.2176 2.3327 11 7 0.7213 -4.0995 1.6474 12 6 0.2880 -4.9582 0.5367 13 6 -1.1942 -5.2967 0.7244 14 6 -1.4016 -5.9101 2.1111 15 6 -0.9978 -4.8969 3.1846 16 1 -1.5945 -3.9915 3.0731 17 7 -1.2263 -5.4734 4.5118 18 6 -0.5321 -6.7018 4.9063 19 6 -2.0886 -4.8642 5.3838 20 1 -2.8530 -4.1986 5.0109 21 6 -1.9804 -5.1021 6.7471 22 7 -0.9149 -5.7081 7.2268 23 14 -3.3466 -4.5622 7.9009 24 1 -4.6131 -5.2371 7.5184 25 1 -2.9917 -4.9304 9.2950 26 1 -3.5219 -3.0906 7.8063 27 6 0.4912 -4.5562 3.0247 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5143 -0.8897 30 1 -0.3634 -0.5134 0.8902 31 1 1.8152 2.1367 -0.0004 32 1 0.6022 -2.3848 -0.5294 33 1 2.1886 -3.1921 -0.5240 34 1 0.4258 -4.4316 -0.4076 35 1 0.8768 -5.8755 0.5328 36 1 -1.7890 -4.3876 0.6361 37 1 -1.5041 -6.0099 -0.0394 38 1 -2.4514 -6.1746 2.2379 39 1 -0.7876 -6.8055 2.2076 40 1 0.3785 -6.4465 5.4482 41 1 -1.1822 -7.2964 5.5480 42 1 -0.2762 -7.2763 4.0161 43 1 -0.8391 -5.8740 8.1795 44 1 1.0946 -5.4424 3.2215 45 1 0.7631 -3.7642 3.7226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027677913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:16 Heat of formation + Delta-G solvation = -26.218440 kcal Electronic energy + Delta-G solvation = -28232.314276 eV Core-core repulsion = 24377.020444 eV Total energy + Delta-G solvation = -3855.293831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -42.37823 -40.89392 -38.96425 -38.58919 -36.82661 -34.18251 -33.46588 -32.84062 -31.49516 -30.25727 -28.09574 -27.89664 -26.18030 -25.35189 -24.59485 -23.08318 -22.07694 -20.93960 -20.02390 -19.07511 -18.91872 -18.66075 -18.17354 -17.19950 -16.97443 -16.64052 -16.38361 -15.98618 -15.67710 -15.32995 -15.25934 -15.21015 -14.81222 -14.59018 -14.42589 -14.39956 -14.17952 -13.86591 -13.53312 -13.41720 -13.13112 -12.94524 -12.80988 -12.60028 -12.49659 -12.23690 -12.19523 -12.13215 -12.08341 -11.77680 -11.68503 -11.40421 -11.29327 -11.27522 -10.65865 -10.49921 -9.77949 -8.98623 -8.79978 -7.85875 -5.34445 -0.15370 0.38287 0.81006 1.03642 1.40298 1.44026 1.46246 1.52969 1.62736 1.98081 2.48988 3.27739 3.29952 3.53148 3.60660 3.72876 3.96330 3.98879 4.05742 4.11236 4.20361 4.22461 4.36243 4.53315 4.58936 4.66286 4.68771 4.69695 4.76847 4.85904 4.92276 4.92789 5.04545 5.17357 5.24368 5.24798 5.41374 5.43690 5.56499 5.59987 5.65682 5.68751 6.15079 6.29207 6.33700 6.99129 7.11711 7.83776 8.26314 9.16932 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.003003 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.390435 B = 9320.291705 C = 9934.129169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.095 3.905 3 C -0.225 4.225 4 S -0.004 6.004 5 C 0.465 3.535 6 O -0.521 6.521 7 N -0.518 5.518 8 C 0.088 3.912 9 C 0.489 3.511 10 O -0.586 6.586 11 N -0.598 5.598 12 C 0.096 3.904 13 C -0.119 4.119 14 C -0.125 4.125 15 C 0.170 3.830 16 H 0.051 0.949 17 N -0.609 5.609 18 C 0.180 3.820 19 C -0.267 4.267 20 H 0.071 0.929 21 C -0.054 4.054 22 N -0.940 5.940 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.296 1.296 26 H -0.278 1.278 27 C 0.114 3.886 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.229 0.771 32 H 0.172 0.828 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.058 0.942 40 H -0.006 1.006 41 H 0.018 0.982 42 H 0.035 0.965 43 H 0.248 0.752 44 H 0.053 0.947 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 9.159 -24.833 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.014 4.014 3 C -0.362 4.362 4 S 0.239 5.761 5 C 0.149 3.851 6 O -0.405 6.405 7 N -0.238 5.238 8 C -0.040 4.040 9 C 0.276 3.724 10 O -0.466 6.466 11 N -0.331 5.331 12 C -0.024 4.024 13 C -0.158 4.158 14 C -0.164 4.164 15 C 0.062 3.938 16 H 0.070 0.930 17 N -0.331 5.331 18 C 0.035 3.965 19 C -0.397 4.397 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.586 5.586 23 Si 0.798 3.202 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.204 1.204 27 C -0.011 4.011 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.246 0.754 32 H 0.189 0.811 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.012 0.988 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.277 9.558 -24.186 26.037 hybrid contribution -1.134 -0.796 1.925 2.371 sum 0.143 8.763 -22.261 23.924 Atomic orbital electron populations 1.20914 0.83959 1.06973 1.03867 1.20012 0.97438 0.84031 0.99955 1.25432 0.90758 1.02719 1.17310 1.85030 1.11409 0.99230 1.80383 1.21974 0.84256 0.96459 0.82430 1.90915 1.49964 1.44161 1.55482 1.45754 1.05789 1.08027 1.64188 1.21984 1.03387 0.84904 0.93718 1.21492 0.77302 0.81202 0.92358 1.90744 1.52685 1.55644 1.47539 1.48312 1.57871 1.19061 1.07903 1.22245 0.96128 0.95388 0.88682 1.21883 0.95179 1.02413 0.96283 1.21950 1.01347 0.98420 0.94730 1.20868 0.91936 0.95544 0.85418 0.93043 1.44182 1.50577 1.25504 1.12880 1.20475 0.94739 0.86628 0.94640 1.19546 1.07742 1.24574 0.87826 0.91080 1.25828 0.99291 1.01202 0.98535 1.70252 1.28277 1.47869 1.12232 0.85300 0.79167 0.78172 0.77565 1.19861 1.22192 1.20354 1.22094 0.98843 0.97980 0.82225 0.86420 0.87187 0.91956 0.75433 0.81053 0.84578 0.85848 0.90055 0.90749 0.87066 0.92239 0.92285 0.98766 0.96282 0.94666 0.94330 0.92911 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.01 71.24 0.64 -0.32 16 2 C 0.09 1.63 6.59 40.71 0.27 1.90 16 3 C -0.23 -3.50 11.17 66.67 0.75 -2.76 16 4 S 0.00 -0.08 22.97 -56.49 -1.30 -1.38 16 5 C 0.47 13.68 8.27 129.87 1.07 14.75 16 6 O -0.52 -19.03 17.55 -4.74 -0.08 -19.12 16 7 N -0.52 -11.91 2.09 -647.51 -1.35 -13.27 16 8 C 0.09 1.66 4.09 85.63 0.35 2.01 16 9 C 0.49 14.72 7.77 87.65 0.68 15.40 16 10 O -0.59 -24.72 15.84 -3.04 -0.05 -24.77 16 11 N -0.60 -16.86 2.97 -818.15 -2.43 -19.29 16 12 C 0.10 1.56 6.34 86.36 0.55 2.11 16 13 C -0.12 -1.98 6.08 30.67 0.19 -1.79 16 14 C -0.13 -3.53 5.13 30.62 0.16 -3.38 16 15 C 0.17 6.65 2.75 45.20 0.12 6.77 16 16 H 0.05 2.11 7.86 -2.39 -0.02 2.09 16 17 N -0.61 -30.43 2.82 -701.60 -1.98 -32.40 16 18 C 0.18 8.96 7.91 127.77 1.01 9.97 16 19 C -0.27 -14.81 9.60 84.03 0.81 -14.00 16 20 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 21 C -0.05 -3.06 5.11 84.86 0.43 -2.62 16 22 N -0.94 -57.13 10.63 21.65 0.23 -56.90 16 23 Si 0.97 45.73 29.57 68.60 2.03 47.76 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 C 0.11 4.45 5.81 86.50 0.50 4.95 16 28 H 0.12 0.57 7.99 -2.39 -0.02 0.55 16 29 H 0.11 0.41 7.62 -2.39 -0.02 0.40 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.23 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.17 1.38 6.37 -2.39 -0.02 1.37 16 33 H 0.14 2.23 7.60 -2.38 -0.02 2.21 16 34 H 0.12 0.89 5.93 -2.39 -0.01 0.88 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.06 1.69 6.71 -2.39 -0.02 1.67 16 40 H -0.01 -0.34 7.41 -2.39 -0.02 -0.35 16 41 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 42 H 0.04 1.46 6.46 -2.39 -0.02 1.44 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.05 2.14 7.52 -2.39 -0.02 2.12 16 45 H 0.04 1.97 7.00 -2.39 -0.02 1.96 16 Total: -1.00 -86.05 371.97 3.60 -82.45 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.00 Total: 3.93 kcal Atomic # 6 Polarization: 25.45 SS G_CDS: 7.53 Total: 32.98 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.53 Total: -121.87 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.13 Total: -43.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.30 Total: -1.38 kcal Total: -86.05 3.60 -82.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027677913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.230 kcal (2) G-P(sol) polarization free energy of solvation -86.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds