Wall clock time and date at job start Sat Apr 11 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.32567 * 121.64655 * 2 1 4 4 S 1.77224 * 105.32123 * 180.02562 * 3 2 1 5 5 C 1.72205 * 94.85067 * 359.97438 * 4 3 2 6 6 O 1.21822 * 127.06113 * 179.97438 * 5 4 3 7 7 N 1.34251 * 105.88008 * 0.02562 * 5 4 3 8 8 C 1.46501 * 121.37854 * 180.27003 * 7 5 4 9 9 C 1.50700 * 109.47201 * 269.71871 * 8 7 5 10 10 O 1.21284 * 119.99769 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00279 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.62881 * 359.71909 * 11 9 8 13 13 C 1.53632 * 108.54575 * 126.36777 * 12 11 9 14 14 C 1.53040 * 109.23653 * 54.85531 * 13 12 11 15 15 C 1.53044 * 109.54179 * 298.50896 * 14 13 12 16 16 H 1.08999 * 109.49840 * 301.42102 * 15 14 13 17 17 N 1.46492 * 109.52629 * 181.33609 * 15 14 13 18 18 C 1.46504 * 120.00084 * 300.15056 * 17 15 14 19 19 C 1.36938 * 120.00289 * 120.14568 * 17 15 14 20 20 H 1.08000 * 120.00019 * 324.49639 * 19 17 15 21 21 C 1.38809 * 120.00005 * 144.48569 * 19 17 15 22 22 N 1.31619 * 119.99864 * 157.66310 * 21 19 17 23 23 Si 1.86807 * 120.00246 * 337.66147 * 21 19 17 24 24 H 1.48501 * 109.47034 * 95.56970 * 23 21 19 25 25 H 1.48494 * 109.47016 * 215.56937 * 23 21 19 26 26 H 1.48501 * 109.46732 * 335.57193 * 23 21 19 27 27 C 1.46932 * 120.63335 * 179.97438 * 11 9 8 28 28 H 1.09003 * 109.47521 * 269.97922 * 1 2 3 29 29 H 1.09004 * 109.47508 * 29.98014 * 1 2 3 30 30 H 1.09006 * 109.47137 * 149.97952 * 1 2 3 31 31 H 1.08007 * 127.33868 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46958 * 29.71290 * 8 7 5 33 33 H 1.08991 * 109.47185 * 149.71506 * 8 7 5 34 34 H 1.09006 * 109.58828 * 246.20125 * 12 11 9 35 35 H 1.08997 * 109.58776 * 6.62327 * 12 11 9 36 36 H 1.08992 * 109.63303 * 294.86879 * 13 12 11 37 37 H 1.08995 * 109.43503 * 174.72345 * 13 12 11 38 38 H 1.09005 * 109.45572 * 178.49443 * 14 13 12 39 39 H 1.08997 * 109.46472 * 58.53746 * 14 13 12 40 40 H 1.09003 * 109.47577 * 87.82527 * 18 17 15 41 41 H 1.09003 * 109.47179 * 207.82540 * 18 17 15 42 42 H 1.09002 * 109.47061 * 327.82671 * 18 17 15 43 43 H 0.97006 * 119.99910 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58167 * 353.37752 * 27 11 9 45 45 H 1.08992 * 109.58235 * 113.65568 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2024 1.1285 0.0000 4 16 3.9032 0.6304 -0.0008 5 6 3.5607 -1.0572 -0.0003 6 8 4.3673 -1.9701 -0.0009 7 7 2.2221 -1.1604 -0.0001 8 6 1.5576 -2.4660 0.0062 9 6 1.3240 -2.9176 -1.4125 10 8 1.6773 -2.2175 -2.3377 11 7 0.7224 -4.0994 -1.6531 12 6 0.2944 -4.9612 -0.5428 13 6 -1.1929 -5.2974 -0.7305 14 6 -1.4001 -5.9103 -2.1174 15 6 -0.9967 -4.8964 -3.1906 16 1 -1.5935 -3.9913 -3.0787 17 7 -1.2252 -5.4718 -4.5183 18 6 -0.5336 -6.7016 -4.9127 19 6 -2.0854 -4.8602 -5.3908 20 1 -2.9745 -4.3721 -5.0196 21 6 -1.8145 -4.8674 -6.7522 22 7 -2.7904 -4.6942 -7.6182 23 14 -0.0650 -5.1227 -7.3552 24 1 0.1427 -6.5571 -7.6786 25 1 0.1638 -4.3027 -8.5719 26 1 0.8891 -4.7113 -6.2942 27 6 0.4872 -4.5530 -3.0307 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.8151 2.1368 0.0004 32 1 2.1882 -3.1921 0.5194 33 1 0.6019 -2.3847 0.5237 34 1 0.8824 -5.8791 -0.5449 35 1 0.4354 -4.4367 0.4022 36 1 -1.7878 -4.3885 -0.6419 37 1 -1.5025 -6.0113 0.0327 38 1 -2.4500 -6.1748 -2.2443 39 1 -0.7860 -6.8055 -2.2144 40 1 -1.1211 -7.5650 -4.6006 41 1 -0.4106 -6.7180 -5.9956 42 1 0.4457 -6.7368 -4.4352 43 1 -2.6012 -4.6996 -8.5696 44 1 0.7557 -3.7590 -3.7276 45 1 1.0926 -5.4366 -3.2327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027677914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:24 Heat of formation + Delta-G solvation = 3.383430 kcal Electronic energy + Delta-G solvation = -28382.718039 eV Core-core repulsion = 24528.707841 eV Total energy + Delta-G solvation = -3854.010198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.46606 -39.79643 -37.81595 -37.48442 -35.39003 -32.91628 -32.41834 -31.62568 -30.67757 -29.39426 -27.13140 -26.22533 -25.15036 -24.09668 -23.52529 -21.81064 -21.07432 -19.72785 -18.91463 -18.25007 -17.77901 -17.19825 -16.90470 -16.08331 -15.71715 -15.56369 -15.27547 -14.98917 -14.42460 -14.35540 -14.20761 -13.94482 -13.90036 -13.78727 -13.41250 -13.12636 -12.81992 -12.72466 -12.42604 -12.36339 -12.29317 -12.20742 -11.78103 -11.49684 -11.35623 -11.16834 -10.74841 -10.62771 -10.48543 -10.30884 -10.24796 -10.13112 -9.99767 -9.63532 -9.51176 -8.60858 -8.54516 -8.12725 -6.92962 -6.04695 -3.45703 0.77027 1.21479 1.58811 1.93466 2.45143 2.49630 3.00244 3.28818 3.47203 3.51759 4.19774 4.23675 4.41916 4.48210 4.63395 4.72606 4.79447 4.91064 5.03573 5.09795 5.10661 5.15192 5.24628 5.29639 5.37370 5.44924 5.53953 5.63958 5.72551 5.85430 5.92162 6.00805 6.13182 6.23435 6.28724 6.40693 6.47291 6.49985 6.64795 6.75985 6.78310 7.10751 7.37098 7.96691 8.08392 8.29976 8.90101 9.64508 10.02110 11.10638 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.003289 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.236931 B = 8510.554272 C = 9105.848471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.113 3.887 3 C -0.239 4.239 4 S 0.003 5.997 5 C 0.487 3.513 6 O -0.474 6.474 7 N -0.517 5.517 8 C 0.082 3.918 9 C 0.495 3.505 10 O -0.524 6.524 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.130 4.130 14 C -0.132 4.132 15 C 0.168 3.832 16 H 0.074 0.926 17 N -0.601 5.601 18 C 0.109 3.891 19 C -0.272 4.272 20 H 0.081 0.919 21 C 0.037 3.963 22 N -0.898 5.898 23 Si 0.882 3.118 24 H -0.287 1.287 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.093 3.907 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.193 0.807 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.046 0.954 42 H 0.029 0.971 43 H 0.264 0.736 44 H 0.092 0.908 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 6.417 22.301 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.377 4.377 4 S 0.246 5.754 5 C 0.169 3.831 6 O -0.353 6.353 7 N -0.237 5.237 8 C -0.047 4.047 9 C 0.280 3.720 10 O -0.399 6.399 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.169 4.169 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.093 0.907 17 N -0.324 5.324 18 C -0.035 4.035 19 C -0.400 4.400 20 H 0.099 0.901 21 C -0.164 4.164 22 N -0.539 5.539 23 Si 0.713 3.287 24 H -0.215 1.215 25 H -0.229 1.229 26 H -0.194 1.194 27 C -0.031 4.031 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.210 0.790 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.536 6.886 21.580 23.873 hybrid contribution -0.207 -1.033 -0.614 1.220 sum 7.329 5.853 20.966 22.968 Atomic orbital electron populations 1.20792 0.86532 1.05174 1.03639 1.19395 0.95861 0.84689 0.99804 1.24837 0.93066 1.01253 1.18575 1.85053 1.08644 1.00716 1.80952 1.21557 0.83501 0.95879 0.82171 1.90958 1.48624 1.42529 1.53212 1.45639 1.06322 1.06669 1.65083 1.21777 1.00904 0.85100 0.96898 1.20631 0.78629 0.81806 0.90938 1.90773 1.50133 1.53777 1.45244 1.48227 1.58382 1.18577 1.08427 1.21921 0.96379 0.94943 0.88679 1.21981 0.94787 1.01527 0.98622 1.22053 1.02349 0.99332 0.93449 1.20754 0.92101 0.95346 0.85808 0.90734 1.44079 1.51538 1.23819 1.12927 1.21342 0.94391 0.88868 0.98942 1.18789 1.00523 1.33703 0.87018 0.90136 1.25426 0.96912 0.97943 0.96129 1.69856 1.30906 1.51308 1.01837 0.86893 0.87497 0.76433 0.77914 1.21475 1.22938 1.19436 1.22574 0.99456 1.00336 0.80716 0.89521 0.88770 0.90545 0.79021 0.85995 0.85992 0.90943 0.90494 0.91429 0.90882 0.91186 0.92347 0.96340 0.93610 0.95212 0.92594 0.88950 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 9.30 36.00 0.33 -0.35 16 2 C 0.11 1.10 6.59 -82.52 -0.54 0.56 16 3 C -0.24 -2.14 11.24 28.83 0.32 -1.82 16 4 S 0.00 0.04 22.96 -107.50 -2.47 -2.43 16 5 C 0.49 7.01 8.27 53.82 0.45 7.46 16 6 O -0.47 -8.22 17.55 5.08 0.09 -8.13 16 7 N -0.52 -6.23 2.09 -118.57 -0.25 -6.48 16 8 C 0.08 0.86 3.81 -5.19 -0.02 0.84 16 9 C 0.49 7.38 7.49 -10.99 -0.08 7.30 16 10 O -0.52 -10.39 15.84 5.55 0.09 -10.30 16 11 N -0.60 -8.43 2.97 -172.52 -0.51 -8.95 16 12 C 0.10 0.99 6.37 -3.48 -0.02 0.97 16 13 C -0.13 -1.30 6.10 -26.38 -0.16 -1.46 16 14 C -0.13 -1.90 5.14 -26.69 -0.14 -2.03 16 15 C 0.17 3.12 2.74 -67.83 -0.19 2.93 16 16 H 0.07 1.48 7.89 -51.93 -0.41 1.07 16 17 N -0.60 -13.79 2.41 -173.37 -0.42 -14.20 16 18 C 0.11 2.32 8.55 59.85 0.51 2.83 16 19 C -0.27 -7.48 9.85 -15.06 -0.15 -7.62 16 20 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 21 C 0.04 1.06 5.31 -17.43 -0.09 0.97 16 22 N -0.90 -27.29 13.97 55.49 0.78 -26.51 16 23 Si 0.88 22.63 24.94 -169.99 -4.24 18.40 16 24 H -0.29 -7.09 6.67 56.52 0.38 -6.71 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.09 1.66 5.78 -3.73 -0.02 1.64 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.08 0.62 6.70 -51.93 -0.35 0.27 16 31 H 0.19 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.12 1.14 7.59 -51.93 -0.39 0.75 16 33 H 0.12 0.79 6.40 -51.93 -0.33 0.45 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.82 7.71 -51.93 -0.40 0.42 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 1.07 3.10 -51.93 -0.16 0.91 16 42 H 0.03 0.56 6.35 -51.93 -0.33 0.23 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 45 H 0.06 1.10 6.49 -51.93 -0.34 0.77 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -36.18 366.73 -7.55 -43.73 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.35 Total: -2.85 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 0.20 Total: 12.19 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.40 Total: -56.14 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.24 Total: 18.40 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.18 -7.55 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027677914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.117 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds