Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42897 * 113.99688 * 2 1 4 4 C 1.50693 * 109.47407 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80566 * 90.02243 * 4 3 2 6 6 C 1.30939 * 117.36344 * 179.73969 * 5 4 3 7 7 C 1.50708 * 122.90071 * 179.97438 * 6 5 4 8 8 C 1.35655 * 114.19519 * 0.02562 * 6 5 4 9 9 C 1.46683 * 126.13353 * 180.02562 * 8 6 5 10 10 O 1.21685 * 119.99616 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00462 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00196 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.64269 * 323.30448 * 12 11 9 14 14 C 1.55155 * 110.72205 * 86.45510 * 12 11 9 15 15 C 1.54905 * 101.58264 * 153.86655 * 14 12 11 16 16 N 1.47431 * 104.83191 * 322.98624 * 15 14 12 17 17 C 1.36933 * 125.64927 * 204.16512 * 16 15 14 18 18 H 1.07996 * 119.99967 * 179.97438 * 17 16 15 19 19 C 1.38818 * 120.00267 * 359.97438 * 17 16 15 20 20 N 1.31620 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00168 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47274 * 89.99882 * 21 19 17 23 23 H 1.48501 * 109.46507 * 209.99954 * 21 19 17 24 24 H 1.48496 * 109.46882 * 329.99654 * 21 19 17 25 25 C 1.47018 * 108.70099 * 24.13121 * 16 15 14 26 26 H 1.08998 * 109.88146 * 239.52123 * 25 16 15 27 27 C 1.53002 * 109.88126 * 118.35807 * 25 16 15 28 28 S 1.70953 * 124.80453 * 269.72481 * 4 3 2 29 29 H 1.08995 * 109.46978 * 299.99361 * 1 2 3 30 30 H 1.08999 * 109.47135 * 60.00293 * 1 2 3 31 31 H 1.08998 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46981 * 59.99660 * 3 2 1 33 33 H 1.09002 * 109.47514 * 300.00580 * 3 2 1 34 34 H 1.09006 * 109.46615 * 89.97385 * 7 6 5 35 35 H 1.08991 * 109.46790 * 209.97126 * 7 6 5 36 36 H 1.08993 * 109.47246 * 329.97769 * 7 6 5 37 37 H 0.97004 * 119.99745 * 359.97438 * 11 9 8 38 38 H 1.08998 * 111.00263 * 271.93638 * 14 12 11 39 39 H 1.09001 * 111.00591 * 35.75353 * 14 12 11 40 40 H 1.08995 * 110.37093 * 81.82575 * 15 14 12 41 41 H 1.09006 * 110.36926 * 204.15411 * 15 14 12 42 42 H 0.97000 * 120.00085 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.47138 * 302.18868 * 27 25 16 44 44 H 1.08998 * 109.47031 * 62.19041 * 27 25 16 45 45 H 1.09003 * 109.47132 * 182.18919 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2494 1.1286 -1.0618 6 6 5.5441 1.0314 -0.8917 7 6 6.5172 0.9548 -2.0399 8 6 5.9337 1.0046 0.4075 9 6 7.3134 0.9022 0.8948 10 8 8.2346 0.8313 0.1029 11 7 7.5608 0.8865 2.2195 12 6 8.9389 0.7848 2.7061 13 1 9.5258 0.1285 2.0637 14 6 9.5927 2.1887 2.8008 15 6 10.6589 1.9617 3.9014 16 7 10.0188 1.0465 4.8639 17 6 10.3492 0.9211 6.1868 18 1 9.8177 0.2190 6.8119 19 6 11.3673 1.6966 6.7245 20 7 12.0154 2.5520 5.9626 21 14 11.8184 1.5250 8.5291 22 1 12.8679 0.4854 8.6803 23 1 12.3308 2.8231 9.0367 24 1 10.6152 1.1304 9.3047 25 6 8.9666 0.2914 4.1682 26 1 8.0023 0.4780 4.6408 27 6 9.2874 -1.2041 4.2066 28 16 4.4852 1.1167 1.4047 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 6.8287 1.9612 -2.3199 35 1 7.3896 0.3751 -1.7387 36 1 6.0370 0.4731 -2.8916 37 1 6.8265 0.9434 2.8507 38 1 10.0596 2.4667 1.8560 39 1 8.8647 2.9387 3.1101 40 1 11.5510 1.5017 3.4763 41 1 10.9114 2.9051 4.3854 42 1 12.7266 3.0941 6.3383 43 1 10.2614 -1.3787 3.7496 44 1 9.3052 -1.5454 5.2417 45 1 8.5239 -1.7538 3.6560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089008064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = -5.682829 kcal Electronic energy + Delta-G solvation = -26937.738285 eV Core-core repulsion = 23083.334944 eV Total energy + Delta-G solvation = -3854.403341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56977 -39.43967 -38.25538 -37.49942 -34.14958 -32.68998 -32.07726 -30.42301 -29.21424 -29.11196 -27.97103 -26.50094 -24.79900 -24.02312 -23.09425 -21.87976 -20.24813 -20.22111 -19.16285 -18.31774 -17.08876 -16.96766 -16.80798 -16.26320 -15.97235 -15.52842 -15.32892 -14.72392 -14.31123 -14.14812 -14.00103 -13.90986 -13.45500 -13.22244 -12.85314 -12.82676 -12.65537 -12.46823 -12.16287 -12.04885 -11.88752 -11.61373 -11.52149 -11.16883 -10.89165 -10.85244 -10.58675 -10.45827 -10.35586 -10.12486 -10.11240 -9.82706 -9.76054 -9.73647 -9.58158 -9.07205 -8.73374 -8.65652 -6.90632 -5.67944 -3.10993 -0.06083 0.88004 1.30644 2.16225 3.08644 3.14471 3.27903 3.38134 3.43267 3.45035 3.86280 4.40262 4.45748 4.71909 4.73956 4.80330 4.87162 4.91060 4.96032 5.21668 5.25657 5.39011 5.49319 5.55836 5.59232 5.62631 5.74175 5.77156 6.08030 6.14771 6.22979 6.28578 6.31452 6.49022 6.50433 6.55779 6.68417 6.82374 7.04795 7.33440 7.48274 7.57366 7.59902 7.82538 8.19455 8.32503 9.17898 9.78671 10.42276 11.35404 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.002479 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.113530 B =11294.080780 C =12186.431158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.048 3.952 5 N -0.458 5.458 6 C 0.143 3.857 7 C -0.089 4.089 8 C -0.286 4.286 9 C 0.595 3.405 10 O -0.521 6.521 11 N -0.708 5.708 12 C 0.136 3.864 13 H 0.096 0.904 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.595 5.595 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.155 3.845 26 H 0.036 0.964 27 C -0.156 4.156 28 S 0.191 5.809 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.395 0.605 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.110 0.890 42 H 0.253 0.747 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.429 -2.018 -12.343 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.227 4.227 5 N -0.175 5.175 6 C 0.005 3.995 7 C -0.148 4.148 8 C -0.411 4.411 9 C 0.380 3.620 10 O -0.399 6.399 11 N -0.358 5.358 12 C 0.032 3.968 13 H 0.114 0.886 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.047 3.953 26 H 0.053 0.947 27 C -0.215 4.215 28 S 0.448 5.552 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.229 0.771 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.128 0.872 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.012 -2.100 -12.099 24.337 hybrid contribution 0.155 0.053 0.570 0.593 sum -20.857 -2.047 -11.528 23.918 Atomic orbital electron populations 1.22824 0.79794 1.03458 1.00420 1.87973 1.20464 1.26087 1.95543 1.20829 0.84259 0.86254 1.02782 1.26781 1.00456 1.03675 0.91831 1.66019 1.04600 1.15502 1.31341 1.20666 0.89672 0.95343 0.93830 1.20675 0.96788 1.03962 0.93338 1.25711 0.98447 1.19572 0.97322 1.16602 0.85601 0.77014 0.82826 1.90785 1.44068 1.50227 1.54828 1.46006 1.10179 1.73838 1.05776 1.22239 0.80142 0.98808 0.95618 0.88636 1.23413 1.00132 0.95114 1.00584 1.21965 0.90566 0.97735 0.86967 1.44485 1.37940 1.43232 1.06329 1.19016 1.14115 1.18249 0.83507 0.90438 1.24795 0.98460 0.99029 0.98297 1.69791 1.25811 1.27476 1.33796 0.86075 0.78215 0.76968 0.84237 1.21627 1.21669 1.20721 1.20982 0.93508 0.91444 0.89354 0.94680 1.22247 1.00521 0.97327 1.01434 1.83884 0.96405 1.64273 1.10606 0.93546 0.93531 0.89014 0.90521 0.89737 0.90016 0.87925 0.90803 0.77081 0.91757 0.91985 0.96634 0.87243 0.93664 0.92798 0.92604 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.47 10.69 -35.23 -0.38 -3.85 16 3 C 0.14 1.09 6.51 36.00 0.23 1.32 16 4 C 0.05 0.52 7.02 -13.29 -0.09 0.43 16 5 N -0.46 -5.90 10.50 -7.70 -0.08 -5.98 16 6 C 0.14 1.91 6.79 -83.89 -0.57 1.34 16 7 C -0.09 -1.06 9.70 36.01 0.35 -0.71 16 8 C -0.29 -3.86 6.48 -37.10 -0.24 -4.11 16 9 C 0.60 9.29 7.78 -12.85 -0.10 9.19 16 10 O -0.52 -9.37 13.99 5.20 0.07 -9.30 16 11 N -0.71 -10.78 5.20 -53.33 -0.28 -11.06 16 12 C 0.14 2.46 2.76 -66.09 -0.18 2.27 16 13 H 0.10 1.82 7.41 -51.93 -0.38 1.44 16 14 C -0.15 -3.00 6.77 -24.59 -0.17 -3.17 16 15 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 16 N -0.59 -14.60 3.13 -162.57 -0.51 -15.11 16 17 C -0.22 -5.92 9.89 -15.06 -0.15 -6.07 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.16 3.08 3.48 -66.95 -0.23 2.85 16 26 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 27 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 28 S 0.19 2.00 22.31 -107.50 -2.40 -0.40 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.37 6.01 -51.93 -0.31 1.05 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.39 5.24 7.50 -40.82 -0.31 4.93 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -31.93 381.81 -8.83 -40.76 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.74 Total: 2.94 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 0.19 Total: 5.38 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.31 Total: -57.95 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.30 Total: -13.15 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.40 Total: -0.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.93 -8.83 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089008064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.078 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds