Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47226 * 2 1 4 4 N 1.29026 * 124.91615 * 89.99674 * 3 2 1 5 5 C 1.31775 * 117.12283 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.74831 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46724 * 305.02631 * 6 5 4 8 8 O 1.21275 * 120.00484 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99358 * 179.97438 * 7 6 5 10 10 C 1.46512 * 119.99782 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.44577 * 325.03631 * 10 9 7 12 12 C 1.53044 * 109.45708 * 85.00225 * 10 9 7 13 13 C 1.53187 * 109.31375 * 58.65657 * 12 10 9 14 14 N 1.46926 * 108.77629 * 54.63309 * 13 12 10 15 15 C 1.36940 * 120.62975 * 126.36813 * 14 13 12 16 16 H 1.07994 * 119.99945 * 332.44875 * 15 14 13 17 17 C 1.38814 * 119.99741 * 152.45397 * 15 14 13 18 18 N 1.31619 * 120.00115 * 342.76707 * 17 15 14 19 19 Si 1.86800 * 119.99880 * 162.77431 * 17 15 14 20 20 H 1.48496 * 109.47117 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.46804 * 299.99548 * 19 17 15 22 22 H 1.48500 * 109.47109 * 59.99370 * 19 17 15 23 23 C 1.46930 * 118.73855 * 306.64256 * 14 13 12 24 24 C 1.52766 * 109.00665 * 53.30825 * 23 14 13 25 25 H 1.09004 * 109.35765 * 65.49989 * 24 23 14 26 26 O 1.42900 * 109.58891 * 185.53442 * 24 23 14 27 27 C 1.33638 * 114.50310 * 0.23694 * 5 4 3 28 28 S 1.70980 * 124.91478 * 270.00130 * 3 2 1 29 29 H 1.09007 * 109.47206 * 59.99719 * 1 2 3 30 30 H 1.09002 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47310 * 299.99990 * 1 2 3 32 32 H 1.09010 * 109.47113 * 239.99946 * 2 1 3 33 33 H 1.08998 * 109.47337 * 120.00059 * 2 1 3 34 34 H 1.09002 * 109.46898 * 185.03230 * 6 5 4 35 35 H 1.08993 * 109.47137 * 65.02526 * 6 5 4 36 36 H 0.97002 * 120.00925 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.49377 * 298.70155 * 12 10 9 38 38 H 1.09002 * 109.51969 * 178.62480 * 12 10 9 39 39 H 1.09004 * 109.58464 * 294.84792 * 13 12 10 40 40 H 1.08993 * 109.70417 * 174.49249 * 13 12 10 41 41 H 0.96998 * 120.00327 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.58242 * 173.14315 * 23 14 13 43 43 H 1.08994 * 109.58811 * 293.56959 * 23 14 13 44 44 H 0.96706 * 114.00105 * 299.98481 * 26 24 23 45 45 H 1.08006 * 126.03614 * 179.75719 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1171 1.0580 5 6 2.7142 3.3478 0.8793 6 6 3.0402 4.2716 2.0246 7 6 1.8448 4.3835 2.9355 8 8 0.8282 3.7738 2.6796 9 7 1.9056 5.1614 4.0344 10 6 0.7438 5.2699 4.9203 11 1 -0.1698 5.2297 4.3272 12 6 0.7545 4.1105 5.9194 13 6 2.0554 4.1499 6.7272 14 7 2.1904 5.4775 7.3420 15 6 2.3926 5.6047 8.6904 16 1 2.0285 4.8441 9.3651 17 6 3.0654 6.7113 9.1899 18 7 3.7965 7.4549 8.3868 19 14 2.9335 7.1451 11.0021 20 1 3.7397 8.3608 11.2800 21 1 1.5123 7.4035 11.3469 22 1 3.4438 6.0155 11.8199 23 6 2.0981 6.6663 6.4834 24 6 0.8022 6.5985 5.6774 25 1 -0.0488 6.6689 6.3549 26 8 0.7605 7.6809 4.7453 27 6 2.8380 3.7116 -0.4006 28 16 2.3585 2.3435 -1.4020 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.2938 5.2576 1.6352 35 1 3.8867 3.8727 2.5834 36 1 2.7186 5.6495 4.2389 37 1 0.6892 3.1653 5.3804 38 1 -0.0961 4.2038 6.5946 39 1 2.9020 3.9657 6.0657 40 1 2.0276 3.3877 7.5059 41 1 4.2669 8.2280 8.7359 42 1 2.0959 7.5640 7.1015 43 1 2.9482 6.6915 5.8017 44 1 0.7940 8.5556 5.1565 45 1 3.1739 4.6739 -0.7581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090828341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -47.853505 kcal Electronic energy + Delta-G solvation = -27684.696511 eV Core-core repulsion = 23828.464513 eV Total energy + Delta-G solvation = -3856.231998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46951 -40.61161 -39.13225 -36.85832 -35.63003 -35.18791 -33.74234 -32.34619 -31.18376 -30.50000 -28.98429 -27.13718 -26.26960 -24.14632 -23.55058 -23.10289 -21.87841 -20.61653 -20.23861 -19.04070 -18.63730 -18.09829 -17.94367 -16.90761 -16.82886 -16.27332 -16.20125 -15.80537 -15.63911 -15.46431 -15.32087 -15.02607 -14.71057 -14.53491 -14.39448 -13.93609 -13.86018 -13.53447 -13.35409 -13.20701 -13.00314 -12.85682 -12.69445 -12.63071 -12.53698 -12.33708 -12.19819 -12.00801 -11.97388 -11.82934 -11.26410 -10.99441 -10.80596 -10.57385 -10.47260 -10.28079 -9.96121 -9.62012 -8.70788 -7.89927 -5.35116 -0.20589 0.48370 0.78094 1.48727 1.50369 1.56874 1.74581 1.78042 2.40068 2.50339 3.11885 3.13943 3.27024 3.66364 3.75375 3.90499 4.08608 4.11348 4.15812 4.23079 4.26914 4.32403 4.35303 4.36046 4.46931 4.49919 4.66650 4.70858 4.76660 4.91665 4.95607 4.95869 5.06017 5.08333 5.16355 5.18651 5.31923 5.32605 5.58823 5.59988 5.65553 6.34872 6.63162 6.82973 6.91616 7.12586 7.34367 7.80061 8.31943 9.15722 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002526 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.248898 B =11082.164278 C =11393.742119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.035 3.965 4 N -0.486 5.486 5 C 0.064 3.936 6 C -0.064 4.064 7 C 0.516 3.484 8 O -0.571 6.571 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.130 4.130 13 C 0.149 3.851 14 N -0.602 5.602 15 C -0.268 4.268 16 H 0.065 0.935 17 C -0.042 4.042 18 N -0.927 5.927 19 Si 0.964 3.036 20 H -0.293 1.293 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.159 3.841 24 C 0.085 3.915 25 H 0.058 0.942 26 O -0.572 6.572 27 C -0.259 4.259 28 S 0.149 5.851 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.252 0.748 42 H 0.065 0.935 43 H 0.015 0.985 44 H 0.391 0.609 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 -7.969 -19.749 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.244 4.244 4 N -0.200 5.200 5 C -0.068 4.068 6 C -0.106 4.106 7 C 0.303 3.697 8 O -0.450 6.450 9 N -0.357 5.357 10 C 0.066 3.934 11 H 0.086 0.914 12 C -0.171 4.171 13 C 0.024 3.976 14 N -0.327 5.327 15 C -0.398 4.398 16 H 0.083 0.917 17 C -0.238 4.238 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.219 1.219 21 H -0.205 1.205 22 H -0.205 1.205 23 C 0.032 3.968 24 C 0.024 3.976 25 H 0.076 0.924 26 O -0.379 6.379 27 C -0.398 4.398 28 S 0.405 5.595 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.137 0.863 36 H 0.242 0.758 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.033 0.967 44 H 0.240 0.760 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.025 -9.179 -20.889 23.016 hybrid contribution 0.663 1.764 2.554 3.174 sum -2.362 -7.415 -18.335 19.919 Atomic orbital electron populations 1.21727 0.93409 1.03383 1.01546 1.20354 0.96790 0.86456 1.05148 1.27549 1.02912 1.02832 0.91091 1.65982 1.14285 1.06724 1.33032 1.19769 1.01487 0.91404 0.94119 1.20301 0.96703 1.00660 0.92951 1.20788 0.89714 0.78022 0.81202 1.90663 1.33927 1.46188 1.74196 1.45933 1.17005 1.48227 1.24525 1.20604 0.89234 0.93299 0.90221 0.91394 1.22223 0.99813 0.97538 0.97478 1.20925 0.94271 0.87488 0.94917 1.44144 1.84019 1.00389 1.04122 1.19438 1.29646 1.07396 0.83295 0.91709 1.25695 0.96585 1.00202 1.01312 1.70128 1.31850 1.19263 1.36014 0.85403 0.77493 0.77122 0.80764 1.21906 1.20526 1.20512 1.21112 0.92387 0.91483 0.91794 1.22487 0.99082 0.86242 0.89780 0.92395 1.86393 1.97182 1.17701 1.36594 1.27132 1.11683 1.05744 0.95223 1.83532 1.59902 1.04601 1.11504 0.92087 0.89269 0.94759 0.86913 0.89421 0.84334 0.86282 0.75754 0.91608 0.90994 0.96327 0.92781 0.93887 0.91633 0.96747 0.75952 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.05 -0.81 6.52 29.85 0.19 -0.61 16 3 C 0.03 0.81 6.64 88.52 0.59 1.40 16 4 N -0.49 -14.65 9.68 -179.40 -1.74 -16.39 16 5 C 0.06 1.72 5.63 41.52 0.23 1.95 16 6 C -0.06 -1.59 6.20 29.10 0.18 -1.41 16 7 C 0.52 17.14 7.76 87.66 0.68 17.82 16 8 O -0.57 -23.22 15.11 -3.01 -0.05 -23.27 16 9 N -0.70 -23.46 4.15 -442.40 -1.84 -25.30 16 10 C 0.17 6.21 2.47 45.02 0.11 6.33 16 11 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 12 C -0.13 -4.79 5.77 30.67 0.18 -4.61 16 13 C 0.15 6.18 6.26 86.36 0.54 6.72 16 14 N -0.60 -28.58 3.00 -699.93 -2.10 -30.68 16 15 C -0.27 -14.10 9.58 84.03 0.81 -13.30 16 16 H 0.07 3.37 7.89 -2.91 -0.02 3.35 16 17 C -0.04 -2.21 4.91 84.86 0.42 -1.79 16 18 N -0.93 -51.21 11.19 21.65 0.24 -50.97 16 19 Si 0.96 43.01 29.59 68.60 2.03 45.04 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 23 C 0.16 6.95 4.61 86.22 0.40 7.34 16 24 C 0.09 3.12 3.34 30.53 0.10 3.22 16 25 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 26 O -0.57 -18.77 13.21 -148.98 -1.97 -20.73 16 27 C -0.26 -5.32 11.07 66.78 0.74 -4.58 16 28 S 0.15 2.71 23.18 -56.49 -1.31 1.40 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.14 2.48 8.03 -2.39 -0.02 2.46 16 35 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.41 13.12 6.88 -92.71 -0.64 12.48 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.02 0.78 7.74 -2.38 -0.02 0.76 16 40 H 0.05 2.22 7.93 -2.39 -0.02 2.21 16 41 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 42 H 0.07 3.23 6.04 -2.39 -0.01 3.22 16 43 H 0.01 0.66 6.64 -2.39 -0.02 0.65 16 44 H 0.39 10.11 9.08 -74.05 -0.67 9.44 16 45 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -70.31 378.55 -1.13 -71.44 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.29 Total: 32.72 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 5.88 Total: 16.76 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -5.43 Total: -123.35 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.01 Total: -44.00 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.31 Total: 1.40 kcal Total: -70.31 -1.13 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090828341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.587 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds